HHsearch alignment for GI: 254781187 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.16 E-value=0.23 Score=27.34 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 776148867889999999999997089977999715379999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
T Consensus 19 ~lVEAGTGTGKSLAYLvPAl~~a~~~~g~rVVISTaT~aLQeQL~ 63 (636)
T TIGR03117 19 GMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 999899971088999999999998579998899798799999997