HHsearch alignment for GI: 254781187 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=98.44  E-value=5.9e-06  Score=55.47  Aligned_cols=159  Identities=11%  Similarity=0.068  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r   48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE  127 (367)
Q Consensus        48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e  127 (367)
T Consensus        13 ~ie~R~YQ~el~~~Al~---~----------NtiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pLV~Qq~-~~   77 (764)
T PRK13766         13 TIEARLYQQLLAAKALK---G----------NTLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPLVEQHA-EF   77 (764)
T ss_pred             CCCCCHHHHHHHHHHHH---C----------CEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHH-HH
T ss_conf             77653879999999985---8----------9899959986689999999999997-48988999858888999999-99


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CHH
Q ss_conf             9999986231211233332100012333221111345776126621013544556521011358628999754559-988
Q gi|254781187|r  128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDI  206 (367)
Q Consensus       128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI-~d~  206 (367)
T Consensus        78 ~~~~l~i~~~~i~-~lt-G~~~~------~~r~~~w~~~~Viv~TPQvl~ndL~~g--~i~l~dv~lLVfDEaHha~Gnh  147 (764)
T PRK13766         78 FRKFLNIDPEKIV-VLT-GEISP------EKRAALWEKAKVIVATPQVIENDLLAG--RISLEDVSLLIFDEAHRAVGNY  147 (764)
T ss_pred             HHHHCCCCCCEEE-EEE-CCCCH------HHHHHHHCCCCEEEECCHHHHHHHHHC--CCCHHHCCEEEEECCCCCCCCC
T ss_conf             9997099955289-998-88782------768998607999999908999999829--8678882289997466666776


Q ss_pred             HH-HHHHHHHHCCCCCEEEEEEECCC
Q ss_conf             99-99898740698825899980789
Q gi|254781187|r  207 IN-KSILGFFTELNPNRFWIMTSNTR  231 (367)
Q Consensus       207 i~-e~i~g~Lt~~~~~~~~i~igNP~  231 (367)
T Consensus       148 ~Y~~I~~~y~~~~~~PrILGLTASPG  173 (764)
T PRK13766        148 AYVFIAERYHEDAKNPLVLGLTASPG  173 (764)
T ss_pred             CHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             28999999985377855885036887