HHsearch results for GI: 254781187 and protein with PDBid: 3cpe_A
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=100.00 E-value=2.8e-38 Score=252.37 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=218.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 54572337899997523201259888855430146-68884436668428999999988887512455555411247761
Q gi|254781187|r 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~-~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~ 83 (367)
-.+.++|++||.++ .+|..||.+|+.. |++= .++.-+--| .+.++|+++++.+.++ +|++ |.
T Consensus 122 ~~~~~~t~~~~~e~---~kc~~d~~yF~~~-y~~i~~~~~g~vpf-~l~~~Q~~~l~~~~~~-----------Rf~I-il 184 (592)
T 3cpe_A 122 NIKTQWTREMVEEW---KKCRDDIVYFAET-YCAITHIDYGVIKV-QLRDYQRDMLKIMSSK-----------RMTV-CN 184 (592)
T ss_dssp TCCCCCCHHHHHHH---HHHHTCHHHHHHH-TCBCCBTTTBSBBC-CCCHHHHHHHHHHHHC-----------SEEE-EE
T ss_pred CCCCCCCHHHHHHH---HHHHCCHHHHHHH-EEEEECCCCCEEEC-CCCHHHHHHHHHHHHC-----------CEEE-EE
T ss_conf 98667789999999---9874088999862-18998788984427-6769999999998743-----------7689-99
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48867889999999999997089977999715379999999999999998623121123333210001233322111134
Q gi|254781187|r 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 (367)
Q Consensus 84 sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (367)
+|||+|||+++|++++|+++++|+.+++++|++++|++.++ ..++..++.+|.. +.+.....+...+.
T Consensus 185 k~RQ~GKSt~~a~~~l~~al~~~~~~i~ivA~~~~~A~~i~-~~ik~~~~~lP~~-----------l~~~~~~~n~~~i~ 252 (592)
T 3cpe_A 185 LSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPDF-----------LQPGIVEWNKGSIE 252 (592)
T ss_dssp ECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHH-HHHHHHHTTSCTT-----------TSCCEEEECSSEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHHHHHCCHH-----------HCCCCCCCCCCEEE
T ss_conf 46988699999999999998299975999919899999999-9999999968133-----------04664346641267
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 577612662101354455652101135862899975455998--899998987406988258999807899987688754
Q gi|254781187|r 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 (367)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d--~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~ 241 (367)
..+|+.+... +.+..++||.+..++++|||++|++ ++|.++.++++.+.... ++++| |+.+.|.||+.|
T Consensus 253 ~~Ngs~i~~~-------a~~~da~RG~s~~~l~lDE~Afi~~~~e~~~~~~~~l~~g~~~k-iii~S-TpnG~n~fy~~~ 323 (592)
T 3cpe_A 253 LDNGSSIGAY-------ASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK-IIITT-TPNGLNHFYDIW 323 (592)
T ss_dssp ETTSCEEEEE-------ECCHHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCCE-EEEEE-CCCTTSHHHHHH
T ss_pred ECCCCEEEEE-------CCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCCCCCCCE-EEEEC-CCCCCCCCHHHH
T ss_conf 4587258750-------47886666776663275313204068888753023343688736-99977-998876327899
Q ss_pred HCC---CCCEEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECHHHHHHHHCCCC
Q ss_conf 112---23504675233328888--------9889999996216880002688864432778980782999864431577
Q gi|254781187|r 242 NIP---LEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 (367)
Q Consensus 242 ~~~---~~~w~~~~~~~~d~p~~--------~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~~~ 310 (367)
..+ .+.+..+.+.|.+.|.. +..|.....+..+.....|+++++|+|.. +.+.+|+...+..+.....
T Consensus 324 ~~a~~g~~~~~~~~~~w~~~per~~~d~~~~~~~~~w~~e~i~~~s~~~F~QEy~~eF~~-s~~~vf~~~~l~~~~~~~~ 402 (592)
T 3cpe_A 324 TAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEG-TSGTLISGMKLAVMDFIEV 402 (592)
T ss_dssp HHHHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHTTSCHHHHHHHHSCCCTT-SCSBSSCHHHHTTCCCCCC
T ss_pred HHHHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCC-CCCHHHHHHHHHHHCCCCC
T ss_conf 887407776674123434577633554210004379999987457755530143433234-5430567789876202222
Q ss_pred -----------CCCCCCCEEEEEECCC-CCCCEEEEEEEC--CCEEEEEHHHCHH
Q ss_conf -----------7788984899996387-788108999970--8836870420302
Q gi|254781187|r 311 -----------IDDLYAPLIMGCDIAG-EGGDKTVVVFRR--GNIIEHIFDWSAK 351 (367)
Q Consensus 311 -----------~~~~~~p~viGvDvAr-~G~D~Tvi~~r~--G~~v~~i~~~~~~ 351 (367)
.|.+...+++|+|||+ .|+|+||+.+.. +...++|.+|+..
T Consensus 403 ~~~~~~~~iye~p~~~~~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n 457 (592)
T 3cpe_A 403 TPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSN 457 (592)
T ss_dssp CCCSSSEEESSCCCTTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEES
T ss_pred CCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECC
T ss_conf 0347781332446766602688512445777732799941478761899998358