HHsearch alignment for GI: 254781187 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.48 E-value=0.18 Score=27.99 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR 105 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~ 105 (367)
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyIN~~~ 155 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYINKNK 155 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 389876889867899999997874038