HHsearch results for GI: 254781187 and protein with PDBid: 3dkp_A
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.30 E-value=3.9e-06 Score=55.29 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999708--997799971537999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~ 123 (367)
.+|..|++.|.+++..+-.+. .+.|.|+.|+|||......++-..... .+.++++++||..-+.++
T Consensus 47 ~g~~~ptpiQ~~ai~~il~g~------------dviv~apTGsGKT~~~~~~il~~~~~~~~~~~~~lil~Ptr~La~q~ 114 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLHGR------------ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 799999999999999997799------------88998799997758998898875542037884699858808986432
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254781187|r 124 LWAEVSKWLS 133 (367)
Q Consensus 124 lw~ei~k~~~ 133 (367)
. .++.++..
T Consensus 115 ~-~~~~~~~~ 123 (245)
T 3dkp_A 115 H-RELIKISE 123 (245)
T ss_dssp H-HHHHHHTT
T ss_pred H-HHHEECCC
T ss_conf 0-12000122