HHsearch results for GI: 254781187 and protein with PDBid: 1gm5_A
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.17 E-value=0.007 Score=35.30 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.++.-|.+++.+|...+..+.- | ++.|.|.-|+|||.+....++..+.. +..+++++||..=+.+. ...++
T Consensus 368 ~lT~~Q~~~~~~i~~d~~~~~~-----~-~~Llqa~TGSGKTlv~llpil~~i~~--g~q~lilaPTreLA~Q~-~~~~k 438 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKP-----M-NRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQH-YRRTV 438 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSC-----C-CCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCC-----C-EEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHH-HHHHH
T ss_conf 7898899999999998618987-----5-28998178974609999999999863--89559992528999999-99998
Q ss_pred HHHHHCCC
Q ss_conf 99986231
Q gi|254781187|r 130 KWLSMLPH 137 (367)
Q Consensus 130 k~~~~~~~ 137 (367)
++...+..
T Consensus 439 ~l~~~~~i 446 (780)
T 1gm5_A 439 ESFSKFNI 446 (780)
T ss_dssp HHHTCSSC
T ss_pred HHHCCCCC
T ss_conf 76115783