HHsearch results for GI: 254781187 and protein with PDBid: 3cpe_A

>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=100.00  E-value=2.8e-38  Score=252.37  Aligned_cols=308  Identities=14%  Similarity=0.116  Sum_probs=218.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf             54572337899997523201259888855430146-68884436668428999999988887512455555411247761
Q gi|254781187|r    5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS   83 (367)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~-~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~   83 (367)
                      -.+.++|++||.++   .+|..||.+|+.. |++= .++.-+--| .+.++|+++++.+.++           +|++ |.
T Consensus       122 ~~~~~~t~~~~~e~---~kc~~d~~yF~~~-y~~i~~~~~g~vpf-~l~~~Q~~~l~~~~~~-----------Rf~I-il  184 (592)
T 3cpe_A          122 NIKTQWTREMVEEW---KKCRDDIVYFAET-YCAITHIDYGVIKV-QLRDYQRDMLKIMSSK-----------RMTV-CN  184 (592)
T ss_dssp             TCCCCCCHHHHHHH---HHHHTCHHHHHHH-TCBCCBTTTBSBBC-CCCHHHHHHHHHHHHC-----------SEEE-EE
T ss_pred             CCCCCCCHHHHHHH---HHHHCCHHHHHHH-EEEEECCCCCEEEC-CCCHHHHHHHHHHHHC-----------CEEE-EE
T ss_conf             98667789999999---9874088999862-18998788984427-6769999999998743-----------7689-99


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             48867889999999999997089977999715379999999999999998623121123333210001233322111134
Q gi|254781187|r   84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG  163 (367)
Q Consensus        84 sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (367)
                      +|||+|||+++|++++|+++++|+.+++++|++++|++.++ ..++..++.+|..           +.+.....+...+.
T Consensus       185 k~RQ~GKSt~~a~~~l~~al~~~~~~i~ivA~~~~~A~~i~-~~ik~~~~~lP~~-----------l~~~~~~~n~~~i~  252 (592)
T 3cpe_A          185 LSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPDF-----------LQPGIVEWNKGSIE  252 (592)
T ss_dssp             ECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHH-HHHHHHHTTSCTT-----------TSCCEEEECSSEEE
T ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHHHHHCCHH-----------HCCCCCCCCCCEEE
T ss_conf             46988699999999999998299975999919899999999-9999999968133-----------04664346641267


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             577612662101354455652101135862899975455998--899998987406988258999807899987688754
Q gi|254781187|r  164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF  241 (367)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d--~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~  241 (367)
                      ..+|+.+...       +.+..++||.+..++++|||++|++  ++|.++.++++.+.... ++++| |+.+.|.||+.|
T Consensus       253 ~~Ngs~i~~~-------a~~~da~RG~s~~~l~lDE~Afi~~~~e~~~~~~~~l~~g~~~k-iii~S-TpnG~n~fy~~~  323 (592)
T 3cpe_A          253 LDNGSSIGAY-------ASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK-IIITT-TPNGLNHFYDIW  323 (592)
T ss_dssp             ETTSCEEEEE-------ECCHHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCCE-EEEEE-CCCTTSHHHHHH
T ss_pred             ECCCCEEEEE-------CCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCCCCCCCE-EEEEC-CCCCCCCCHHHH
T ss_conf             4587258750-------47886666776663275313204068888753023343688736-99977-998876327899


Q ss_pred             HCC---CCCEEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECHHHHHHHHCCCC
Q ss_conf             112---23504675233328888--------9889999996216880002688864432778980782999864431577
Q gi|254781187|r  242 NIP---LEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA  310 (367)
Q Consensus       242 ~~~---~~~w~~~~~~~~d~p~~--------~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~~~  310 (367)
                      ..+   .+.+..+.+.|.+.|..        +..|.....+..+.....|+++++|+|.. +.+.+|+...+..+.....
T Consensus       324 ~~a~~g~~~~~~~~~~w~~~per~~~d~~~~~~~~~w~~e~i~~~s~~~F~QEy~~eF~~-s~~~vf~~~~l~~~~~~~~  402 (592)
T 3cpe_A          324 TAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEG-TSGTLISGMKLAVMDFIEV  402 (592)
T ss_dssp             HHHHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHTTSCHHHHHHHHSCCCTT-SCSBSSCHHHHTTCCCCCC
T ss_pred             HHHHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCC-CCCHHHHHHHHHHHCCCCC
T ss_conf             887407776674123434577633554210004379999987457755530143433234-5430567789876202222


Q ss_pred             -----------CCCCCCCEEEEEECCC-CCCCEEEEEEEC--CCEEEEEHHHCHH
Q ss_conf             -----------7788984899996387-788108999970--8836870420302
Q gi|254781187|r  311 -----------IDDLYAPLIMGCDIAG-EGGDKTVVVFRR--GNIIEHIFDWSAK  351 (367)
Q Consensus       311 -----------~~~~~~p~viGvDvAr-~G~D~Tvi~~r~--G~~v~~i~~~~~~  351 (367)
                                 .|.+...+++|+|||+ .|+|+||+.+..  +...++|.+|+..
T Consensus       403 ~~~~~~~~iye~p~~~~~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n  457 (592)
T 3cpe_A          403 TPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSN  457 (592)
T ss_dssp             CCCSSSEEESSCCCTTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEES
T ss_pred             CCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECC
T ss_conf             0347781332446766602688512445777732799941478761899998358