HHsearch alignment for GI: 254781187 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=95.65 E-value=0.16 Score=28.34 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977-99971537999999999999999
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKWL 132 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~-v~~~A~t~~Q~~~~lw~ei~k~~ 132 (367)
T Consensus 27 gq~~~~~~l~~~~~~~~~~-~a----~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~--c~~-c~~i~~-- 96 (600)
T PRK09111 27 GQEAMVRTLRNAFETGRIA-QA----FMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV--GEH-CQAIME-- 96 (600)
T ss_pred CCHHHHHHHHHHHHCCCCC-CE----EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHH-HHHHHC--
T ss_conf 8599999999999729842-04----7645789878999999999996698876668998898998--865-898866--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86231211233332100012333221111345776126621013544556521011358628999754559988999989
Q gi|254781187|r 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 (367)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~ 212 (367)
T Consensus 97 -------------------~~~~d~~--e~daas~~~v~~~r~~~~~~--~~~p~~~~~k-v~iidevhmls~~afnall 152 (600)
T PRK09111 97 -------------------GRHVDVI--EMDAASHTGVDDIREIIESV--RYRPVSARYK-VYIIDEVHMLSTAAFNALL 152 (600)
T ss_pred -------------------CCCCCEE--EEECCCCCCHHHHHHHHHHH--CCCCCCCCEE-EEEEECCCCCCHHHHHHHH
T ss_conf -------------------8998758--85155457888999999860--5388777546-9996001105799999999
Q ss_pred HHHHCCCCCEEEEE
Q ss_conf 87406988258999
Q gi|254781187|r 213 GFFTELNPNRFWIM 226 (367)
Q Consensus 213 g~Lt~~~~~~~~i~ 226 (367)
T Consensus 153 ktleepp~~~~fi~ 166 (600)
T PRK09111 153 KTLEEPPPHVKFIF 166 (600)
T ss_pred HHHHCCCCCEEEEE
T ss_conf 87625986549999