HHsearch results for GI: 254781187 and protein with PDBid: 2eyq_A
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.67 E-value=0.029 Score=31.55 Aligned_cols=158 Identities=10% Similarity=0.017 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 42899999998888751245555541124776148867889999999999997089977999715379999999999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k 130 (367)
.++=|.+++.+|-...+.+.- | ...|++--|+|||.++...++ .+...+..+++++||..-+.+. +..+++
T Consensus 604 ~t~~q~~a~~~i~~~~~~~~~-----~-~~L~~g~tGsGKT~v~~~a~~--~a~~~g~qv~il~PT~~La~Q~-~~~~~~ 674 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLA-----M-DRLVCGDVGFGKTEVAMRAAF--LAVDNHKQVAVLVPTTLLAQQH-YDNFRD 674 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSC-----C-EEEEECCCCTTTHHHHHHHHH--HHHTTTCEEEEECSSHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCH-----H-HHEEECCCCCCHHHHHHHHHH--HHHHCCCEEEEEECCHHHHHHH-HHHHHH
T ss_conf 787799999999887606855-----6-664340789866999999999--9863586489994849999999-999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 9986231211233332100012333221111345776-126621013544556521011358628999754559988999
Q gi|254781187|r 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
.....+.+-.......... +....--....| .-++.+........ +.-.+.-|+|+||+.-......+
T Consensus 675 ~~~~~~~~v~~l~~~~~~~------e~~~~l~~~~~G~i~iiigT~~~l~~~-----~~f~~Lgl~iiDE~h~f~~~~~~ 743 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAK------EQTQILAEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFGVRHKE 743 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHH------HHHHHHHHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSCHHHHH
T ss_pred HHHCCCCEEEEEECCCCHH------HHHHHHHHHCCCCCCEEECCHHHCCCC-----CCCCCCCEEEECHHHHHHHHHHH
T ss_conf 7511597899851776288------999999874389834474258880276-----02155673462425552198999
Q ss_pred HHHHHHHCCCCCEEEEEEECCC
Q ss_conf 9898740698825899980789
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
.+..... +..++ .+..+|.
T Consensus 744 ~~k~~~~--~~~~l-~~sATp~ 762 (1151)
T 2eyq_A 744 RIKAMRA--NVDIL-TLTATPI 762 (1151)
T ss_dssp HHHHHHT--TSEEE-EEESSCC
T ss_pred HHHHHCC--CCCEE-EECCCCC
T ss_conf 9985078--97588-5105687