HHsearch results for GI: 254781187 and protein with PDBid: 2wjy_A

>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=97.28  E-value=0.0083  Score=34.86  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf             2899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r   52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL  124 (367)
Q Consensus        52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l  124 (367)
                      ..=|.++++..-   +++         =..|.++=|+|||+.++.++.. +...+..+|+++|||-..+.+++
T Consensus       358 N~sQ~~AV~~al---~~~---------lsLIqGPPGTGKT~Ti~~iI~~-L~~~~~~kILVcApSN~AVD~l~  417 (800)
T 2wjy_A          358 NHSQVYAVKTVL---QRP---------LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT  417 (800)
T ss_dssp             CHHHHHHHHHHH---TSS---------EEEEECCTTSCHHHHHHHHHHH-HHTTCSSCEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHH---CCC---------CEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHH
T ss_conf             999999999996---499---------7289899999950999999999-99706898999948669999999