HHsearch results for GI: 254781187 and protein with PDBid: 3llm_A
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.0061 Score=35.68 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCH
Q ss_conf 888443666842899999998888751245555541124776148867889999999999997089---97799971537
Q gi|254781187|r 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSE 117 (367)
Q Consensus 41 ~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~---~~~v~~~A~t~ 117 (367)
+.+|.. +.+.++|+.|.+|. -+.|.++.|+|||+.+--+++....... .++|+||-|..
T Consensus 58 ~~LPi~------~~~~~il~~i~~n~------------vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR 119 (235)
T 3llm_A 58 ELLPVK------KFESEILEAISQNS------------VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR 119 (235)
T ss_dssp HTSGGG------GGHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH
T ss_pred HHCCCH------HHHHHHHHHHHHCC------------EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 849916------88999999999799------------799993898999999999999867642788886599963737
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781187|r 118 TQLKN 122 (367)
Q Consensus 118 ~Q~~~ 122 (367)
--+..
T Consensus 120 ~aa~s 124 (235)
T 3llm_A 120 ISAVS 124 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999