HHsearch results for GI: 254781187 and protein with PDBid: 3fmp_B
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=97.40 E-value=0.00094 Score=40.66 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999-7089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~-~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+++..+-.+.. ..+.|.|..|+|||.....-++-.+ ....+.++++++||..-+.++
T Consensus 110 ~g~~~pt~iQ~~aip~il~~~g----------~dvlv~apTGSGKTlaf~lP~l~~l~~~~~~~~~lil~PtreLa~qi- 178 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPP----------QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT- 178 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSC----------CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHHCCC----------CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-
T ss_conf 7999999999999999981689----------95899848983799999999999763137886699994659999999-
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q gi|254781187|r 125 WAEVSKWLSM 134 (367)
Q Consensus 125 w~ei~k~~~~ 134 (367)
...+++....
T Consensus 179 ~~~~~~~~~~ 188 (479)
T 3fmp_B 179 GKVIEQMGKF 188 (479)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
T ss_conf 9999986302