BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781187|ref|YP_003065600.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
         (367 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME
Sbjct: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL
Sbjct: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360

Query: 361 CPVGSSI 367
           CPVGSSI
Sbjct: 361 CPVGSSI 367


>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/359 (73%), Positives = 303/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG  IEHIFDWS   +  ++++
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRK 359


>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 262/359 (72%), Positives = 303/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG  IEHIFDWS   +  ++++
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRK 359


>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
 gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 516

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/359 (71%), Positives = 302/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP  
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359


>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
 gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 511

 Score =  545 bits (1403), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 252/359 (70%), Positives = 299/359 (83%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE   D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS   ++ TN +
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359


>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 255

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 224/255 (87%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS
Sbjct: 1   IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           LHP+ WY+++L  S+GIDSKHY+  CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I
Sbjct: 61  LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           N  ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID  FHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
           GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE   D YAPLIMGCDIA E
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240

Query: 328 GGDKTVVVFRRGNII 342
           GGD TVVV RRG +I
Sbjct: 241 GGDNTVVVLRRGPVI 255


>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
 gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
          Length = 499

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 22/333 (6%)

Query: 12  EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
           EQEL      A  + SF +    +V+  FPWG  G  L + + P +WQ E +E++     
Sbjct: 11  EQEL------ANDIASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQLR 64

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
           +   +    I + A+++G GIGK+ L +W++ W + T      +  AN+E+QL+   W E
Sbjct: 65  AGAKDRGEVI-REAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPE 123

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           V+KW  +    HWF++   +L  +    E          K++ I    +S+   + F G 
Sbjct: 124 VAKWNRLSITAHWFKLTGTALISTDPDHE----------KNWRIDAVPWSDTNTEAFAGL 173

Query: 188 HNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           HN    + +  DEAS   D++ +   G  T+ +    W    N  R +G F + F     
Sbjct: 174 HNEGKRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKH 233

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            W+  Q+D+RTV+G +       I+ YG DSD  RI + G FP+      IP +++ EAM
Sbjct: 234 RWRHRQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAM 293

Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
            R+ +  L   L+ G DIA  G D  V+ FRRG
Sbjct: 294 RRDGVYGLDDALVCGIDIARGGMDNNVIRFRRG 326


>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
          Length = 491

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 15/313 (4%)

Query: 30  NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
            + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A+++G GIG
Sbjct: 25  GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ALASGHGIG 82

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++
Sbjct: 83  KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
            +          +G D K +      +SE   + F G HN    + V  DEAS   D++ 
Sbjct: 143 SN---------DLGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +   G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    + 
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
            +  YG DSD  +I + G FP      FIP    +EAM R   A    YAP+I+G D A 
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAYAPVIIGVDPAY 312

Query: 327 EGGDKTVVVFRRG 339
            G D  V+  R+G
Sbjct: 313 SGVDDAVIYLRQG 325


>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
 gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
          Length = 493

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 154/345 (44%), Gaps = 30/345 (8%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M     LS+    +  FPWG  G  LE+ S P +WQ E +  + 
Sbjct: 1   MIETMSPEEQLINDIGMFTHDPLSY---ALYAFPWGEAGTELENASGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            W E++KW  +   + WF     ++      H + W A+ +                 +S
Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDPNHANAWRADAV----------------PWS 159

Query: 178 EERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
           E   + F G HN     +   DEAS   D++ +   G  T+ N    WI   N  R  G 
Sbjct: 160 ENNTEAFAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGR 219

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F + F      WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      F
Sbjct: 220 FRECFRKFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQF 279

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           IP    + AM R     +  +AP+I+G D A  G D  V+  R+G
Sbjct: 280 IPTGLTDAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQG 324


>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 500

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 16/313 (5%)

Query: 30  NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
            FV+  FPWG  G   ++   P  WQ E +  +     +    S  ++ + A+S+G G+G
Sbjct: 31  GFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGA--SAASVIREAVSSGHGVG 87

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+ L AW++LW +ST      +  AN+E QLK   WAE++KW  +    +WF+  + +  
Sbjct: 88  KSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCTATA-- 145

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIIN 208
                  L+    G + K + +    +SE   + F G HN    + +  DEAS  PD I 
Sbjct: 146 -------LISTQAGHE-KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAIPDAIW 197

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +   G  T+ +    W    N  R  G F + F      W   ++D+RT    D      
Sbjct: 198 EVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDKNQLAQ 257

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAG 326
            +  YG DSD  R+ + G+FP+     FI  + + EA  R    D Y  AP I+G D+A 
Sbjct: 258 WVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILGVDVAR 317

Query: 327 EGGDKTVVVFRRG 339
            G D++V+  R+G
Sbjct: 318 SGSDQSVITRRQG 330


>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
 gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
          Length = 493

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 155/345 (44%), Gaps = 30/345 (8%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M     LS+  +    FPWG  G  LE+ + P +WQ E +  + 
Sbjct: 1   MIDTMSPEEQLINDIGMFTHDPLSYALYA---FPWGEAGTELENANGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            W E++KW  +   + WF     ++      H + W A+ +                 +S
Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDPNHANAWRADAV----------------PWS 159

Query: 178 EERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
           E   + F G HN    + +  DEAS   D++ +   G  T+ N    WI   N  R  G 
Sbjct: 160 ENNTEAFAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGR 219

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F + F      WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      F
Sbjct: 220 FRECFRKFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQF 279

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           IP    + AM R     +  +AP+I+G D A  G D  V+  R+G
Sbjct: 280 IPTGLTDAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQG 324


>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
 gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
          Length = 495

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 157/342 (45%), Gaps = 23/342 (6%)

Query: 7   TDQKL--EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           TD  L  E++L E L+  + + SF +    + +  FPWG  G  L H S P +WQ +   
Sbjct: 2   TDAALSPEEQLKEQLI--DDIASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFR 59

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H  +      P +   A  +G GIGK+   + ++ W +ST     ++  AN++ QL
Sbjct: 60  EIGEHLQNPATRHQPLMISRA--SGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQL 117

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +   W E+ KW ++   + WF   + +++ +           G D K +      +SE  
Sbjct: 118 RTKTWPEIIKWSNLAITKEWFTCTATAMYSN---------DPGHD-KRWRADAIPWSEHN 167

Query: 181 PDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            + F G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F +
Sbjct: 168 TEAFAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRE 227

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
            F      WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP      FIP 
Sbjct: 228 CFRKYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPT 287

Query: 300 NYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
              +EAM R   A    +AP I+G D A  G D  V+  R+G
Sbjct: 288 GLTDEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQG 329


>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 144/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG  G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIVVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  ++ + G FP      FIP    +EAM R   A+   +AP I+G D A  
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVVTAVQVAHAPRIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
          Length = 491

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
          Length = 491

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +          +G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DLGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
          Length = 491

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 491

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
 gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
          Length = 491

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 491

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
          Length = 491

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
          Length = 491

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 491

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 144/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG  G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEDGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 487

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 160/325 (49%), Gaps = 29/325 (8%)

Query: 31  FVMRFFPWG---IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           FV   F W    +KG+       P  WQ++ ++ V          S  T  + A ++G G
Sbjct: 22  FVYFAFDWDSEELKGQ------NPQTWQIKTLKEVGEGL------SLSTALQHATASGHG 69

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           IGK+ L AW++LW ISTRP    +  AN+ TQL+   WAE+SKW  +   + +F + S +
Sbjct: 70  IGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWYHLFRGKKFFTLTSTA 129

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDI 206
           +       E  E++  ID+  +++       +R ++F G HN  + + +  DEAS   + 
Sbjct: 130 IFCR---QEGHERTWRIDAIPWSV-------DRTESFAGLHNQGNRLLLIFDEASAIDNK 179

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           I +   G  T+ +    W++  N  R  G F+D F+   + W   +ID+RTV+  +    
Sbjct: 180 IWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQKIDSRTVDISNKTQL 239

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL---YAPLIMGCD 323
           +  I  YG+DSD  ++ +LG+FP      FI    +  A  R  +      +AP I+G D
Sbjct: 240 QKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPLRTAEYDFAPCIIGMD 299

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDW 348
            A  GGD TV+  R+G   E + ++
Sbjct: 300 PAWTGGDSTVIFLRQGFFSEKLAEY 324


>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
 gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
          Length = 491

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 155/338 (45%), Gaps = 21/338 (6%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           IST+++L +++      A        + +  FPWG  G  L H + P +WQ +    +  
Sbjct: 6   ISTEEQLVEDI------ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +           G D K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSN---------DPGHD-KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG +SD  ++ + G FP      FIP    +
Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           EAM R   A    +AP+I+G D A  G D  V+  R+G
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQG 325


>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
          Length = 480

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 145/313 (46%), Gaps = 15/313 (4%)

Query: 30  NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
            + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIG
Sbjct: 14  GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 71

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++
Sbjct: 72  KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 131

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
            +           G D K +      +SE   + F G HN    + V  DEAS   D++ 
Sbjct: 132 SN---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 181

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +   G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    + 
Sbjct: 182 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 241

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
            +  YG DSD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A 
Sbjct: 242 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 301

Query: 327 EGGDKTVVVFRRG 339
            G D  V+  R+G
Sbjct: 302 SGVDDAVIYLRQG 314


>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
 gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
          Length = 491

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  +I + G FP      FIP    +EAM R   A    ++P+I+G D A  
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHSPVIIGVDPAYS 313

Query: 328 GGDKTVVVFRRG 339
           G D  V+  R+G
Sbjct: 314 GVDDAVIYLRQG 325


>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
 gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
          Length = 491

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 15/313 (4%)

