HHsearch alignment for GI: 254781187 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=94.62  E-value=0.32  Score=26.46  Aligned_cols=112  Identities=12%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             24776148867889999999999997089977999715379999999999999998623121123333210001233322
Q gi|254781187|r   78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL  157 (367)
Q Consensus        78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (367)
T Consensus        38 ~s~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~gv~d-----ir~ii~~a~~--------------------   87 (417)
T PRK13342         38 SSMILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSGVKD-----LREVIEEAKQ--------------------   87 (417)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHH-----HHHHHHHHHH--------------------
T ss_conf             759988969998999999999986-----8988996141038899-----9999999886--------------------


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH
Q ss_conf             11113457761266210135445565210113586289997545599889999898740698825899980789998768
Q gi|254781187|r  158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF  237 (367)
Q Consensus       158 ~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~F  237 (367)
T Consensus        88 -------------------------~~~---~~~-tilfiDEIHRfnK~QQD~LLp~vE~g--~--iiLIgATTE--NP~  132 (417)
T PRK13342         88 -------------------------SRL---GRR-TILFIDEIHRFNKAQQDALLPHVEDG--T--ITLIGATTE--NPS  132 (417)
T ss_pred             -------------------------HHC---CCC-EEEEEECHHHCCHHHHHHHHHHHHCC--C--EEEEEECCC--CCH
T ss_conf             -------------------------314---896-59999782005889999998751126--5--699974157--922


Q ss_pred             HHHHHCCCCCEEEEEEC
Q ss_conf             87541122350467523
Q gi|254781187|r  238 YDIFNIPLEDWKRYQID  254 (367)
Q Consensus       238 ye~~~~~~~~w~~~~~~  254 (367)
T Consensus       133 f~in~aLlSRc~vf~l~  149 (417)
T PRK13342        133 FEVNPALLSRAQVFELK  149 (417)
T ss_pred             HHCCHHHHHHHHHEECC
T ss_conf             53489898565700205