HHsearch results for GI: 254781187 and protein with PDBid: 2j0s_A
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.81 E-value=7.2e-05 Score=47.51 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997-089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~-~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|+++|.+++..+-++ . .+.|.|..|+|||......++.... .....++++++||...+.+..
T Consensus 55 ~g~~~pt~iQ~~ai~~~l~g----~--------dvlv~apTGsGKTl~f~lp~l~~~~~~~~~~~~lil~Pt~~l~~q~~ 122 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKG----R--------DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQ 122 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 79999899999999999869----9--------98998999836899999999983135667862899938399999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781187|r 125 WAEVSKWL 132 (367)
Q Consensus 125 w~ei~k~~ 132 (367)
..+.++.
T Consensus 123 -~~~~~~~ 129 (410)
T 2j0s_A 123 -KGLLALG 129 (410)
T ss_dssp -HHHHHHT
T ss_pred -HHHHHHH
T ss_conf -9999863