HHsearch alignment for GI: 254781187 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.91 E-value=0.43 Score=25.70 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
T Consensus 18 R~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~ 52 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVL 52 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77887899988999999999999985898499999