HHsearch results for GI: 254781187 and protein with PDBid: 2xgj_A
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5.5e-06 Score=54.37 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..|-.+. .+.|+|..|+|||.++...++- ++. .+.++++++|+..=+.+. +.+++
T Consensus 86 ~l~~~Q~~ai~~l~~g~------------~vlv~apTGSGKT~va~~~i~~-~l~-~~~rvl~l~Pt~~L~~Q~-~~~~~ 150 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGE------------SVLVSAHTSAGKTVVAEYAIAQ-SLK-NKQRVIYTSPIKALSNQK-YRELL 150 (1010)
T ss_dssp CCCHHHHHHHHHHHHTC------------EEEEECCTTSCHHHHHHHHHHH-HHH-TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHCCC------------CEEEEECCCCHHHHHHHHHHHH-HHH-CCCCEEEECCHHHHHHHH-HHHHH
T ss_conf 98999999999998399------------9999908986599999999999-996-099599998969999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781187|r 130 KWL 132 (367)
Q Consensus 130 k~~ 132 (367)
+..
T Consensus 151 ~~~ 153 (1010)
T 2xgj_A 151 AEF 153 (1010)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 755