HHsearch alignment for GI: 254781187 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=97.70  E-value=0.00052  Score=43.58  Aligned_cols=77  Identities=13%  Similarity=0.013  Sum_probs=56.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEEEEC
Q ss_conf             8443666842899999998888751245555541124776148867889999999999997089--------97799971
Q gi|254781187|r   43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------GMSIICIA  114 (367)
Q Consensus        43 ~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~--------~~~v~~~A  114 (367)
T Consensus        99 L~~~Gf~~PTpIQ~~aIP~iL~G----k--------Dvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~  166 (472)
T PRK01297         99 IHDLGFPYCTPIQAQVLGYTLAG----H--------DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIA  166 (472)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEC
T ss_conf             99779999999999999999769----9--------88998999867999999999999971775101136895299987


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             537999999999999999
Q gi|254781187|r  115 NSETQLKNTLWAEVSKWL  132 (367)
Q Consensus       115 ~t~~Q~~~~lw~ei~k~~  132 (367)
T Consensus       167 PTRELa~QI~-~~~~~L~  183 (472)
T PRK01297        167 PTRELVVQIA-KDAAALT  183 (472)
T ss_pred             CCHHHHHHHH-HHHHHHH
T ss_conf             9999999999-9999974