HHsearch alignment for GI: 254781187 and conserved domain: PRK13833

>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=95.71  E-value=0.036  Score=32.29  Aligned_cols=55  Identities=20%  Similarity=0.295  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf             289999999888875124555554112477614886788999999999999708997799971537
Q gi|254781187|r   52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE  117 (367)
Q Consensus        52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~  117 (367)
T Consensus       130 t~~~~~~L~~aV~~-----------r~nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~  184 (323)
T PRK13833        130 TEAQASTIRSAISS-----------RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA  184 (323)
T ss_pred             CHHHHHHHHHHHHC-----------CCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCC
T ss_conf             99999999999981-----------89689991777756899999998640289323399945750