HHsearch results for GI: 254781187 and protein with PDBid: 3e1s_A
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.32 E-value=9.1e-06 Score=53.01 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
...+..+.|.++++.+..+ . -+.|.+|=|+|||+++..++-.+-. .+.+|+++|||..-++.. .
T Consensus 186 ~~~~l~~~Q~~Av~~~~~~-----------~-~~~i~G~aGTGKTt~l~~i~~~~~~--~~~~v~~~ApTgkAA~~L--~ 249 (574)
T 3e1s_A 186 ARKGLSEEQASVLDQLAGH-----------R-LVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRL--G 249 (574)
T ss_dssp TTTTCCHHHHHHHHHHTTC-----------S-EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHH--H
T ss_pred HHCCCCHHHHHHHHHHHCC-----------C-EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH--H
T ss_conf 4267789999999997059-----------8-8999899860099999999999986--798499878729999999--8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~ 206 (367)
+... ..+..+... ++.... .+ .....++ ....++|+||||.|+..
T Consensus 250 e~~~------------~~a~Tih~~----------L~~~~~-~~----~~~~~~~--------~~~dvlIIDEaSMv~~~ 294 (574)
T 3e1s_A 250 EVTG------------RTASTVHRL----------LGYGPQ-GF----RHNHLEP--------APYDLLIVDEVSMMGDA 294 (574)
T ss_dssp HHHT------------SCEEEHHHH----------TTEETT-EE----SCSSSSC--------CSCSEEEECCGGGCCHH
T ss_pred HHHC------------CCHHHHHHH----------HCCCCC-CC----CCCCCCC--------CCCCEEEEECCCCCHHH
T ss_conf 7428------------773889998----------605976-32----1011576--------65868999266622399
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCC-----CCCCHHHHHHH
Q ss_conf 9999898740698825899980789-----99876887541
Q gi|254781187|r 207 INKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFN 242 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~~~~i~igNP~-----r~~g~Fye~~~ 242 (367)
.+..+.-++.. +.++ +++|-|. ..++.|.+...
T Consensus 295 ~~~~Ll~a~~~-g~rl--IlvGD~~QLppV~~G~~~~~l~~ 332 (574)
T 3e1s_A 295 LMLSLLAAVPP-GARV--LLVGDTDQLPPVDAGLPLLALAQ 332 (574)
T ss_dssp HHHHHHTTSCT-TCEE--EEEECTTSCCCSSSCCHHHHHHH
T ss_pred HHHHHHHHCCC-CCEE--EEECCHHHCCCCCCCCHHHHHHH
T ss_conf 99999864536-8879--85068675477556847898851