HHsearch alignment for GI: 254781187 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=98.08 E-value=0.00022 Score=45.87 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
T Consensus 21 I~~l~p~Q~e~l~~---g~~~g~--------NllvsaPT~sGKTlvAElail~~~l~-~~~k~iyi~P~kALa~EK~-~~ 87 (717)
T PRK00254 21 IEELYPPQAEALTS---GVLEGK--------NLLIAIPTASGKTLIAEIAMVNKLLR-EGGKAVYLVPLKALAEEKF-RE 87 (717)
T ss_pred CCCCCHHHHHHHHH---HHCCCC--------CEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHH-HH
T ss_conf 87268999999874---233698--------18998998874899999999999985-2992999926799999999-99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC------CCCCCEEEEECCC
Q ss_conf 9999986231211233332100012333221111345776126621013544556521011------3586289997545
Q gi|254781187|r 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH------NTHGMAVFNDEAS 201 (367)
Q Consensus 128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h------~~~~~l~ivDEAs 201 (367)
T Consensus 88 f~~~~~~g~-~-----------V~~~tGd~~~~~~~l~-~~dIiV~T------~Ek~dsl~r~~~~~l~~i~lvViDEiH 148 (717)
T PRK00254 88 FKDWEVLGL-R-----------VAMATGDYDSKDEWLG-KYDIIIAT------AEKFDSLLRHGSSWIKDVKLLVADEIH 148 (717)
T ss_pred HHHHHHCCC-E-----------EEEEECCCCCCCCCCC-CCCEEEEC------HHHHHHHHHCCHHHHHCCCEEEEECEE
T ss_conf 987774498-8-----------9897489888701046-89999988------899999997162565326989997607
Q ss_pred CCCH----HHHHHHHHHHHCCCCCEE
Q ss_conf 5998----899998987406988258
Q gi|254781187|r 202 GTPD----IINKSILGFFTELNPNRF 223 (367)
Q Consensus 202 gI~d----~i~e~i~g~Lt~~~~~~~ 223 (367)
T Consensus 149 ~igD~~RG~~lE~~l~~l~~-~~qiI 173 (717)
T PRK00254 149 LIGSRDRGATLEFILTHMLG-RAQII 173 (717)
T ss_pred ECCCCCCHHHHHHHHHHHHC-CCEEE
T ss_conf 88898740999999995100-36699