Query: 30  NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
            + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIG
Sbjct: 25  GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++
Sbjct: 83  KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
            +           G D K +      +SE   + F G HN    + V  DEAS   D++ 
Sbjct: 143 SN---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +   G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    + 
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
            +  YG  SD  +I + G FP      FIP    +EAM R   A    +AP+I+G D A 
Sbjct: 253 WVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312

Query: 327 EGGDKTVVVFRRG 339
            G D  V+  R+G
Sbjct: 313 SGVDDAVIYLRQG 325


>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
          Length = 493

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 15/321 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPIML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKEQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  ++ + G FP    N FIP    + A+ R        +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313

Query: 328 GGDKTVVVFRRGNIIEHIFDW 348
           G D  V+  R+G   + + +W
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEW 334


>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 493

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 15/321 (4%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG  G  L H + P +WQ +    +  H  +      P +   A ++G GIGK
Sbjct: 26  YALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   + +++ 
Sbjct: 84  SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
           +           G D K +      +SE   + F G HN    + V  DEAS   D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
              G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +    +  
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQKW 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
           +  YG DSD  ++ + G FP    N FIP    + A+ R        +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313

Query: 328 GGDKTVVVFRRGNIIEHIFDW 348
           G D  V+  R+G   + + +W
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEW 334


>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 483

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 17/337 (5%)

Query: 14  ELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
           E H+ L+ A   L+     FV   +PWG  G PLE+   P  WQ++ ++  D+       
Sbjct: 2   EKHDELIEALGALTHDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILK--DIGEQLKKG 59

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
               T  + A+++G GIGK+ L +W++ + IST      +  AN+E QL+   W E+SKW
Sbjct: 60  KDLQTAIQEAVASGHGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKW 119

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190
            +M   +  F   + ++  S    E          K + I    +S+  P++F G HN  
Sbjct: 120 HNMFIAKDLFTYTATAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQG 169

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
           + + V  DEAS   D+I +   G  T+ N    W    N  R +G F + F    + W  
Sbjct: 170 NRILVLFDEASAIDDVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNT 229

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           YQID+RTV+  +    E  +  YG DSD  ++ + G FP      FI     ++A  +  
Sbjct: 230 YQIDSRTVKISNKTKIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVY 289

Query: 311 IDDLYA--PLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
               +   P+I+G D A  G D   +V R+G  ++ +
Sbjct: 290 KPGQFEHLPVIIGVDPAWTGSDSLEIVMRQGYYMKSL 326


>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
 gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
          Length = 494

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 151/344 (43%), Gaps = 33/344 (9%)

Query: 9   QKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           + L++   E L+  E + SF +    +    FPWG  G  LE ++ P +WQ E +  +  
Sbjct: 3   EALQKSPEEQLI--EDIASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGE 60

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W + T     ++  AN+E QL+   
Sbjct: 61  HLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKT 118

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           W E++KW  +    +WF     ++      H + W A+ +                 +SE
Sbjct: 119 WPEIAKWQRLSLTNNWFTCTKTAIYSNDPNHANAWRADAV----------------PWSE 162

Query: 179 ERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              + F G HN     +   DEAS   D++ +   G  T+      WI   N  R  G F
Sbjct: 163 NNTEAFAGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRF 222

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
            + F      W   QID+RTVEG +    +     YG DSD  ++ + G FP      FI
Sbjct: 223 RECFRKFKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFI 282

Query: 298 PHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           P    +EAM R     +  +AP+I+G D A  G D  V+  R+G
Sbjct: 283 PTGLTDEAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQG 326


>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
 gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
          Length = 490

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 27/318 (8%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           + +  FPWG +G  L +   P +WQ +  + +  H  +      P +   A  +G GIGK
Sbjct: 25  YALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTRHQPLMIGRA--SGHGIGK 82

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL-- 148
           +   + ++ W + T     ++  AN+E QL+   W E++KW  +   + WF   + ++  
Sbjct: 83  SAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITQDWFTCTATAIYS 142

Query: 149 ----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF-NDEASGT 203
               H   W A+ +                 +SE   + F G HN     +   DEAS  
Sbjct: 143 NDPSHAKSWRADAI----------------PWSENNTEAFAGLHNERKRIILIFDEASNI 186

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            D++ +   G  T+ N    W+   N  R  G F + F      WK  QID+R+VEG + 
Sbjct: 187 ADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTAQIDSRSVEGTNK 246

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMG 321
              +  +  YG DSD  ++ + G FP      FIP    + A+ R        +A  ++G
Sbjct: 247 EQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVITPGQVAHAATVIG 306

Query: 322 CDIAGEGGDKTVVVFRRG 339
            D A +GGD  V+  R+G
Sbjct: 307 VDPAHQGGDPAVIYLRQG 324


>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
 gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
          Length = 461

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 146/301 (48%), Gaps = 50/301 (16%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P  WQ E ++A+           NP +   A+ +G G+GKT L AW +LW + TRP  
Sbjct: 25  AEPDDWQAETLQAL---------ADNPRV---AVRSGHGVGKTALEAWALLWFLFTRPYP 72

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSL----HPSGWYAELLEQSMG 163
            I C A +  QL + LWAE SKWL   P  + +FE Q   +    +P  W+A        
Sbjct: 73  KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQYPGRWFA-------- 124

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                   T RT +  +P+   G H  H + +  DEASG  D I ++I G  T  +    
Sbjct: 125 --------TARTSN--KPENMAGFHEEHLLFII-DEASGIADNIFETIEGALTTSDAK-- 171

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----FHEGIISRYGLDSD 278
            +M  N  + +G F+D F    +D   Y   TR V  +DS      + E +  +Y  DSD
Sbjct: 172 LLMCGNPTKNSGVFHDAF---FKDRSLYW--TRKVSCLDSQRVTLEYAERLKRKYHEDSD 226

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           V R+ +LG+FP+ E + FI  + +E A  R+   D    L +G D+A  G D+TV+  R 
Sbjct: 227 VYRVRVLGEFPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARA 284

Query: 339 G 339
           G
Sbjct: 285 G 285


>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
 gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 17/264 (6%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           ++ +G GIGK+ + AW ++W + T P   I C A ++ QL + LWAE+SKW      R+ 
Sbjct: 44  SVRSGHGIGKSAVEAWSVIWFMCTHPYPKIPCTAPTQHQLFDILWAEISKW-----KRNN 98

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             + S  +    W  E L   M   ++ +    RT S   PD   G H  H + +  DEA
Sbjct: 99  KTLDSELI----WTKEKL--YMKGHAEEWFAVARTAST--PDALQGFHAEHMLYII-DEA 149

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
           SG  D I + +LG  +   P    +M  N  +L+G+FYD  N   E +  + ID R    
Sbjct: 150 SGVEDKIFEPVLGALS--TPGAKLLMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTR 207

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI- 319
           +   F + II+ YG DSDV R+ + G FP  E + +IP   +E++++ E     +  +I 
Sbjct: 208 VSQEFVQTIINMYGEDSDVFRVRVAGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIH 267

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIE 343
           +GCD+A  G DKTV+ +R    ++
Sbjct: 268 IGCDVARFGTDKTVIGYRTDEKVQ 291


>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
 gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
          Length = 513

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 25/324 (7%)

Query: 31  FVMRFFPWGIK------------GKPLEHFSQPHRWQLEFMEAV-DVHCHSNVNNSNPT- 76
           FVM  +PW                   +    P  W  E  + + +V   ++ N  +P  
Sbjct: 27  FVMYAYPWDTDPDLQIVKLPEPWASKYDSVYGPDAWFCEMCDQLQEVIRKNDFNGVDPVD 86

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            F  +IS+G GIGK+  ++W++ +++STRP    +  +N+  QL+   W E+ KW   L 
Sbjct: 87  AFLYSISSGHGIGKSCASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGKWTKKLI 146

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           ++HWF   +   + + ++ +  E +  +D++    TCR   EE  ++F G H       +
Sbjct: 147 NKHWFVYNNGKGNMNFYHKDYAE-TWRVDAQ----TCR---EENSESFAGLHCASSTPWY 198

Query: 197 -NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             DEAS  PD I +   G  T+  P  FW +  N  R +G F + +    + W R QID+
Sbjct: 199 LFDEASAVPDKIWEVAEGGLTDGEP--FWFVFGNPTRNSGRFRECWRRFRQRWNRKQIDS 256

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
            TV+  +        S YG DSD  R+ + G FP    N  I    +E AMSR A     
Sbjct: 257 STVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRTAHVIPG 316

Query: 316 APLIMGCDIAGEGGDKTVVVFRRG 339
           +P +M  D+A  GGD  V  FR G
Sbjct: 317 SPRVMSLDVARGGGDNCVFRFRHG 340


>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
          Length = 462

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 42/300 (14%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P  WQ       D+   +  +N      + A+ AG G+GKT   AW +LW + TRP  
Sbjct: 31  AEPDEWQ-------DIALQALADNQ-----RVAVRAGHGVGKTATEAWAVLWFLLTRPFP 78

Query: 109 SIICIANSETQLKNTLWAEVSKWL----SMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMG 163
            I C A ++ QL + LW E++KWL     + P+  W + +  +  +   W+A        
Sbjct: 79  KIPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQYEERWFA-------- 130

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                   T RT +  +P+   G H  H + V  DEASG  + I ++I G  T       
Sbjct: 131 --------TARTSN--KPENMAGFHEEHLLFVI-DEASGVDNAIFETIDGALTTAGSK-- 177

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
            +M  N  R NG FYD F+   + +  Y+I     +     +   +  +YG DSD+ R+ 
Sbjct: 178 LVMFGNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVR 237

