HHsearch alignment for GI: 254781187 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=97.70 E-value=0.00052 Score=43.58 Aligned_cols=77 Identities=13% Similarity=0.013 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEEEEC
Q ss_conf 8443666842899999998888751245555541124776148867889999999999997089--------97799971
Q gi|254781187|r 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------GMSIICIA 114 (367)
Q Consensus 43 ~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~--------~~~v~~~A 114 (367)
T Consensus 99 L~~~Gf~~PTpIQ~~aIP~iL~G----k--------Dvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~ 166 (472)
T PRK01297 99 IHDLGFPYCTPIQAQVLGYTLAG----H--------DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIA 166 (472)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEC
T ss_conf 99779999999999999999769----9--------88998999867999999999999971775101136895299987
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 537999999999999999
Q gi|254781187|r 115 NSETQLKNTLWAEVSKWL 132 (367)
Q Consensus 115 ~t~~Q~~~~lw~ei~k~~ 132 (367)
T Consensus 167 PTRELa~QI~-~~~~~L~ 183 (472)
T PRK01297 167 PTRELVVQIA-KDAAALT 183 (472)
T ss_pred CCHHHHHHHH-HHHHHHH
T ss_conf 9999999999-9999974