HHsearch alignment for GI: 254781187 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=97.26 E-value=0.0051 Score=37.46 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=68.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 761488678899999999999970899-7799971537999999999999999862312112333321000123332211
Q gi|254781187|r 81 AISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 (367)
Q Consensus 81 ~v~sgrg~GKS~~~a~~~lw~~~~~~~-~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (367)
T Consensus 20 iLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~s--l~~~W~~Ei~~~~~~~~~~~~~~~~~~r~-------~~~~ 90 (295)
T pfam00176 20 ILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLS--TLDNWLNEFEKWAPDLNIVVYYGDGDSRS-------ELLR 90 (295)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHH--HHHHHHHHHHHHCCCCCEEEEEECHHHHH-------HHHH
T ss_conf 97227875799999999999998388999889997578--88767889998679970799984707689-------9988
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH---HHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 113457761266210135445565210113586289997545599889---99989874069882589998078999
Q gi|254781187|r 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNPNRFWIMTSNTRRL 233 (367)
Q Consensus 160 ~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i---~e~i~g~Lt~~~~~~~~i~igNP~r~ 233 (367)
T Consensus 91 ~~~~~~~~~ivitsY~~~~~~~---~~l~~~~w~~vI~DEaH~iKN~~s~~~~a~~-~l---~~~~r~~LTGTPiqN 160 (295)
T pfam00176 91 NVLRTGKFDVLITSYEYIRRDK---DELHKANWRYVILDEGHRIKNAKSKLSLALK-SL---KTNNRLLLTGTPIQN 160 (295)
T ss_pred HHHHCCCCCEEEECHHHHHHHH---HHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HC---CCCCEEEEECCCCCC
T ss_conf 6774168859993099999759---9984087658998762012587889999999-52---358189986874558