HHsearch alignment for GI: 254781187 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.76 E-value=0.00041 Score=44.21 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089---9779997153799999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKN 122 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~---~~~v~~~A~t~~Q~~~ 122 (367)
T Consensus 17 ~g~~~pt~IQ~~~ip~il~g----~--------dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Q 84 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSG----R--------DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 79999999999999999779----9--------88997579972228888699999861667689669999687999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781187|r 123 TLWAEVSKWL 132 (367)
Q Consensus 123 ~lw~ei~k~~ 132 (367)
T Consensus 85 i-~~~~~~l~ 93 (203)
T cd00268 85 I-AEVARKLG 93 (203)
T ss_pred H-HHHHHHHC
T ss_conf 9-99999850