HHsearch alignment for GI: 254781187 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.94 E-value=0.013 Score=35.01 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=64.6
Q ss_pred EEECCCCCCHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7614886788999999-999999708997799971537999999999999999862312112333321000123332211
Q gi|254781187|r 81 AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 (367)
Q Consensus 81 ~v~sgrg~GKS~~~a~-~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (367)
T Consensus 401 ~VvG~AGaGKStmL~aAReawEa---~GyrV~GaALsGkAAegL-e~~s-G----------I~Sr----TlAs~e~~--- 458 (1102)
T PRK13826 401 AVIGRAGAGKTTMMKAAREAWEA---AGYRVVGGALAGKAAEGL-EKEA-G----------IASR----TLSSWELR--- 458 (1102)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHH-HHCC-C----------CCCH----HHHHHHHH---
T ss_conf 99842888788999999999997---797798015007899977-5346-9----------5303----38999987---
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC-----CCCC
Q ss_conf 11345776126621013544556521011358628999754559988999989874069882589998078-----9998
Q gi|254781187|r 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-----RRLN 234 (367)
Q Consensus 160 ~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP-----~r~~ 234 (367)
T Consensus 459 ----w~--------------~-gr-~~L--~~~dVlVIDEAGMVgsrqmarvl~~ae~aGAKvV--LVGD~~QLQpIeAG 514 (1102)
T PRK13826 459 ----WN--------------Q-GR-DQL--DNKTVFVLDEAGMVSSRQMALFVEAVTRAGAKLV--LVGDPEQLQPIEAG 514 (1102)
T ss_pred ----HC--------------C-CC-CCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEE--EECCHHHHCCCCCC
T ss_conf ----43--------------5-86-556--7873899845556557999999999997599899--96887882761046
Q ss_pred CHHHHH
Q ss_conf 768875
Q gi|254781187|r 235 GWFYDI 240 (367)
Q Consensus 235 g~Fye~ 240 (367)
T Consensus 515 aaFrai 520 (1102)
T PRK13826 515 AAFRAI 520 (1102)
T ss_pred HHHHHH
T ss_conf 889999