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
           + G+FPQ + ++FIP   +E+A  R  E ID+    L +G D+A  G D+TV+  R G +
Sbjct: 238 VQGEFPQGDPDSFIPLELVEDARVRDLEWIDE--DELHIGVDVARFGSDETVLAARIGPV 295


>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 471

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)

Query: 35  FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P+   G  ++++  +P  +  + +         NV N      K ++ +G+G+GKT L
Sbjct: 5   FIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    ++  +     ++  G 
Sbjct: 65  EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      DS+ +  T RT +  +P+   G H  H M +  DEASG  D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
             +  + N+  +M  N   + G FYD  N   + ++ +++ +   +  +    E I+ +Y
Sbjct: 170 TLSGFD-NKL-LMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEGGD 330
           G +SDVAR+ I G+FP+  +++FI    +E A  ++  D L        +G D+A  G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287

Query: 331 KTVVVFR 337
            T++  R
Sbjct: 288 STILFPR 294


>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 471

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)

Query: 35  FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P+   G  ++++  +P  +  + +         NV N      K ++ +G+G+GKT L
Sbjct: 5   FIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    ++  +     ++  G 
Sbjct: 65  EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      DS+ +  T RT +  +P+   G H  H M +  DEASG  D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
             +  + N+  +M  N   + G FYD  N   + ++ +++ +   +  +    E I+ +Y
Sbjct: 170 TLSGFD-NKL-LMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEGGD 330
           G +SDVAR+ I G+FP+  +++FI    +E A  ++  D L        +G D+A  G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287

Query: 331 KTVVVFR 337
            T++  R
Sbjct: 288 STILFPR 294


>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
          Length = 484

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 127/262 (48%), Gaps = 33/262 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH- 139
           ++ +G GIGK+ + AW ++W + TRP   I C A +E QL + LWAE+SKW+   P    
Sbjct: 44  SVRSGHGIGKSAVEAWSVIWYMCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRD 103

Query: 140 ---WF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              W  E   +  HP  W+A                  RT +   P+   G H  H + +
Sbjct: 104 DLIWTKEKLYMQGHPEEWFA----------------VPRTATN--PEALQGFHAEHVLYI 145

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             DEASG  D + + +LG  T    +   +M  N  RL G+FYD  +   E +    +D 
Sbjct: 146 I-DEASGVSDKVFEPVLGAMT--GEDAKLLMMGNPTRLAGFFYDSHHRNREQYSAIHVDG 202

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
           R  + +   F + II  +G DSDV R+ + GQFP+   ++ I   + EEA + +    +Y
Sbjct: 203 RDSQHVSRTFVQKIIDMFGEDSDVFRVRVAGQFPKSTPDSLIAMEWCEEAANLQ----VY 258

Query: 316 AP---LIMGCDIAGEGGDKTVV 334
           AP   + +G D+A  G D + +
Sbjct: 259 APGGQIDIGVDVARYGDDSSAL 280


>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
 gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
          Length = 462

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 42/331 (12%)

Query: 42  GKPLEHF------SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            K LE F      ++P + Q++ + A+D               K +I +G G GKTTL A
Sbjct: 13  AKSLEFFVRVILKAKPTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLA 61

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
           W++LW    R    I   A +  QL + L  E+ KW   +P ++  E+            
Sbjct: 62  WIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEV------------ 109

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           E+  + +   + ++ +  RT  +++P+   G H T+ +A   DEASG P +I +   G  
Sbjct: 110 EVKTEKIDFANGNFAVP-RTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAM 167

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           T    +   IM +N  R  G+FYD  +     W+ +Q +    E +   + E    +YG 
Sbjct: 168 T--GESTLVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGE 225

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           DSDV R+ I G+FP+Q  N       +++A +RE +DD  A  + G D+A  G DK+V+ 
Sbjct: 226 DSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTREIVDDSGAE-VWGLDVADFGDDKSVLA 284

Query: 336 FRRGNIIEHIF--------DWSAKLIQETNQ 358
            R+G     I         D +  LI E NQ
Sbjct: 285 KRKGKHFHEITARSGLTLPDLAGWLIYEYNQ 315


>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 495

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 136/311 (43%), Gaps = 54/311 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ E +  +  H H +V             +G+G+GKT + +W+ +W +  RP   
Sbjct: 40  EPDPWQKEVLNDIANHSHVSVR------------SGQGVGKTAMESWICIWFLCCRPYPK 87

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG----WYAELLEQSMGID 165
           IIC A ++ QL + LWAE++KWL+    +   +     ++  G    W+A          
Sbjct: 88  IICTAPTKQQLYDVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGFEDRWFA---------- 137

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                 T +T +  RP+   G H  + M    DEASG  D I ++ILG  +      F  
Sbjct: 138 ------TAKTAT--RPENMQGFHEDY-MLFIADEASGIADDIMEAILGTLSGSENKLF-- 186

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           M  N  + +G F+D  N     +K +++ +           E +  +YG  SDV R+ + 
Sbjct: 187 MCGNPTKTSGVFFDSHNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVE 246

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------------APLIMGCDIAGEG 328
           G+FP+ E + FI     E A  RE                       A + +GCD+A  G
Sbjct: 247 GEFPRGEADAFISLETAEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFG 306

Query: 329 GDKTVVVFRRG 339
            D+T++  RRG
Sbjct: 307 SDETIIATRRG 317


>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 459

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++ +G+G+GKT L + +++W +  RP   +IC A ++ QL   LWAE++KWL     +
Sbjct: 39  KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLEGSAVK 98

Query: 139 HWFEMQSLSLHPSG----WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +  +     ++  G    W+A                T RT +  +P+   G H  + M 
Sbjct: 99  NLLKWTKTRVYMIGSEERWFA----------------TARTAT--KPENMQGFHEDY-ML 139

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
              DEASG  D I ++ILG  +      F  +  N  R +G FYD  N   + +K +++ 
Sbjct: 140 FVCDEASGIADPIMEAILGTLSGAENKLF--LCGNPTRTSGVFYDSHNRDRDLYKIHKVS 197

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
           +           E +  +YG  SDV R+ +LG+FP+ E + FIP   +E+A S + ++  
Sbjct: 198 SLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCK-VEPT 256

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
              L +G D+A  G D+TV+  R GN +  + +   +   ET
Sbjct: 257 GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMET 298


>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
 gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
          Length = 459

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++ +G+G+GKT L + +++W +  RP   +IC A ++ QL   LWAE++KWL     +
Sbjct: 39  KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLEGSAVK 98

Query: 139 HWFEMQSLSLHPSG----WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +  +     ++  G    W+A                T RT +  +P+   G H  + M 
Sbjct: 99  NLLKWTKTRVYMIGSEERWFA----------------TARTAT--KPENMQGFHEDY-ML 139

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
              DEASG  D I ++ILG  +      F  +  N  R +G FYD  N   + +K +++ 
Sbjct: 140 FVCDEASGIADPIMEAILGTLSGAENKLF--LCGNPTRTSGVFYDSHNRDRDLYKIHKVS 197

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
           +           E +  +YG  SDV R+ +LG+FP+ E + FIP   +E+A S + ++  
Sbjct: 198 SLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCK-VEPT 256

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
              L +G D+A  G D+TV+  R GN +  + +   +   ET
Sbjct: 257 GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMET 298


>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
 gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 469

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 136/280 (48%), Gaps = 21/280 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++ +G+G+GKT L +  + W + TRP   +I  A +  QL + LWAE+SKWLS     
Sbjct: 44  KVSVRSGQGVGKTGLESIAITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVD 103

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    ++ +G+             + +  T RT    RP+   G H  + + V  D
Sbjct: 104 KLLRWTKTKIYMNGF------------EERWWATARTAV--RPENMQGFHEDYMLFVV-D 148

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EASG  D I ++ILG  T    N+  ++  N  + +G FYD  N   + +K +++ +   
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LLCGNPTKTSGTFYDSHNRDRDTYKSHKVSSMDS 206

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP- 317
                   E +  +YG DSDV R+ +LG FP+ E ++ I     E+A   E + D+    
Sbjct: 207 PRTSKENIEMLKKKYGADSDVFRVRVLGDFPKGEADSLISLEVTEQAA--ETVVDISNAY 264

Query: 318 -LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
            L +G DIA  G DKT++  R GN +  +  +S K   ET
Sbjct: 265 TLNIGADIARFGDDKTIIAPRIGNRVLDLQQYSKKDTMET 304


>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
 gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
          Length = 476

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 132/265 (49%), Gaps = 17/265 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K AI +G+G+GKT + A  +LW +   P   I+  A ++ QL + LW+EVSKW+S  P  
Sbjct: 52  KVAIKSGQGVGKTGMEAVALLWFLCCYPYPRIVATAPTKQQLHDVLWSEVSKWMSKSP-- 109

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               + S  L  +  Y  ++      + K +    RT +  +P+   G H  + M    D
Sbjct: 110 ----LLSDILKWTKTYIYMVG-----NEKRWFAVARTAT--KPENMQGFHEDN-MLFIVD 157

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EASG  D I ++ILG  +    N   +M  N  R +G FYD FN+    ++ + + +   
Sbjct: 158 EASGVADPIMEAILGTLS--GANNKLLMCGNPTRTSGTFYDAFNVDRSIYRCHTVSSADS 215

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           +  +    E +I +YG DS+V  + + G+FP+QE + FI  + +E     +  DD+    
Sbjct: 216 KRTNKQNIESLIRKYGKDSNVVLVRVFGEFPKQEDDVFIALSIVEHCCMLDLPDDVPIKR 275

