HHsearch alignment for GI: 254781187 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=98.41 E-value=4.2e-06 Score=56.37 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-EECCCCCCHHHHHHHHHHHHHHHC-----------CCCEEEEECCCHHH
Q ss_conf 289999999888875124555554112477-614886788999999999999708-----------99779997153799
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR-----------PGMSIICIANSETQ 119 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~-v~sgrg~GKS~~~a~~~lw~~~~~-----------~~~~v~~~A~t~~Q 119 (367)
T Consensus 352 ~~~Qk~AL~~~~~~-------------Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrA 418 (769)
T TIGR01448 352 SEEQKEALKTAIQD-------------KVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRA 418 (769)
T ss_pred HHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 68899999998609-------------48998577888616899999999987168775531245677648873774378
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCC--CCCCEEE
Q ss_conf 9999999999999862312112333321000123332211113457761266210135445565210-113--5862899
Q gi|254781187|r 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG-PHN--THGMAVF 196 (367)
Q Consensus 120 ~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g-~h~--~~~~l~i 196 (367)
T Consensus 419 AkRl--~E~TG~~a~TIHRL----------------------lG~~~~--------------~~~~~k~~~~~~~~DL~I 460 (769)
T TIGR01448 419 AKRL--AEVTGLEALTIHRL----------------------LGYGSD--------------TKSENKNLEDPIDADLLI 460 (769)
T ss_pred HHHC--CCCCCCHHHHHHHH----------------------HCCCCC--------------CCCCCHHHCCCCCCCEEE
T ss_conf 8851--10026212347786----------------------368988--------------873211011347877699
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC-----CCCCCCHHHHHHHC
Q ss_conf 975455998899998987406988258999807-----89998768875411
Q gi|254781187|r 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSN-----TRRLNGWFYDIFNI 243 (367)
Q Consensus 197 vDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igN-----P~r~~g~Fye~~~~ 243 (367)
T Consensus 461 vDE~SM~Dt~L~~~lL~a~P~-~a~ll--lVGD~DQLPSV~pG~VL~DLi~s 509 (769)
T TIGR01448 461 VDESSMVDTWLASSLLAAVPD-HARLL--LVGDADQLPSVGPGQVLKDLIQS 509 (769)
T ss_pred EECCCHHHHHHHHHHHHHCCC-CCEEE--EECCCCCCCCCCCCHHHHHHHHC
T ss_conf 814621889999999861797-77798--88376888988644089999846