HHsearch alignment for GI: 254781187 and conserved domain: TIGR02768

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=94.74  E-value=0.28  Score=26.79  Aligned_cols=122  Identities=18%  Similarity=0.019  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             8999999988887512455555411247761488-678899999999999970899779997153799999999999999
Q gi|254781187|r   53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW  131 (367)
Q Consensus        53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~  131 (367)
T Consensus       417 ~EQ~~Av~hvt~s~------------~iavVvG~AGtGKSt~L~aAR~AWe~~G--y~V~GAALsGKAAe-gLe~~----  477 (888)
T TIGR02768       417 EEQKEAVRHVTGSG------------DIAVVVGRAGTGKSTMLKAAREAWEAAG--YRVIGAALSGKAAE-GLEAE----  477 (888)
T ss_pred             HHHHHHHHHHCCCC------------CEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEHHHHHHHHH-HHHCC----
T ss_conf             89999987532899------------6489974899876678999999998739--77871545558988-73002----


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             98623121123333210001233322111134577612662101354455652101135862899975455998899998
Q gi|254781187|r  132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI  211 (367)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i  211 (367)
T Consensus       478 -----------sGI~SRTLASle~a-------------W----------~~G~d~L~~~--dvLviDEAGMV~S~Qm~r~  521 (888)
T TIGR02768       478 -----------SGIESRTLASLEYA-------------W----------ANGRDLLEDK--DVLVIDEAGMVGSRQMARV  521 (888)
T ss_pred             -----------CCCCHHHHHHHHHH-------------H----------HCCCCCCCCC--CEEEEECCCCHHHHHHHHH
T ss_conf             -----------68750478879999-------------8----------7387522477--6689851544146778899


Q ss_pred             HHHHHCCCCCEEEEEEECCC
Q ss_conf             98740698825899980789
Q gi|254781187|r  212 LGFFTELNPNRFWIMTSNTR  231 (367)
Q Consensus       212 ~g~Lt~~~~~~~~i~igNP~  231 (367)
T Consensus       522 l~~A~~AGaKv--VLvGD~~  539 (888)
T TIGR02768       522 LKEAEEAGAKV--VLVGDPE  539 (888)
T ss_pred             HHHHHHCCCCE--EEECCHH
T ss_conf             99998727605--9848857