Query: 319 I-MGCDIAGEGGDKTVVVFRRGNII 342
           I  G D+A  G D+TV+    G  I
Sbjct: 276 ISFGVDVARYGSDETVIAKNVGGRI 300


>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 484

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 20/264 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++ +G+G+GKT L A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    +
Sbjct: 50  KVSVRSGQGVGKTALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIK 109

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              +     ++  G            DS+ +  T RT +  +P+   G H  H M +  D
Sbjct: 110 DLLKWTKTKIYMVG------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVD 154

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EASG  D I ++ILG  +  + N+  +M  N   + G FYD  N   + ++ +++ +   
Sbjct: 155 EASGVADPIMEAILGTLSGFD-NKL-LMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDS 212

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           +  +    + +I +YG +SDVAR+ I G+FP+  +++FI    +E A      D     +
Sbjct: 213 KRTNKENIQMLIDKYGENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHV 272

Query: 319 I---MGCDIAGEGGDKTVVVFRRG 339
               +G D+A  G D T+V  R G
Sbjct: 273 REGHIGVDVARFGDDSTIVFPRIG 296


>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
 gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
          Length = 484

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 27/259 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH- 139
           ++ +G G+GK+ + +W ++W + TRP   I C A ++ QL + LWAE+SKWL   P    
Sbjct: 44  SVRSGHGVGKSAVESWSVIWFLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKN 103

Query: 140 ---WFEMQS-LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              W + +  ++ +P  W+A                  RT +   P+   G H  H + +
Sbjct: 104 DIIWTQQRVYMNGYPEEWFA----------------VPRTATN--PEALQGFHAEHVLYI 145

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             DEASG  D + + +LG  T    +   +M  N  RL+G+F+D  +    ++    ID 
Sbjct: 146 I-DEASGVSDKVFEPVLGAMT--GEDAKLLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDG 202

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
           R  + ++  F + II+ +G+DSDV R+ + GQFP+   ++ I  ++ E A   +  + + 
Sbjct: 203 RDSQHVNQKFVQKIINMFGMDSDVFRVRVAGQFPKSTPDSLIMMDWCEAATQLKP-ETVR 261

Query: 316 APLIMGCDIAGEGGDKTVV 334
             + +G D+A  G D + +
Sbjct: 262 NRVDIGVDVARYGDDSSAL 280


>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 470

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 36/288 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++ +G+G+GKT L + ++ W + TRP   +I  A +  QL + LWAE+SKWL+     
Sbjct: 44  KVSVRSGQGVGKTGLESIVVTWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLASSKIE 103

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +  E     ++  G+            S+ +  T +T +  RP+   G H  + + V  D
Sbjct: 104 NLLEWTKTKIYMKGY------------SERWWATAKTAT--RPENMQGFHEDYMLFVV-D 148

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--- 255
           EASG  D I ++ILG  T    N+  +M  N  R +G FYD  N   + +K +++ +   
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LMCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLES 206

Query: 256 -RT----VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            RT    +E +   +HEG        SDV R+ + G+FP+ E ++ I   Y E A +   
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDVWRVRVEGEFPKGESDSLISLEYAETA-TITK 257

Query: 311 IDDLYA--PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
           I++++    L +G DIA  G D++V+  R GN +  +  ++ K   ET
Sbjct: 258 INNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDLLTYTKKDTMET 305


>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
 gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
          Length = 469

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 35/287 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K +I +G+G+GKT L +   +W +STRP   ++  A +  QL + LWAE++KWLS     
Sbjct: 44  KVSIRSGQGVGKTGLESIATVWYLSTRPFPKVVATAPTRQQLYDVLWAEIAKWLSNSKVE 103

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              E     ++  G+             + +  T RT    +P+   G H  + + V  D
Sbjct: 104 KLLEWTKTKVYMKGF------------EERWWATARTAV--KPENMQGFHEDYMLFVV-D 148

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--- 255
           EASG  D I ++ILG  +    N+  ++  N  R +G FYD  N   + +K +++ +   
Sbjct: 149 EASGVADPIMEAILGTLSGAE-NKL-LLCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLDS 206

Query: 256 -RT----VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            RT    +E +   +HEG        SD  R+ +LG+FP+ E ++ I    +E +  RE 
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDPWRVRVLGEFPKGESDSLISLEAVETSTIREV 258

Query: 311 -IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
            I + Y  L +G DIA  G D+T++  R G  +  +  +S K   ET
Sbjct: 259 NISNDYI-LNIGADIARYGDDETIIAPRIGGKVFDLLTYSKKDTMET 304


>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 473

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 41/293 (13%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ +   A D+        +NP   K +I +G+G+GKT L A + LW ++  P   
Sbjct: 17  EPDEWQAQ--AARDLA-------ANP---KVSIKSGQGVGKTGLEAAVFLWFVTCFPHPR 64

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+  A ++ QL + LW+E+SKW+S        E+ S+ L  +  Y  ++ +      K +
Sbjct: 65  IVATAPTKQQLHDVLWSEISKWMSK------SELLSILLKWTKTYVYMVGE-----EKRW 113

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               RT +  +P+   G H  + M    DEASG  D I ++ILG  +  N N+  ++  N
Sbjct: 114 FGVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGAN-NKL-LLCGN 168

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQI----DTRT-VEGIDSGFHEGIISRYGLDSDVARIEI 284
             + +G FYD        +K + +     TRT  E IDS     ++ +YG DS+V R+ +
Sbjct: 169 PTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDS-----LVRKYGWDSNVVRVRV 223

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP--LIMGCDIAGEGGDKTVV 334
            G+FP QE + FIP + IE+  S+   +DD      + +G D+A  G D+T++
Sbjct: 224 RGEFPNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETII 276


>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 506

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 33/289 (11%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + +  +D+   S V          A+ +G+G+GKT + A  +LW +S      
Sbjct: 49  EPDEWQRDAL--MDLAEESRV----------AVKSGQGVGKTGIEAVAVLWFLSCFRYAR 96

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           ++  A +  QL + LW+E++KW    P  +         ++  G+             K 
Sbjct: 97  VVATAPTRQQLHDVLWSEIAKWQERSPLLKAILRWTKTYVYVKGY------------EKR 144

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +    RT +  +P+   G H  + M    DEASG  D I +++LG  +    N   +M  
Sbjct: 145 WFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAVLGTLS--GGNNKLLMCG 199

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  R  G FYD F      +  + + +      D    + +I +YG DS++ R+ + G F
Sbjct: 200 NPTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLF 259

Query: 289 PQQEVNNFIPHNYIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVV 334
           P+Q+ + FI    I++  SR+         A +I+G D+A  G D+TV+
Sbjct: 260 PKQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVI 308


>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
 gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 452

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 121/260 (46%), Gaps = 28/260 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           + ++ +G+G+GKT L A   LW +S  P   +IC A +  QL + LWAE++KW S  P  
Sbjct: 22  RVSVRSGQGVGKTGLEAATALWFLSCFPYPKVICTAPTRQQLHDVLWAEINKWQSKSP-- 79

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                + L    +  Y +  E+        +  T RT +  +P+   G H  + M    D
Sbjct: 80  --VLKRILKWTKTKIYMKNYEE-------RWFATARTAT--KPENMQGLHEDY-MLFIVD 127

Query: 199 EASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           EASG  D I ++ILG  + E N     +M  N  + +G FYD  N    D+K     TR 
Sbjct: 128 EASGVADPIMEAILGTLSGEFNK---ILMCGNPTKTSGVFYDSHNKDRADYK-----TRK 179

Query: 258 VEGIDSGFHEG-----IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           V  +DS          +  +YG  SDV R+ + G+FP+   + FI     E A     ++
Sbjct: 180 VSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFPRGGSDTFISLEVAEFAAKEVKLE 239

Query: 313 DLYAPLIMGCDIAGEGGDKT 332
                L +G D+A  G D+T
Sbjct: 240 PTGDMLTIGVDVARFGDDET 259


>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
 gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
          Length = 460

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 52/318 (16%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
           +KG P E        Q E ++AV  H             + A+ A  G+GKT + AW+ L
Sbjct: 27  LKGDPWEK-------QEEILKAVRDHK------------RVAVRACHGVGKTKVAAWVAL 67

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
           W + T     +I  A +  Q++N LW E+                + S  P G   ++L+
Sbjct: 68  WFLYTHHNSKVITTAPTWHQVENLLWREIHA------------AHAASRIPLG--GKVLQ 113

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             + +  + + +   T   ++P+ F G H  H + +  DEASG       +  GF T + 
Sbjct: 114 TQIELGEQWFALGLST---DKPERFQGFHAEHILLIV-DEASGVEQYTFDAAEGFLTSIG 169

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----------FHEG 268
                ++  N  +L+G FY+ F  PL  + +  I       + +G           + E 
Sbjct: 170 AK--LLLIGNPTQLSGEFYNAFRSPL--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVED 225

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
              ++G DS +    +LG+FP+Q  +  IP  +IE A  R  + +   P+ +G D+A  G
Sbjct: 226 KRLKWGEDSPLWYSRVLGEFPEQGNDTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYG 285

Query: 329 GDKTVVVFRRGNIIEHIF 346
            D TV++ RRG+  E ++
Sbjct: 286 TDTTVIMLRRGDKAEIVY 303


>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
          Length = 473

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 133/302 (44%), Gaps = 43/302 (14%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           F  P  WQ E   A+        +NS     K  I +G+G+GKT   A  +LW +S    
Sbjct: 30  FFYPDEWQKEAAFALR-------DNS-----KVTIKSGQGVGKTGFEAATLLWFLSCFEN 77

