HHsearch alignment for GI: 254781187 and conserved domain: cd01128

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.91  E-value=0.43  Score=25.70  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=26.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             47761488678899999999999970899779997
Q gi|254781187|r   79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI  113 (367)
Q Consensus        79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~  113 (367)
T Consensus        18 R~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~   52 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVL   52 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             77887899988999999999999985898499999