HHsearch alignment for GI: 254781187 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=95.71 E-value=0.036 Score=32.29 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 289999999888875124555554112477614886788999999999999708997799971537
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
T Consensus 130 t~~~~~~L~~aV~~-----------r~nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~ 184 (323)
T PRK13833 130 TEAQASTIRSAISS-----------RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CHHHHHHHHHHHHC-----------CCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCC
T ss_conf 99999999999981-----------89689991777756899999998640289323399945750