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPH----RHWFEMQ-SLSLHPSGWYAELLEQSM 162
             ++  A +  QL + LWAEVSKW S  P       W + + S+      WYA       
Sbjct: 78  ARVVATAPTLHQLNDVLWAEVSKWQSKSPLLKEILQWTKTKISMIGSKERWYA------- 130

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                      RT +   P+   G H  + M    DEASG  D I ++ILG  T    N 
Sbjct: 131 ---------VARTATT--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLT--GSNN 176

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
             ++  N  + +G FYD      + +    +++   +  +    + +I +YG +S+V R+
Sbjct: 177 KLLLCGNPTKASGTFYDSHTSDRKLYYCITVNSAESKRTNKDNIDSLIRKYGEESNVVRV 236

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
            + G FP+Q+ + ++P   +E ++  E I   D+     +G D+A  G D TV+     N
Sbjct: 237 RVKGLFPKQDDDVYMPLEMLEASIILEEIPPADI---CTLGVDVARFGDDDTVIARNMNN 293

Query: 341 II 342
            I
Sbjct: 294 KI 295


>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 301

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQ----LEFMEAVDVHCHSNVNNSNPTIFKCA 81
           L+F  ++ R   WG +G PL +   P  WQ    LE  E ++ +  +        +FK A
Sbjct: 29  LAFTKYMYR---WGEEGTPLANCKGPRAWQTEVFLELAEFIEKNKEAKRLGKPLQVFKLA 85

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I++ RGIGKT L AW+  W +STR G +++  ANS+ Q K T +AE+ +W S+  + H+F
Sbjct: 86  IASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQCKTTSFAEIRRWHSLAKNAHFF 145

Query: 142 EMQSLSLHPSG----WYAELLEQSM 162
           E        +G    W AE + +++
Sbjct: 146 EANIAEALLAGGCSPWQAEPVAKTL 170


>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
 gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 30/295 (10%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           +C +  NN   T+         G GKT ++A  + W +     + +   A SE+ +K+ +
Sbjct: 40  YCEAFKNNQTITV-----KGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGI 94

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDSKHYTITC----RTYSEE 179
           W E               +Q L  + +  + EL E S   I  K    TC    R  S++
Sbjct: 95  WNE---------------LQVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSKD 139

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
                 G H+ + + V  DEASG  D+I    L       P    ++ SN  + +G+F+ 
Sbjct: 140 NIAAARGFHSKNNI-VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFK 198

Query: 240 IFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVNNF 296
            +  P   +DW +     R       G  E     YG  +    + ++ G+FP  +V+  
Sbjct: 199 TWRDPELSKDWIKVHGSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGL 258

Query: 297 IPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           I   +++EA++ ++AI +  AP+I G D AG G DK+V+  R  N++    +W+ 
Sbjct: 259 ISREFLDEAVTNKDAIPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAG 313


>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
          Length = 248

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 16/208 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           ++ +G+G+GKT L A + LW +   P   ++C A +  QL + LWAE+SKW S  P    
Sbjct: 57  SVRSGQGVGKTALEAAISLWFLCCFPFPRVVCTAPTRQQLNDVLWAEISKWQSQSP---- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              + L    +  Y +  E+        +  T RT +  +P+   G H  + M    DEA
Sbjct: 113 ILKRILKWTKTKIYMKNYEE-------RWFATARTAT--KPENMQGFHEDY-MLFIVDEA 162

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
           SG  D I  +I G  +  + N+ + M  N  + +G+F+D  N     ++ +++       
Sbjct: 163 SGVDDRIMAAIFGTLSG-DYNKLF-MCGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPR 220

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQF 288
                 E + ++YG  SDV R+ +LG+F
Sbjct: 221 TSKENIEMLKAKYGEGSDVWRVRVLGEF 248


>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
 gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
          Length = 505

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 122/300 (40%), Gaps = 39/300 (13%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P   K  + AG G+GKTT  A  + W +         C A + +QL+  LW+E+++    
Sbjct: 34  PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKTPCTAPTASQLEQILWSELARLRRR 93

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGI------DSKHYTITCRTYSEERPDTFVGPH 188
                    Q   L P+    E L    G         + + +  RT   ++PD   G H
Sbjct: 94  ----ADARAQGTGL-PAALRLEALFAVSGRAIADRGTPREWFVVARTARRDQPDALQGFH 148

Query: 189 ----------------NTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                            + G A+    +EASG PD + +   G  +  +P    +M  N 
Sbjct: 149 ASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVAEGALS--SPGARLLMVGNP 206

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
            R  G+F          +   ++       +D G+  G++ +YG +S+V R+   G FP+
Sbjct: 207 TRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVRKYGAESNVVRVRADGAFPR 266

Query: 291 QEVNNFIPHNYIEEAM-----SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           Q+ +  I     E A+     +R A +D      +G D+A  G D+TV + R G ++  I
Sbjct: 267 QDDDVLIALETAEAALARPLPARMATEDERR---LGVDVARFGDDRTVFLLRIGPVVGAI 323


>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
 gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
          Length = 486

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 140/351 (39%), Gaps = 80/351 (22%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P + Q++ + AV           NP   + A+ +  G GK+ +   ++LW + +    
Sbjct: 28  TRPWKKQIDIISAV---------RDNP---RTAVRSCHGAGKSFIAGQVILWFLYSFYPS 75

Query: 109 SIICIANSETQLKNTLWAEVSKWL---------SMLPHRHWFEMQSLSLHPSGWYAELLE 159
            ++  A +  Q++  +W EV             ++LP R   E+Q +      WYA  L 
Sbjct: 76  IVLSTAPTWRQVEKLIWKEVRASYRRSKVPLGGNLLPKRP--EIQIIQ---DEWYAVGL- 129

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
                            S   PD F G H  + + V  DEA+G P+ I ++I G  T  +
Sbjct: 130 -----------------STNEPDRFQGFHEENILVVV-DEAAGVPEEIFEAIEGVLTSEH 171

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS-GFHEGII-------- 270
                ++  N   + G FY+ F  P   W+   I   T     + G  E  I        
Sbjct: 172 AR--LLLLGNPTSVGGTFYNAFRTP--GWENISISAFTTPNFTAFGITEDDIINKTWESK 227

Query: 271 --------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                                R+G +S   +  +LGQFP +  +  IP  +IE AM+R  
Sbjct: 228 ITNSLPNPKLITPAWVADKYRRWGPNSPAYQARVLGQFPSEGEDTLIPLAWIEAAMARWE 287

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                 P+ +G D+A  G DKTV+  RRG  +  +  ++ +   ET   GC
Sbjct: 288 DTPEGEPIEIGVDVARFGSDKTVIAARRGQKVLPLNVYAKQDTMET--VGC 336


>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
 gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
          Length = 499

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 128/310 (41%), Gaps = 52/310 (16%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--------K 130
           + ++ AG   GK++L   +  + + TRP   +I  A +  QLK   WAEV+        K
Sbjct: 47  RLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVTAPTYRQLKTIYWAEVNKIYNRSKLK 106

Query: 131 WLSMLP-------------HRHWFEMQSLSLHPSGWYA------ELLEQSM---GI---- 164
            L++                R WF +   +  P G         E++EQ M   GI    
Sbjct: 107 QLNLFEINDKIMRINDKDLKREWFALPVTASTPEGMQGQHGDKTEVIEQIMKHLGIEEIG 166

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRF 223
           D +   I  +    E+    +   +   + V  DE+SG  + I + + G  T+ +    F
Sbjct: 167 DDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDESSGVKNEIFEVLEG--TDYDKLVLF 224

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-----GIISRYGLDSD 278
             MT NT    G+FY+    P    K Y++   T+   +S F +      +   YG DS+
Sbjct: 225 GNMTKNT----GYFYESVYNP--KSKFYKV---TMSSYNSPFMKKEQIHDLEETYGPDSN 275

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFR 337
           V R+ + G+ P    N+    N I+ A  R      Y  + +G D+  G GGD + +  +
Sbjct: 276 VVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIKLGVDVGKGSGGDSSTIYEK 335

Query: 338 RGNIIEHIFD 347
           + N +    D
Sbjct: 336 KDNRVRKKLD 345


>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
 gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
          Length = 189

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 25/163 (15%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--SMLP 136
           + ++ +G+G+GKT L A +++W +  RP   ++C A ++ QL + LW EVSKWL  SM+ 
Sbjct: 47  RTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLENSMVK 106

Query: 137 H-RHWFEMQSLSL-HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +   W + +   + H   W+A                T RT +  +P+   G H  + M 
Sbjct: 107 NLLKWTKTKVYMIGHEQRWFA----------------TARTAN--KPENMQGFHEDY-ML 147

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              DEASG  D I ++ILG  +    N+  +M  N  R +G F
Sbjct: 148 FIVDEASGVSDPIMEAILGTLSGAE-NKL-LMCGNPTRTSGVF 188


>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
 gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
          Length = 503

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 32/316 (10%)

Query: 28  FKNFVMRF-FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           +++ V+R+ + W +    +E F     WQ E +          +N+   T  +  +++G 
Sbjct: 16  WRDMVIRYRYNWALA--VVELFGMIPTWQQEEI----------MNSVQETGSQTTVTSGH 63

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK++L A M+L  +   P   +I +AN   Q+K  ++  V  + +    RH +     
Sbjct: 64  GTGKSSLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYF 123

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           +L  + +Y    +   GI    + + C+ Y     +   G H  H + +  DEASG  D 
Sbjct: 124 TLTDTMFYE---KSRKGI----WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDK 175

