HHsearch alignment for GI: 254781187 and conserved domain: pfam03237
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=99.97 E-value=2.6e-28 Score=192.55 Aligned_cols=247 Identities=16% Similarity=0.084 Sum_probs=183.6
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61488678899999999999970899779997153799999999999999986231211233332100012333221111
Q gi|254781187|r 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 (367)
Q Consensus 82 v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 67 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFKKGIIEIAGDLLEI--------------TFEEKNGNP 67 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCC--------------CEEECCCCE
T ss_conf 426452528399999999999858997289997999999999999999966886387--------------167278873
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH-HHH-HHHHHCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 34577612662101354455652101135862899975455998899-998-9874069882589998078999876887
Q gi|254781187|r 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSI-LGFFTELNPNRFWIMTSNTRRLNGWFYD 239 (367)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~-e~i-~g~Lt~~~~~~~~i~igNP~r~~g~Fye 239 (367)
T Consensus 68 i~~~nGs~i~~~~---~~~~~~~~~~rG~~~~~i~~DE~a~~~~~~~~~~~~~~~~~~~~~~--~~~~stp~~~~~~~~~ 142 (380)
T pfam03237 68 IILPNGAKLYFLG---LESETTAQGYRGASIAGIYFDEATWLPKFQESELVRRLRATKGKWR--KTFFSTPPSPGHWVYD 142 (380)
T ss_pred EEECCCCEEEEEE---CCCCCCHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCCCC--EEEEECCCCCCCCHHH
T ss_conf 9915998899962---5776643103485455499830453662789999864410479975--7999889899851989
Q ss_pred HHHCCC-------CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECHHHHHHHHCCCCCC
Q ss_conf 541122-------3504675233328888988999999621688000268886443277898078299986443157777
Q gi|254781187|r 240 IFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 (367)
Q Consensus 240 ~~~~~~-------~~w~~~~~~~~d~p~~~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~~~~~ 312 (367)
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~~e~l~~~~~~~--~~~qe~~g~f~-~~~g~if~~~~~~~~~~~~~~~ 219 (380)
T pfam03237 143 FWTGWLDDKGKRTFIPADVEVTIEDARALGPEYKEELRALYSDE--EFARLLMGEWV-DTSGSIFKRFELERCDVDEERP 219 (380)
T ss_pred HHHHHCCCCCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHCCHH--HHHHHHCCCEE-CCCCCEECHHHHHHCCCCCCCC
T ss_conf 98554016777520220674566871326889999998768999--99998588666-5788571478885464675568
Q ss_pred CCCCCEEEEEECCC-CCCCEEEEEEE---CCCEEEEEHHHCH
Q ss_conf 88984899996387-78810899997---0883687042030
Q gi|254781187|r 313 DLYAPLIMGCDIAG-EGGDKTVVVFR---RGNIIEHIFDWSA 350 (367)
Q Consensus 313 ~~~~p~viGvDvAr-~G~D~Tvi~~r---~G~~v~~i~~~~~ 350 (367)
T Consensus 220 p~~~~~~~g~D~~~~~~~D~t~~~v~~~~~~~~~~~~~~~~~ 261 (380)
T pfam03237 220 PEHREVIGGVDPAASRGGDYAALVVIAEVDGDKFYVLAREHE 261 (380)
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEEE
T ss_conf 888559999867888889966999999657985999999983