HHsearch alignment for GI: 254781187 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=97.72 E-value=0.00074 Score=42.63 Aligned_cols=159 Identities=12% Similarity=-0.022 Sum_probs=84.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEECCCHH
Q ss_conf 43666842899999998888751245555541124776148867889999999999997089------977999715379
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSET 118 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~------~~~v~~~A~t~~ 118 (367)
T Consensus 199 ~~GF~~PTPIQ~qaIPiaLs---G---r------DvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRE 266 (602)
T PTZ00110 199 AAGFTEPTPIQVQGWPIALS---G---R------DMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRE 266 (602)
T ss_pred HCCCCCCCHHHHHHHHHHHC---C---C------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHH
T ss_conf 76999999899999879856---9---8------6799878978899999999999985163436789976999738399
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999999999999862312112333321000123332211113457761266210135445565210113586289997
Q gi|254781187|r 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 (367)
Q Consensus 119 Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivD 198 (367)
T Consensus 267 LA~QI-~~e~~~~~~~~~ir------~~~i~---GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLD 336 (602)
T PTZ00110 267 LAEQI-REQALQFGRSSKLK------NSVAY---GGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLD 336 (602)
T ss_pred HHHHH-HHHHHHHHCCCCCE------EEEEE---CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 99999-99999971547854------99997---9968799999871699999979238999996499874310289987
Q ss_pred CCCCCCH-----HHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5455998-----8999989874069882589998
Q gi|254781187|r 199 EASGTPD-----IINKSILGFFTELNPNRFWIMT 227 (367)
Q Consensus 199 EAsgI~d-----~i~e~i~g~Lt~~~~~~~~i~i 227 (367)
T Consensus 337 EADRMLDmGFe~qI~~Il-~~i-~pdRQTlLFSA 368 (602)
T PTZ00110 337 EADRMLDMGFEPQIRKIV-SQI-RPDRQTLMWSA 368 (602)
T ss_pred CHHHHHCCCCHHHHHHHH-HHC-CCCCEEEEEEC
T ss_conf 577663546299999999-858-97877999955