HHsearch results for GI: 254781187 and protein with PDBid: 3h1t_A

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.82  E-value=4.9e-07  Score=60.78  Aligned_cols=170  Identities=14%  Similarity=0.106  Sum_probs=87.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCHHH
Q ss_conf             66684289999999888875124555554112477614886788999999999999708-------99779997153799
Q gi|254781187|r   47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-------PGMSIICIANSETQ  119 (367)
Q Consensus        47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-------~~~~v~~~A~t~~Q  119 (367)
                      ....||.+|.++++++.++..++..       |..|....|+|||.++..++..++..+       ...++++++++..-
T Consensus       175 ~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~~~~~~~~~~~~~rvl~l~dr~~L  247 (590)
T 3h1t_A          175 SGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVL  247 (590)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHH
T ss_conf             7998679999999999999983799-------659988999978999999999999841132234568869999536999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCCCEEEE
Q ss_conf             99999999999998623121123333210001233322111134577612662101354--4556521011358628999
Q gi|254781187|r  120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE--ERPDTFVGPHNTHGMAVFN  197 (367)
Q Consensus       120 ~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~ea~~g~h~~~~~l~iv  197 (367)
                      +.+.. ..+.   ...+..               ................+..-++...  ..+....-+-.....++|+
T Consensus       248 ~~Q~~-~~~~---~~~~~~---------------~~~i~~~~~~~~~~~~~~t~q~l~~~~~~~~~~~~~~~~~~~lIIi  308 (590)
T 3h1t_A          248 VDDPK-DKTF---TPFGDA---------------RHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII  308 (590)
T ss_dssp             --------CC---TTTCSS---------------EEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE
T ss_pred             HHHHH-HHHH---HHCCCC---------------CEEEECCCCCCCCCEEEEEEEEEHHHHHCHHHHHHCCCCCCEEEEE
T ss_conf             99899-9997---413665---------------4022114423566315776667202220113565427555169996


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH-HHHHHH
Q ss_conf             754559988999989874069882589998078999876-887541
Q gi|254781187|r  198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIFN  242 (367)
Q Consensus       198 DEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~-Fye~~~  242 (367)
                      |||......-.......+....+.....++++|.+..+. .++.|.
T Consensus       309 DEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~~~~~~~f~  354 (590)
T 3h1t_A          309 DECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG  354 (590)
T ss_dssp             SCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC
T ss_pred             EHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEHHCC
T ss_conf             0477403232115778887643445132244652236742201025