HHsearch alignment for GI: 254781187 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=97.98 E-value=0.00016 Score=46.67 Aligned_cols=138 Identities=16% Similarity=0.053 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-------CCEEEEECCCH
Q ss_conf 43666842899999998888751245555541124776148867889999999999997089-------97799971537
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-------GMSIICIANSE 117 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-------~~~v~~~A~t~ 117 (367)
T Consensus 18 ~~G~~~PTpIQ~~aIP~iL~Gr------------Dvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTR 85 (457)
T PRK10590 18 EQGYREPTPIQQQAIPAVLEGR------------DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (457)
T ss_pred HCCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHH
T ss_conf 7799999999999999997799------------8899889811899999999999986367654456882499976879
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99999999999999986231211233332100012333221111345776126621013544556521011358628999
Q gi|254781187|r 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 (367)
Q Consensus 118 ~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~iv 197 (367)
T Consensus 86 ELA~Qi-~~~~~~l~~~~~~~~------~~~~---Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVl 155 (457)
T PRK10590 86 ELAAQI-GENVRDYSKYLNIRS------LVVF---GGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (457)
T ss_pred HHHHHH-HHHHHHHCCCCCCEE------EEEE---CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 999999-999997425589459------9997---997775999986189998998928889888626776575239998
Q ss_pred ECCCCCC
Q ss_conf 7545599
Q gi|254781187|r 198 DEASGTP 204 (367)
Q Consensus 198 DEAsgI~ 204 (367)
T Consensus 156 DEAD~mL 162 (457)
T PRK10590 156 DEADRML 162 (457)
T ss_pred ECCHHHH
T ss_conf 3705651