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRYQIDTRTVE 259
               + G  TE + NR  +M+  TR  +G+FYD         + P   W    +++    
Sbjct: 176 AIAIMRGALTEED-NRMLMMSQPTRP-SGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAP 233

Query: 260 GIDSGF-HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
            +   F  E ++   G DS    +++LG+FP+      +  +  + A  R+   +     
Sbjct: 234 HVTLKFIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGW 293

Query: 319 IMGCDIAGEGGDKTVV 334
           +   D+ G G DK+++
Sbjct: 294 VATADV-GNGRDKSIL 308


>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
 gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
          Length = 492

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 31/309 (10%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P  W  + ++         + ++ P   + A+    G+GK+   A ++ W  +TR  M 
Sbjct: 22  SPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLMG 81

Query: 110 ----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               II  A++   L+  LW E+ KW   +         +L   P     ELL+  + + 
Sbjct: 82  KDWKIITTASAWRHLEVYLWPEIHKWAGRI------NFVALGRAPYNPRTELLDLRLKL- 134

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPN 221
             H   T    +  +P+   G H    + +  DEA   P     SI G F+    ++  N
Sbjct: 135 -THGAATA--VASNQPERIEGAHAEELLYLL-DEAKIVPPATWDSIEGAFSNAGVDVADN 190

Query: 222 RFWIMTSNTRRLNGWFYDIFNIP--LEDW--KRYQIDTRTVEG-IDSGFHEGIISRYGLD 276
            +    S     +G FYDI       EDW  +   ++     G I   + +   S++G D
Sbjct: 191 AYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGSD 250

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAM------SREAIDDLYAPLIMGCDIAGEGGD 330
           S V    +LG+F   + ++ IP  ++E A+       R+       PL  G D+ G GGD
Sbjct: 251 SAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDV-GRGGD 309

Query: 331 KTVVVFRRG 339
           +TV+  R G
Sbjct: 310 ETVLAARDG 318


>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
          Length = 411

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y        GI    + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           EASG  D     + G  TE + NR  +M S   R +G+FYD         + P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F +  +  Y G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
           + +     +   D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308


>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
          Length = 453

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 7   RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 66

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y        GI    + + C+ Y     +   G H  H + +  D
Sbjct: 67  HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 118

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           EASG  D     + G  TE + NR  +M S   R +G+FYD         + P   W   
Sbjct: 119 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 176

Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F +  +  Y G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 177 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 236

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
           + +     +   D+ G G DK+V+
Sbjct: 237 LLEKNWGWVATADV-GNGRDKSVL 259


>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
          Length = 502

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y        GI    + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           EASG  D     + G  TE + NR  +M S   R +G+FYD         + P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F +  +  Y G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
           + +     +   D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308


>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
          Length = 502

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y        GI    + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           EASG  D     + G  TE + NR  +M S   R +G+FYD         + P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSRAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGF-HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F  E ++   G DS    +++LGQFP++     +  +  + +  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRSARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
           + +     +   D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308


>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 293

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           +  N  R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +L
Sbjct: 3   LCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVL 62

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           G+FP+ E + FIP   +E+A S + ++     L +G D+A  G D+TV+  R GN +  +
Sbjct: 63  GEFPKAEADAFIPLEIVEQAASCK-VEPTGETLDLGVDVARFGDDETVIAPRIGNKVFKL 121

Query: 346 FDWSAKLIQET 356
            +   +   ET
Sbjct: 122 LNHYKQDTMET 132


>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
 gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
          Length = 507

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 128/313 (40%), Gaps = 35/313 (11%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAI--SAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           WQLE    VD        NS+   F CAI  S G G GKT L+  + +W     PG    
Sbjct: 51  WQLEI---VDYIAKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQF 107

Query: 112 CIANSETQLKNT----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            + NSE Q K T    L   +SK LS +       ++S + + S   A+  E     D  
Sbjct: 108 ILTNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMW 161

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIM 226
             T   ++ +E       G H  H M  F+ DE++   D + +++   +T+         
Sbjct: 162 DVTYLLQSSTEA---ALSGLH--HPMMTFSFDESTYFNDHVWQALENMWTQ--GQVLCFC 214

Query: 227 TSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID-------SGFHEGIISRYGLDSD 278
           T N +   N +F  +FN  L       + TR V  ++             I   YG    
Sbjct: 215 TGNPSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHP 273

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCD--IAGEGGDKTVVV 335
                +LGQFP++   N      I EAM RE  ++ ++ P+IMG D  I+   G  + + 
Sbjct: 274 RYIASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAIC 333

Query: 336 FRRGNIIEHIFDW 348
            R G  +  + ++
Sbjct: 334 VREGTAVRVLREY 346


>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
 gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
          Length = 494

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 27/268 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
            ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  + S W + +   
Sbjct: 52  TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
            W     +    S  + E+  + +      +TI   +CR+ +EE      G H  H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRSGNEE---ALAGEHADHLLYI 160

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
             DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
 gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
          Length = 494

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 27/268 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
            ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  + S W + +   
Sbjct: 52  TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
            W     +    S  + E+  + +      +TI   +CR  +EE      G H  H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRPGNEE---ALAGEHADHLLYI 160

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
             DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
 gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
 gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
 gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
 gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
 gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
 gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
 gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
          Length = 494

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 27/268 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
            ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  + S W + +   
Sbjct: 52  TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
            W     +    S  + E+  + +      +TI   +CR  +EE      G H  H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRPGNEE---ALAGEHADHLLYI 160

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
             DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
 gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
          Length = 572

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 11/163 (6%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           +N   P   + ++++G G GK+ L A + L  I T P    +  ANS  Q+ N +++ + 
Sbjct: 53  INALTPVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFSYIK 112

Query: 130 K-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           + W+ +   + W E Q   +    +YA+  +    I  K    TC   +EE      G H
Sbjct: 113 RCWVKICQRQPWLE-QYFVITAKSFYAKGYKGVWQIFGK----TCSKGNEE---GLAGQH 164

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
               M V  DEASG  D   + + G  TE N N+  +++  TR
Sbjct: 165 RRDYMVVV-DEASGVSDRAFEVLRGALTEDN-NKMLLISQFTR 205


>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
          Length = 494

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
           K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +   W +    
Sbjct: 51  KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             W       L  + +Y E+  + +      +T+  + +     +   G H  H + +  
Sbjct: 111 FPWL-ADYFVLTETAFY-EITGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
           DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +  
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219

Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
             +++     +   F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279

Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
                    +   D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
          Length = 494

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
           K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +   W +    
Sbjct: 51  KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             W       L  + +Y E+  + +      +T+  + +     +   G H  H + +  
Sbjct: 111 FPWL-ADYFVLTETAFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
           DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +  
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219

Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
             +++     +   F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279

Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
                    +   D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
 gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
 gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
 gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
 gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
 gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
 gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
          Length = 494

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
           K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +   W +    
Sbjct: 51  KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             W       L  + +Y E+  + +      +T+  + +     +   G H  H + +  
Sbjct: 111 FPWL-ADYFVLTETAFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
           DEASG  D     I G  T  + NR  +++  TR  +G+FYD  +        P   +  
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219

Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
             +++     +   F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279

Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
                    +   D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
 gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
          Length = 431

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 35/275 (12%)

Query: 80  CAISAGR--GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           C I  GR  G  K T NA +  WL+    G  I+ +      LK          L  LP 
Sbjct: 26  CTIEKGRRFGFTKGTANACIE-WLLE---GQKILWVDTIAANLKRYFERYFLPELRQLPK 81

Query: 138 RHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
             W +  Q   L   G Y +                    S ERP+   G    +   + 
Sbjct: 82  ELWNWNAQDKQLKICGGYLDF------------------RSAERPENIEG--FGYDTVIL 121

Query: 197 NDEA--SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRY 251
           N+       P + + +I     + NPN    +    +  N  F+D+    + +   W+ +
Sbjct: 122 NEAGIILKDPYLWDNAISPMLLD-NPNSRAFIGGVPKGKNK-FFDLAQRGMRNEKGWRNF 179

Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  +     +     + +++  G  DSDVAR EI G+F     N+      IE A  ++ 
Sbjct: 180 QFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDTTSNSVFSLAAIEAAFRKQR 239

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
             D  AP+I   D+A EG D++V+  R+G+ +E +
Sbjct: 240 YFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPL 274


>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 494

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 19/265 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +    S    R
Sbjct: 51  KTSVSSGHGTGKSDMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKINWSTATSR 110

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             +  +   L  + +Y E+  + +      +T+  + +     +   G H  H + +  D
Sbjct: 111 FPWLAEYFVLTDTSFY-EITSKGV------WTVVPKGFRLGNEEALAGEHADHLLYII-D 162

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRY 251
           EASG  D     + G  T  + NR  +++  TR  +G+FYD  +        P   +   
Sbjct: 163 EASGVSDKAFGIMTGALTGKD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPNGIYTAI 220

Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F +  ++ Y G DS +  I++ G FP+ +    +  + +E A  R+ 
Sbjct: 221 TLNSEESPLVTPEFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKV 280

Query: 311 IDDLYAPLIMGCDIA-GEGGDKTVV 334
                   I   D+A G G DK+V+
Sbjct: 281 KIAKGWGWIACVDVAGGTGRDKSVI 305


>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
 gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
          Length = 553

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 33/290 (11%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++ G  +GK+ L A + LW + T PG  ++  A S+  L   L+ E+ K L+    R   
Sbjct: 68  VATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVLFRELQKALAA-SRRRGL 126

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +  + +         L    G         C   +    +   G H+   M V  DEAS
Sbjct: 127 GLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERLAGRHHADLMVVV-DEAS 185

