HHsearch results for GI: 254781187 and protein with PDBid: 1oyw_A

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=96.99  E-value=0.00082  Score=41.02  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf             666842899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r   47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL  124 (367)
Q Consensus        47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l  124 (367)
                      +|+.+++.|++++..+-++    .        .+.|.++.|+|||.+...-++   .  .+..+++++|+..-+.+..
T Consensus        22 G~~~~rp~Q~~aI~~iL~G----~--------Dvlv~apTGsGKTL~y~LP~l---~--~~~~~lVIsPl~~L~~qq~   82 (523)
T 1oyw_A           22 GYQQFRPGQEEIIDTVLSG----R--------DCLVVMPTGGGKSLCYQIPAL---L--LNGLTVVVSPLISLMKDQV   82 (523)
T ss_dssp             CCSSCCTTHHHHHHHHHTT----C--------CEEEECSCHHHHHHHHHHHHH---H--SSSEEEEECSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHH---H--CCCCEEEECCHHHHHHHHH
T ss_conf             9899998999999999839----9--------889986998469999999999---8--0996899887699999999