HHsearch alignment for GI: 254781187 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.

Probab=92.71  E-value=0.7  Score=24.38  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999988887512455555411247761488678899999999999970899779997153799999999999999986
Q gi|254781187|r   55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM  134 (367)
Q Consensus        55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~  134 (367)
T Consensus         2 q~~~~~~~~~~~-------~~---~ivitAPTgsGKT~Aa~lp~l-----~~~~~~lyi~P~kAL~~Dq~-~~l~~~~~~   65 (357)
T TIGR03158         2 QVATFEALQSKD-------AD---IIFNTAPTGAGKTLAWLTPLL-----HGENDTIALYPTNALIEDQT-EAIKEFVDV   65 (357)
T ss_pred             HHHHHHHHHCCC-------CC---EEEEECCCCCCHHHHHHHHHH-----HCCCCEEEECCHHHHHHHHH-HHHHHHHHH
T ss_conf             689999997689-------98---699989998569999999997-----38987999777899999999-999999987


Q ss_pred             C
Q ss_conf             2
Q gi|254781187|r  135 L  135 (367)
Q Consensus       135 ~  135 (367)
T Consensus        66 ~   66 (357)
T TIGR03158        66 F   66 (357)
T ss_pred             H
T ss_conf             4