HHsearch results for GI: 254781187 and protein with PDBid: 2db3_A
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.08 E-value=2.2e-05 Score=50.63 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CEEEEECCCHH
Q ss_conf 436668428999999988887512455555411247761488678899999999999970899------77999715379
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSET 118 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~------~~v~~~A~t~~ 118 (367)
-.+|..|++.|.+.+..+-++ . .+.+.|..|+|||.....-++-.+...+. ..+++++||..
T Consensus 73 ~~g~~~pt~iQ~~aip~il~g----~--------dvi~~a~TGsGKTlafllP~l~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 73 KSGYKIPTPIQKCSIPVISSG----R--------DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp HTTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred HCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCHH
T ss_conf 779999999999999999759----9--------8899889999789999999999864244101047974999928799
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254781187|r 119 QLKNTLWAEVSKWL 132 (367)
Q Consensus 119 Q~~~~lw~ei~k~~ 132 (367)
.+..+ ..++.+..
T Consensus 141 L~~q~-~~~~~~~~ 153 (434)
T 2db3_A 141 LAIQI-FNEARKFA 153 (434)
T ss_dssp HHHHH-HHHHHHHT
T ss_pred HHHHH-HHHHHHHH
T ss_conf 99988-87665542