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT------ 255
           G    +        T LNP + ++   N       F+ +    L +     I        
Sbjct: 186 G----VQPEAWEALTSLNPRKLFV-CGNPLTPGTVFHKLHQRGLTEASDPSIPDHARGVA 240

Query: 256 --------------RTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                         R+  G+ D GF      ++G  S +    + G FP   V+  I   
Sbjct: 241 LTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSHVEGVFPTVAVHALIEPG 300

Query: 301 YIEEAMSREAIDDLYAP---LIMGCDI-AGEGGDKTVVVFR-RGNIIEHI 345
           ++++A S E       P    ++GCD+ AG G D+T +V R  G I E I
Sbjct: 301 WLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDEGGIRELI 350


>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 272

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           W   QID+RTVEG +          YG +SD  ++ + G FP      FI    +  A  
Sbjct: 14  WVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFISETDVSAAYG 73

Query: 308 REAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRG 339
           R    +   YAP I+  D A EG D+ V+  R+G
Sbjct: 74  RALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQG 107


>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
 gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
          Length = 520

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           + ++++G G GK+     + LW +   P   ++  A    QL+  +W E++  L  L + 
Sbjct: 57  RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116

Query: 139 HWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPHNTHGM 193
                        GW A+   +L + + I     T  +  +T  + +P    G H  H M
Sbjct: 117 KAL----------GWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            V+ DEA G  D + +  +G  T  N NR  ++TS   +  G+FYD
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYD 209


>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
          Length = 520

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           + ++++G G GK+     + LW +   P   ++  A    QL+  +W E++  L  L + 
Sbjct: 57  RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116

Query: 139 HWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPHNTHGM 193
                        GW A+   +L + + I     T  +  +T  + +P    G H  H M
Sbjct: 117 KAL----------GWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            V+ DEA G  D + +  +G  T  N NR  ++TS   +  G+FYD
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYD 209


>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
 gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 549

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 47/286 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A+++G G GKT L A ++LW I+  P      +A    Q +  +W EV+        RH
Sbjct: 70  VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVA--------RH 121

Query: 140 WFEMQSLSLHPSGWYAEL---LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           W   Q  +  P      L   +E   G     + IT    + E   + V   +   + + 
Sbjct: 122 WPRFQ--ACFPEAELTTLRIRMEPWRGDAWGAWGITAAPKAGEESSSAVQGLHAKRLLIL 179

Query: 197 NDEASGTPDIINKSILGFFT--------------ELNP-NRFWIMTSNTRRLNGWFYDIF 241
            DE  G P  +  +++   T              + +P  +F    + T+R+        
Sbjct: 180 VDETPGVPQPVMTALVNTATGEENVIAAFGNPDYQADPLGQF----AETKRVTA-----I 230

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISR---YGLDSDVARIEILGQFPQQEVNNFIP 298
            I   D     +    + G  +     I +R   YG++S V +  + G  P+Q  +  I 
Sbjct: 231 RISALDHPNVVLGVERIPGAATRLS--IATREDKYGVESGVYQSRVRGIAPEQSASALIH 288

Query: 299 HNYIEEAMSR-EAIDD---LYAPLIMGCDIA-GEGGDKTVVVFRRG 339
             +   A  R E++        P  +G D+A  E GDK  V   +G
Sbjct: 289 LAWCVAAADRAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQG 334


>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
 gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
          Length = 556

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 51/268 (19%)

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +   A ++ Q+KN +  E+S+  +    R    +  L+ +            +  ++  
Sbjct: 124 KVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAY-----------DIRTNNDE 172

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG-------FFTELNPN 221
           + +T     E   + + G H  H M V   EA+G  D    +I G            NPN
Sbjct: 173 WFLTGFKADEHNHEAWSGFHAVHTMFVVT-EATGIGDDTFAAIEGNLQGDSRILLVFNPN 231

Query: 222 RFWIMTSNTRRLNGWF------------------------YDIFNIPLEDWKRYQIDTRT 257
           +     + +++ + W                         YD     LE+W         
Sbjct: 232 KTVGYAAKSQKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKLENWCEKISPDEI 291

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR----EAIDD 313
           +  +D    EG   R     D+ R ++LG FP+ + +  IP  ++EEA  R    +  + 
Sbjct: 292 ISEMDDFEFEGQWYR---PEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHERWKQAKGREP 348

Query: 314 LYAPL-IMGCDIAGEGGDKTVVVFRRGN 340
           L A L I+G D+AG G D T  V RR N
Sbjct: 349 LRADLNILGVDVAGMGRDATCYVLRRDN 376


>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 430

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     + +    E I    G DS+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
                   IE AMS+ +  I+ +    I G D+A  G DK+V+  R+G I++ I  +S  
Sbjct: 224 AELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQL 283

Query: 351 -------KLIQETNQ-EGCPVG 364
                  +++ E NQ E  P G
Sbjct: 284 GTMELANRILAEYNQSEDKPKG 305


>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
 gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
          Length = 433

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 246 EDWKRYQIDT-----RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           +DW  +QI +        E ID    E I    G+DSDV + EI G+F     N   P +
Sbjct: 174 KDWVNFQISSFENPLLRKEEID----ELIAELGGVDSDVVKQEIYGEFLDTTTNALFPLS 229

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
            IE A  +    +  A  I G D+A +G D++V+  R G  ++++
Sbjct: 230 QIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVKNL 274


>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGI 164
           +  AN++TQL+     EV KW  +    HWF+ QS S+      H   W A+ +      
Sbjct: 1   MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARDKEHAKTWRADFV------ 54

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                      +SE   + F G HN    + +  DEAS   D + +   G  T+      
Sbjct: 55  ----------PWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEII 104

Query: 224 WIMTSNTRR 232
           WI   N  R
Sbjct: 105 WIAFGNPTR 113


>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 430

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     + +    E I    G  SDV R EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
                 + IE AMS+ +     +    I G D+A  G DK+V+  R+G +I+ +  +S
Sbjct: 224 AELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKKYS 281


>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
          Length = 459

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-------EAIDDLYAPLIMGCDIAGEGG 329
           +D+ RI++LG FP+   +  IP  ++E A  R       + +   YA +  G D+AG G 
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARV--GIDVAGMGR 278

Query: 330 DKTVVVFRRGNIIEHI 345
           D +  V R GN +  I
Sbjct: 279 DSSCFVLRYGNYVPEI 294


>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
 gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
          Length = 430

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     +     + +I   G + S+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
                 + IE AMS+ +  I+ +    I G D+A  G DK+ +  R+G +I  I  +S  
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283

Query: 351 -------KLIQETNQ-EGCPVG 364
                  K++ E NQ E  P G
Sbjct: 284 GTIELANKILAEYNQSEDKPKG 305


>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
           305]
          Length = 430

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     +     + +I   G + S+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
                 + IE AMS+ +  I+ +    I G D+A  G DK+ +  R+G +I  I  +S  
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283

Query: 351 -------KLIQETNQ-EGCPVG 364
                  K++ E NQ E  P G
Sbjct: 284 GTIELANKILAEYNQSEDKPKG 305


>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 500

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTV 333
           +D+ RI++ G FP+   +  IP+ +IE A  R   +  Y P     +G D+AG G D +V
Sbjct: 264 NDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRWQENHPYRPRKSCKLGVDVAGMGRDNSV 323

Query: 334 VVFRRGNIIEHI 345
              R GN +   
Sbjct: 324 FCPRYGNYVSQF 335


>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 28/144 (19%)

Query: 221 NRFWIMTSNTRRLNGWFYDIFN------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
           N+F+ M  +  +  GW+  I+       +P E+ K  Q     +E               
Sbjct: 168 NQFYEMYQHAEKSAGWYSCIYRTDETGVLPAEELKDMQAQMTEME--------------- 212

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKT 332
                 R E+L  F     +  IP + +  A +R   DD  L  P+I+G D+A  G D+T
Sbjct: 213 -----IRQELLCDFTASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRT 267

Query: 333 VVVFRRGNIIEHIFDWSAKLIQET 356
           V+  R+G  ++ +  ++     ET
Sbjct: 268 VLCVRQGLWLKEVRTFTGLSTMET 291


>gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
           10507]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 137/319 (42%), Gaps = 36/319 (11%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
           C   V+ S         SAG G  K+   A   L  +    G ++ICI  S+   +++ +
Sbjct: 10  CFREVDRSQKRYIVMKGSAGSG--KSVDTAQNYLLRLMQDKGRNLICIRKSDITNRDSTY 67

Query: 126 AEVS----KWLSMLPHRHWFEMQ---SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           AE++    +       R+W   Q   SL+  P+G   +++ + +  + +   +   T+  
Sbjct: 68  AELTGAAYRIFGDQVDRYWNIKQSPLSLTFRPNG--NQIIFRGVNDEKQREKLKSITFQR 125

Query: 179 ER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRLNG 235
            +  D ++        A F        +II+  + G   EL P++F+   MT N    N 
Sbjct: 126 GKLTDVWIEEATEITQADF--------EIIDDRLRG---ELPPDQFYQIRMTFNPVNKNH 174

Query: 236 WFYDI-FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           W   + F+ P  +   +         ID+ +H  +  R  +D +  +I  LG +   EV 
Sbjct: 175 WIKKVFFDTPDSNVLTHHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNWG--EVG 232

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN---IIEHIFDW--- 348
             I HN+  E +S + +DD Y  + +G D      +  +++  + +   I++ I+ +   
Sbjct: 233 GLILHNWAVENIS-QNLDD-YDDIAIGQDFGFNHANAILLLGMKDDNIYILQEIYVFEKE 290

