HHsearch results for GI: 254781187 and protein with PDBid: 2fwr_A
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.06 E-value=0.00015 Score=45.51 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|+++|.+++..+..+- |..|.++-|+|||.++..++.. -+.++++++|+..-+.+ +-.+++
T Consensus 93 ~Lr~yQ~eav~~~~~~~------------~gvi~~pTGsGKT~ial~~i~~-----~~~~~LivvPt~~L~~Q-~~~~~~ 154 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK------------RGCIVLPTGSGKTHVAMAAINE-----LSTPTLIVVPTLALAEQ-WKERLG 154 (472)
T ss_dssp CBCHHHHHHHHHHTTTT------------EEEEECCTTSCHHHHHHHHHHH-----HCSCEEEEESSHHHHHH-HHHHGG
T ss_pred CCCHHHHHHHHHHHHCC------------CCEEECCCCCCHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 97999999999999679------------9899978998699999999998-----48999999787999999-999998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 999862312112333321000123332211113457761266-2101354455652101135862899975455998899
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI-TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~ 208 (367)
++.... + ..+.. ..+ ......+ +..... ...+. .+..+.++|+||+..++...+
T Consensus 155 ~~~~~~------------v--~~~~g-----~~~-~~~~i~i~t~~~~~-~~~~~----~~~~~~lvI~DE~h~~~~~~~ 209 (472)
T 2fwr_A 155 IFGEEY------------V--GEFSG-----RIK-ELKPLTVSTYDSAY-VNAEK----LGNRFMLLIFDEVHHLPAESY 209 (472)
T ss_dssp GGCGGG------------E--EEBSS-----SCB-CCCSEEEEEHHHHH-HTHHH----HTTTCSEEEEETGGGTTSTTT
T ss_pred HCCCCE------------E--EEECC-----CCC-CCCEEEEEEEHHHH-HCHHH----HCCCCCEEEEECHHHCCCHHH
T ss_conf 527844------------8--88526-----534-45508999616665-35786----423667899522020010013
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCH
Q ss_conf 9989874069882589998078999876
Q gi|254781187|r 209 KSILGFFTELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 209 e~i~g~Lt~~~~~~~~i~igNP~r~~g~ 236 (367)
..+.-.. ..+..+.++++|.+..+.
T Consensus 210 ~~i~~~~---~~~~~l~ltaT~~r~~~~ 234 (472)
T 2fwr_A 210 VQIAQMS---IAPFRLGLTATFEREDGR 234 (472)
T ss_dssp HHHHHTC---CCSEEEEEESCCCCTTSG
T ss_pred HHHHHCC---CCCEEEEEEEEEECCCCH
T ss_conf 5654225---400476310013035303