HHsearch alignment for GI: 254781187 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=94.62 E-value=0.32 Score=26.46 Aligned_cols=112 Identities=12% Similarity=0.117 Sum_probs=64.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24776148867889999999999997089977999715379999999999999998623121123333210001233322
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (367)
T Consensus 38 ~s~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~gv~d-----ir~ii~~a~~-------------------- 87 (417)
T PRK13342 38 SSMILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSGVKD-----LREVIEEAKQ-------------------- 87 (417)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHH-----HHHHHHHHHH--------------------
T ss_conf 759988969998999999999986-----8988996141038899-----9999999886--------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH
Q ss_conf 11113457761266210135445565210113586289997545599889999898740698825899980789998768
Q gi|254781187|r 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 (367)
Q Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~F 237 (367)
T Consensus 88 -------------------------~~~---~~~-tilfiDEIHRfnK~QQD~LLp~vE~g--~--iiLIgATTE--NP~ 132 (417)
T PRK13342 88 -------------------------SRL---GRR-TILFIDEIHRFNKAQQDALLPHVEDG--T--ITLIGATTE--NPS 132 (417)
T ss_pred -------------------------HHC---CCC-EEEEEECHHHCCHHHHHHHHHHHHCC--C--EEEEEECCC--CCH
T ss_conf -------------------------314---896-59999782005889999998751126--5--699974157--922
Q ss_pred HHHHHCCCCCEEEEEEC
Q ss_conf 87541122350467523
Q gi|254781187|r 238 YDIFNIPLEDWKRYQID 254 (367)
Q Consensus 238 ye~~~~~~~~w~~~~~~ 254 (367)
T Consensus 133 f~in~aLlSRc~vf~l~ 149 (417)
T PRK13342 133 FEVNPALLSRAQVFELK 149 (417)
T ss_pred HHCCHHHHHHHHHEECC
T ss_conf 53489898565700205