HHsearch alignment for GI: 254781187 and conserved domain: PRK13709
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=97.55 E-value=0.0016 Score=40.53 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 33789999752320125988885543014668884436668428999999988887512455555411247761488678
Q gi|254781187|r 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89 (367)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~G 89 (367)
T Consensus 938 etEK~IL~~i~~GK~tv~P--L~~~v--------~~s~l~~LT~GQK~At~LIltT---------~DRF-vaIQGyAGVG 997 (1756)
T PRK13709 938 EAEKSILRHILEGKEAVTP--LMERV--------PGELMEKLTSGQRAATRMILET---------SDRF-TVVQGYAGVG 997 (1756)
T ss_pred HHHHHHHHHHHCCCCCCCC--CHHHC--------CHHHHCCCCHHHHHHHHHHHCC---------CCCE-EEEEECCCCC
T ss_conf 9999999999747665686--02327--------5566635785778777563247---------8725-9987035566
Q ss_pred HHHHHHHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999999999970899---77999715379999999999999998623121123333210001233322111134577
Q gi|254781187|r 90 KTTLNAWMMLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 (367)
Q Consensus 90 KS~~~a~~~lw~~~~~~~---~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (367)
T Consensus 998 KTTql~avi~-ai~tl~~~~rpqViGLAPTH~AV~EL~~~GV-------------~AQTlaSfL~-------------d~ 1050 (1756)
T PRK13709 998 KTTQFRAVMS-AVNMLPESERPRVVGLGPTHRAVGEMRSAGV-------------DAQTLASFLH-------------DT 1050 (1756)
T ss_pred HHHHHHHHHH-HHHHCCCCCCCCEEEECCHHHHHHHHHHCCC-------------CHHHHHHHHH-------------HH
T ss_conf 6778999999-9972551358726756751789999996496-------------0789999986-------------20
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 612662101354455652101135862899975455998899998987406988258999807
Q gi|254781187|r 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 (367)
Q Consensus 167 ~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igN 229 (367)
T Consensus 1051 ~-----~~~~~ge~~d-y------~nTLFllDESSMVgN~dma~~~~lV~asggRA--V~~GD 1099 (1756)
T PRK13709 1051 Q-----LQQRSGETPD-F------SNTLFLLDESSMVGNTDMARAYALIAAGGGRA--VASGD 1099 (1756)
T ss_pred H-----HHHHCCCCCC-C------CCEEEEEEHHHCCCHHHHHHHHHHHHHCCCCE--EEECC
T ss_conf 2-----3441489876-5------54289983043147088999999997059837--97277