HHsearch alignment for GI: 254781187 and conserved domain: pfam05894
>pfam05894 Podovirus_Gp16 Podovirus DNA encapsidation protein (Gp16). This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction.
Probab=94.21 E-value=0.39 Score=25.91 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=74.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24776148867889999999999997089977999715379999999999999998623121123333210001233322
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (367)
T Consensus 19 lnfvI-G~RGiGKTya~k~~~ikd~i~k-GeqFiYLRr~k~El~k~~n~~F~di~~~fpn~e-f~------------Vkg 83 (333)
T pfam05894 19 LNFVI-GARGIGKTYALKERVIKDFIKK-GEQFIYLRRYKTELKKLANEFFNDVAHEFPNNE-FY------------VKG 83 (333)
T ss_pred EEEEE-ECCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCE-EE------------EEC
T ss_conf 79998-2465540246778889999862-967999991206888777775551665378980-79------------975
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC-------CCCCHHHHH---HHHHHHHCCCCCEEEEEE
Q ss_conf 1111345776126621013544556521011358628999754-------559988999---989874069882589998
Q gi|254781187|r 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-------SGTPDIINK---SILGFFTELNPNRFWIMT 227 (367)
Q Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEA-------sgI~d~i~e---~i~g~Lt~~~~~~~~i~i 227 (367)
T Consensus 84 nki~~~~k~igy~i~LS~~-----q~lKS~~Yp~V~~I~fDEfi~ek~~~~Y~pNev~~llnl~~tV~R~-Re~vr~~~l 157 (333)
T pfam05894 84 NKFYIKGELIGYAIPLSNW-----QALKSLAYPNVSTIFFDEFVREKDYGSYDPNEVRNFLNLMDTVFRA-RERVRCICL 157 (333)
T ss_pred CEEEECCEEEEEEEEHHHH-----HHHHCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 4899878289999863245-----5631347985589983511244544578943899999999998750-377389996
Q ss_pred ECCCCCCCHHHHHHHC
Q ss_conf 0789998768875411
Q gi|254781187|r 228 SNTRRLNGWFYDIFNI 243 (367)
Q Consensus 228 gNP~r~~g~Fye~~~~ 243 (367)
T Consensus 158 sNAv~i~NPYF~~f~~ 173 (333)
T pfam05894 158 SNAVSIVNPYFLLFHI 173 (333)
T ss_pred CCHHHCCCHHHEEEEC
T ss_conf 4704204725515511