HHsearch alignment for GI: 254781187 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=93.68 E-value=0.5 Score=25.29 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCC--CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999999888875124-555554--1124776148867889999999999
Q gi|254781187|r 54 WQLEFMEAVDVHCHSN-VNNSNP--TIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~-~~~~~~--~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
T Consensus 462 GQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~ 511 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 54999999999999986388899997058999789987779999999999