HHsearch alignment for GI: 254781187 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=95.37 E-value=0.17 Score=28.19 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 20 gq~~~~~~l~~~~~~~~~~-~a----~lf~g~rg~gkt~~ar~~a~~lnc~~-~~~~---~pc~-~-c~~-c~~i~~--- 84 (663)
T PRK08770 20 GQEHVVRALSNALDSGRVH-HA----FLFTGTRGVGKTTIARIFAKSLNCET-GTSA---DPCG-Q-CPA-CLDIDA--- 84 (663)
T ss_pred CCHHHHHHHHHHHHCCCCC-EE----EEEECCCCCCHHHHHHHHHHHHCCCC-CCCC---CCCC-C-CHH-HHHHHC---
T ss_conf 8599999999999709974-04----76227998888899999999867899-9999---9787-7-877-898854---
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 85 ------------------~~~~d~~e~d--aas~~~v~~~r~~~~~--~~~~p~~~~~k-vy~idevhmls~~~fna~lk 141 (663)
T PRK08770 85 ------------------GRYIDLLEID--AASNTGVDDVREVIEN--AQYMPSRGKFK-VYLIDEVHMLSKAAFNALLK 141 (663)
T ss_pred ------------------CCCCCEEEEE--CCCCCCHHHHHHHHHH--CCCCCCCCCEE-EEEEECHHHCCHHHHHHHHH
T ss_conf ------------------8988658864--6765888999999984--43588777436-99970043328999999987
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 7406988258999
Q gi|254781187|r 214 FFTELNPNRFWIM 226 (367)
Q Consensus 214 ~Lt~~~~~~~~i~ 226 (367)
T Consensus 142 tleepp~~v~f~~ 154 (663)
T PRK08770 142 TLEEPPEHVKFLL 154 (663)
T ss_pred HHCCCCCCEEEEE
T ss_conf 4027864428998