HHsearch alignment for GI: 254781187 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=98.44 E-value=5.9e-06 Score=55.47 Aligned_cols=159 Identities=11% Similarity=0.068 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
T Consensus 13 ~ie~R~YQ~el~~~Al~---~----------NtiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pLV~Qq~-~~ 77 (764)
T PRK13766 13 TIEARLYQQLLAAKALK---G----------NTLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPLVEQHA-EF 77 (764)
T ss_pred CCCCCHHHHHHHHHHHH---C----------CEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHH-HH
T ss_conf 77653879999999985---8----------9899959986689999999999997-48988999858888999999-99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CHH
Q ss_conf 9999986231211233332100012333221111345776126621013544556521011358628999754559-988
Q gi|254781187|r 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDI 206 (367)
Q Consensus 128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI-~d~ 206 (367)
T Consensus 78 ~~~~l~i~~~~i~-~lt-G~~~~------~~r~~~w~~~~Viv~TPQvl~ndL~~g--~i~l~dv~lLVfDEaHha~Gnh 147 (764)
T PRK13766 78 FRKFLNIDPEKIV-VLT-GEISP------EKRAALWEKAKVIVATPQVIENDLLAG--RISLEDVSLLIFDEAHRAVGNY 147 (764)
T ss_pred HHHHCCCCCCEEE-EEE-CCCCH------HHHHHHHCCCCEEEECCHHHHHHHHHC--CCCHHHCCEEEEECCCCCCCCC
T ss_conf 9997099955289-998-88782------768998607999999908999999829--8678882289997466666776
Q ss_pred HH-HHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 99-99898740698825899980789
Q gi|254781187|r 207 IN-KSILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 207 i~-e~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
T Consensus 148 ~Y~~I~~~y~~~~~~PrILGLTASPG 173 (764)
T PRK13766 148 AYVFIAERYHEDAKNPLVLGLTASPG 173 (764)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 28999999985377855885036887