HHsearch alignment for GI: 254781187 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].

Probab=93.37  E-value=0.18  Score=28.06  Aligned_cols=51  Identities=25%  Similarity=0.274  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf             89999999888875124555554112477614886788999999999999708997799971537
Q gi|254781187|r   53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE  117 (367)
Q Consensus        53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~  117 (367)
T Consensus       160 ~~~a~~L~~av~~-----------r~NILisGGTGSGKTTlLNal~~~---i~~~eRvItiEDta  210 (355)
T COG4962         160 RRAAKFLRRAVGI-----------RCNILISGGTGSGKTTLLNALSGF---IDSDERVITIEDTA  210 (355)
T ss_pred             HHHHHHHHHHHHH-----------CEEEEEECCCCCCHHHHHHHHHHC---CCCCCEEEEEEEHH
T ss_conf             8999999999862-----------015999678788799999999715---79765089981236