HHsearch alignment for GI: 254781187 and conserved domain: TIGR02768
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=94.74 E-value=0.28 Score=26.79 Aligned_cols=122 Identities=18% Similarity=0.019 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8999999988887512455555411247761488-678899999999999970899779997153799999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
T Consensus 417 ~EQ~~Av~hvt~s~------------~iavVvG~AGtGKSt~L~aAR~AWe~~G--y~V~GAALsGKAAe-gLe~~---- 477 (888)
T TIGR02768 417 EEQKEAVRHVTGSG------------DIAVVVGRAGTGKSTMLKAAREAWEAAG--YRVIGAALSGKAAE-GLEAE---- 477 (888)
T ss_pred HHHHHHHHHHCCCC------------CEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEHHHHHHHHH-HHHCC----
T ss_conf 89999987532899------------6489974899876678999999998739--77871545558988-73002----
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 98623121123333210001233322111134577612662101354455652101135862899975455998899998
Q gi|254781187|r 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 (367)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i 211 (367)
T Consensus 478 -----------sGI~SRTLASle~a-------------W----------~~G~d~L~~~--dvLviDEAGMV~S~Qm~r~ 521 (888)
T TIGR02768 478 -----------SGIESRTLASLEYA-------------W----------ANGRDLLEDK--DVLVIDEAGMVGSRQMARV 521 (888)
T ss_pred -----------CCCCHHHHHHHHHH-------------H----------HCCCCCCCCC--CEEEEECCCCHHHHHHHHH
T ss_conf -----------68750478879999-------------8----------7387522477--6689851544146778899
Q ss_pred HHHHHCCCCCEEEEEEECCC
Q ss_conf 98740698825899980789
Q gi|254781187|r 212 LGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 212 ~g~Lt~~~~~~~~i~igNP~ 231 (367)
T Consensus 522 l~~A~~AGaKv--VLvGD~~ 539 (888)
T TIGR02768 522 LKEAEEAGAKV--VLVGDPE 539 (888)
T ss_pred HHHHHHCCCCE--EEECCHH
T ss_conf 99998727605--9848857