HHsearch alignment for GI: 254781187 and conserved domain: smart00488
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.03 E-value=4.9e-05 Score=49.84 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=57.9
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHH-HHHHHHHHHHHC---CCC
Q ss_conf 5430146688844366684289999999888875124555554112477614886788999-999999999708---997
Q gi|254781187|r 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL-NAWMMLWLISTR---PGM 108 (367)
Q Consensus 33 ~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~-~a~~~lw~~~~~---~~~ 108 (367)
T Consensus 2 ~~~FPy-----------~py~~Q~e~m~~v~~~l~~~~--------~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ 62 (289)
T smart00488 2 LFYFPY-----------EPYPIQYEFMEELKRVLDRGK--------IGILESPTGTGKTLSLLCLTLTWLRSFPERIQKI 62 (289)
T ss_pred EECCCC-----------CCCHHHHHHHHHHHHHHHCCC--------EEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCC
T ss_conf 327899-----------999899999999999997499--------7999899965189999999999999670102456
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 799971537999999999999999
Q gi|254781187|r 109 SIICIANSETQLKNTLWAEVSKWL 132 (367)
Q Consensus 109 ~v~~~A~t~~Q~~~~lw~ei~k~~ 132 (367)
T Consensus 63 ki~~~t~t~~~~~~~~-~elr~~~ 85 (289)
T smart00488 63 KLIYLSRTVSEIEKRL-EELRKLM 85 (289)
T ss_pred EEEEEECCHHHHHHHH-HHHHHHC
T ss_conf 1687615378899999-9998632