HHsearch results for GI: 254781187 and protein with PDBid: 2oca_A
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.54 E-value=1.5e-05 Score=51.76 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.||.+|.+++..+-.+- +..+.++.|+|||.+++.++.++.. ..+.++++++|+..-+.+. ..++.
T Consensus 113 ~~r~yQ~~ai~~~l~~~------------~~li~~pTGsGKTli~~~l~~~~~~-~~~~k~LiivP~~~Lv~Q~-~~~~~ 178 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQM-ADDFV 178 (510)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHH-HHHHH
T ss_conf 77799999999999779------------8699979980799999999999875-5798599997949999999-99998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
+..... .. ....+.. ...............+.+-++... .+ .-+. .+..++|+|||.......+.
T Consensus 179 ~~~~~~---~~---~v~~i~~----~~~~~~~~~~~~~i~i~t~qs~~~-~~---~~~~-~~~~~vIiDE~H~~~~~~~~ 243 (510)
T 2oca_A 179 DYRLFS---HA---MIKKIGG----GASKDDKYKNDAPVVVGTWQTVVK-QP---KEWF-SQFGMMMNDECHLATGKSIS 243 (510)
T ss_dssp HTTSSC---GG---GEEECGG----GCCTTGGGCTTCSEEEEEHHHHTT-SC---GGGG-GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCC---CC---CEEEECC----CCCCCCCCCCCCCEEEEECHHHHH-HH---HHHH-CCCCEEEEEHHHHHHHHHHH
T ss_conf 755676---54---3134226----533442025676099984323333-26---7651-35787997423320123588
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 98987406988258999807899987688
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY 238 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~Fy 238 (367)
.+...+.. ....+.+++++.+......
T Consensus 244 ~il~~~~~--~~~~l~~T~t~~~~~~~~~ 270 (510)
T 2oca_A 244 SIISGLNN--CMFKFGLSGSLRDGKANIM 270 (510)
T ss_dssp HHGGGCTT--CCEEEEEESCGGGCSSCHH
T ss_pred HHHHHHCC--CCHHEEEEECCCCCCCEEE
T ss_conf 99887511--0001144311358753023