HHsearch results for GI: 254781187 and protein with PDBid: 1hv8_A

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.01  E-value=2.8e-05  Score=49.98  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=52.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
Q ss_conf             36668428999999988887512455555411247761488678899999999999970899779997153799999999
Q gi|254781187|r   46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW  125 (367)
Q Consensus        46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw  125 (367)
                      .+|..|+++|.+++..+-..-+           .+.|.++-|+|||.+...-++-.+....+.+++++.|+..-+.+.. 
T Consensus        24 ~g~~~~t~~Q~~ai~~~l~g~~-----------~vlv~apTGsGKT~~~~lp~l~~~~~~~~~~~li~~p~~~l~~q~~-   91 (367)
T 1hv8_A           24 KGFEKPTDIQMKVIPLFLNDEY-----------NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVA-   91 (367)
T ss_dssp             HTCCSCCHHHHHHHHHHHHTCS-----------EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHH-
T ss_pred             CCCCCCCHHHHHHHHHHHCCCC-----------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH-
T ss_conf             7999999999999999975999-----------9999889997699999999999865428966999951067667778-


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254781187|r  126 AEVSKWLS  133 (367)
Q Consensus       126 ~ei~k~~~  133 (367)
                      ..+.++..
T Consensus        92 ~~~~~~~~   99 (367)
T 1hv8_A           92 DEIESLKG   99 (367)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHC
T ss_conf             89998731