Query: 349 SAKLIQETNQEGCPVGSSI 367
           +A++I    ++G P+  ++
Sbjct: 291 TAEIIPLAIKDGIPIKRTM 309


>gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C231]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           WFYD++    ED    W+R+   T  +EG +   HE   +R  LD+   R E    F  +
Sbjct: 96  WFYDLWCYVPEDETGEWQRWSYTT--IEGGNVSKHEVEAARAQLDNRTFRQEFEASF--E 151

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            +   +  ++ +E +S+EA D    PL++G D
Sbjct: 152 NLTGLVAISFSDENISQEAKDISIQPLLLGVD 183


>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 51/280 (18%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH---R 138
           + AGRG GKT   A  + WL  +     I  +  +    +  +    S  LS+ P+    
Sbjct: 80  LMAGRGFGKTRAGAEWIRWLAQSGRARRIALVGETFDDARQVMVEGASGILSVCPNWARP 139

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            W   Q   + PSG                     R YS + P+   GP   +G A   D
Sbjct: 140 AWRAGQRTLIWPSG------------------TIARCYSADDPEQLRGPEFDYGWA---D 178

Query: 199 EASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           E +    P   +  +L      +P     + + T R   W  D+     ED    Q  +R
Sbjct: 179 EIAKWRYPSAWDNLMLALRIGKSPQ---CIATTTPRPVRWLADLAAA--EDTVLVQGASR 233

Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +   F   +  R+G DS +AR         QE+   +  N  +    R  I  L+
Sbjct: 234 ENAANLSPAFMAAMHRRFG-DSYLAR---------QELEGIMMSNLPDALWCRNDILRLH 283

Query: 316 APL---------IMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
            P+         ++G D A  GGD+T ++    +   HI+
Sbjct: 284 RPMPKRHRFIRIVIGVDPAMGGGDETGIITAGKDQDGHIW 323


>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
 gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
          Length = 509

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 29/268 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSML 135
           + ++S+G G GKT+  A + LW +      + I  A   + + + +W   A++S  +S  
Sbjct: 54  RTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKISTVSDGVWKEFADLSTKISNG 113

Query: 136 PHR---HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           P      +F ++S  ++  G+              ++ +  ++     P+   G H    
Sbjct: 114 PQSWIWEYFVIESERVYVRGY------------KLNWFVIAKSAPRGSPENLAGAHRDW- 160

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----W 248
           +    DEASG PD     I G  T+   NR  + +  TR  +G+FY+  +         W
Sbjct: 161 LLWLADEASGIPDDNFGVITGSLTD-ERNRMCLASQPTRS-SGFFYETHHALSRAEGGPW 218

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                ++     + + F      +Y    +  +I++ G+FP+      +    IE  + R
Sbjct: 219 NNLVFNSEFSPIVSAKFIAEKKLQY--TEEEYQIKVQGRFPENSSKYLVGPQAIEACVGR 276

Query: 309 EAID-DLYAPLIMGCDIAGEG-GDKTVV 334
             I  D +   ++  D+ G G  D+TV+
Sbjct: 277 TVIKPDEHWGWLLPVDVGGGGWRDETVM 304


>gi|226479018|emb|CAX73004.1| Cell division control protein 42 homolog precursor [Schistosoma
          japonicum]
          Length = 98

 Score = 38.9 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
          KP++    P    L+ +   + H H N+NN NPTI KC +     +GKT+L
Sbjct: 2  KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51


>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
 gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
          Length = 513

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP---LIMGCDIAGEGGDK 331
           +D+ R+++LG FP+   +  IP+ +IE A    +E     + P     +G D+AG G D 
Sbjct: 275 NDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQELQASGFIPAKSCKLGVDVAGMGRDN 334

Query: 332 TVVVFRRGNII 342
           +V+  R GN +
Sbjct: 335 SVLCPRYGNYV 345


>gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C1220]
 gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C491]
 gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C846]
          Length = 354

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           WFYD++    +D    W+R+   T  ++G +   HE   +R  LD+   R E    F  +
Sbjct: 96  WFYDLWCYVPDDETNEWQRWSYTT--IDGGNVSKHEVEAARAQLDTRTFRQEFEASF--E 151

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            +   +  ++ +E +S+EA D    PL++G D
Sbjct: 152 NLTGLVAISFSDENISQEAKDISIQPLLLGVD 183


>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
 gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
          Length = 479

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           L G F+D F+   + + ++Q        I   F E + ++YG DSD+ R  ILGQ P+  
Sbjct: 183 LFGRFHDAFS--QDRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKGN 240

Query: 293 VNNF-IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
              F +P    E   S   +       +  CD A E  D+ V+  R GN +  +  W
Sbjct: 241 ETGFVVPFVDYERCESNPPVWQEGTKQVF-CDFA-ETSDECVIAKRDGNRLSIVDAW 295


>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
 gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
          Length = 543

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A  G GK+ + + ++++ +    G++I   A SE Q+K  LWAE+ K           
Sbjct: 64  VKAAHGTGKSFIASLLVIYFLFCVGGVAITT-APSEDQVKWILWAELRK----------- 111

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +  L     G   ++++         + IT R YSE   ++F G H    + +  DEA 
Sbjct: 112 -IHGLHKTKLGGRCDIMQLLFSETVYAFGITSRDYSE---NSFQGQHRQKQL-LIEDEAD 166

Query: 202 G-TPDIINKSI 211
           G TP I N  I
Sbjct: 167 GITPQIDNGFI 177


>gi|76156436|gb|AAX27647.2| SJCHGC05167 protein [Schistosoma japonicum]
          Length = 206

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
          KP++    P    L+ +   + H H N+NN NPTI KC +     +GKT+L
Sbjct: 2  KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51


>gi|29841054|gb|AAP06067.1| similar to NM_021205 CDC42-like GTPase; novel Ras family protein;
          Wrch-1; Ryu GTPase in Homo sapiens [Schistosoma
          japonicum]
          Length = 187

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
          KP++    P    L+ +   + H H N+NN NPTI KC +     +GKT+L
Sbjct: 2  KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51


>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
           PD1222]
 gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
           denitrificans PD1222]
          Length = 441

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
           G +  +    FI    + EAM+R+    +   L++G D+A  G D++V+  RRG 
Sbjct: 214 GDYEAESDMQFIGGGLVREAMARQPFSQIGDELVLGVDVARFGDDRSVIWARRGR 268


>gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism
           MedDCM-OCT-S12-C92]
          Length = 354

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           WFYD++    +D    W+R+   T  ++G +   HE   +R  LD+   R E    F  +
Sbjct: 96  WFYDLWCYVPDDETNEWQRWSYTT--IDGGNVSKHEVEAARAQLDTRTFRQEFEASF--E 151

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            +   +  ++ ++ +S EA D    PL++G D
Sbjct: 152 NLTGLVAISFSDDNISTEAKDISIQPLLLGVD 183


Searching..................................................done


Results from round 2




>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score =  521 bits (1341), Expect = e-146,   Method: Composition-based stats.
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME
Sbjct: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL
Sbjct: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360

Query: 361 CPVGSSI 367
           CPVGSSI
Sbjct: 361 CPVGSSI 367


>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
 gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 511

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/359 (70%), Positives = 299/359 (83%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE   D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS   ++ TN +
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359


>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
 gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 516

 Score =  507 bits (1306), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/359 (71%), Positives = 302/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP  
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359


>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 262/359 (72%), Positives = 303/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG  IEHIFDWS   +  ++++
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRK 359


>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 264/359 (73%), Positives = 303/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG  IEHIFDWS   +  ++++
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRK 359


>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
 gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
          Length = 493

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 157/355 (44%), Gaps = 20/355 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M     LS   + +  FPWG  G  LE+ S P +WQ E +  + 
Sbjct: 1   MIETMSPEEQLINDIGMFTHDPLS---YALYAFPWGEAGTELENASGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E++KW  +   + WF     +++ +              +  +      +SE   + 
Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDP----------NHANAWRADAVPWSENNTEA 165

Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ N    WI   N  R  G F + F 
Sbjct: 166 FAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      FIP    
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285

Query: 303 EEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           + AM R        +AP+I+G D A  G D  V+  R+G   + +  W+     +
Sbjct: 286 DAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCL--WTGSKTID 338


>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
 gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
          Length = 493

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 20/355 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M     LS   + +  FPWG  G  LE+ + P +WQ E +  + 
Sbjct: 1   MIDTMSPEEQLINDIGMFTHDPLS---YALYAFPWGEAGTELENANGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E++KW  +   + WF     +++ +              +  +      +SE   + 
Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDP----------NHANAWRADAVPWSENNTEA 165

Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ N    WI   N  R  G F + F 
Sbjct: 166 FAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      FIP    
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285

Query: 303 EEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           + AM R        +AP+I+G D A  G D  V+  R+G   + +  W+     +
Sbjct: 286 DAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCL--WTGSKTID 338


>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 493

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 18/346 (5%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
                 EQ + ++       L    + +  FPWG  G  L H + P +WQ +    +  H
Sbjct: 4   EAMSPEEQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDH 60

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
             +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W
Sbjct: 61  LQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            E+ KW ++   + WF   + +++ +    +          K +      +SE   + F 
Sbjct: 119 PEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168

Query: 186 GPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F   
Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
              WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP    N FIP    + 
Sbjct: 229 KHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQP 288

Query: 305 AMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           A+ R        +A +++G D + +G D  V+  R+G   + + +W
Sbjct: 289 AVGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEW 334


>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
 gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
          Length = 495

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 25/356 (7%)

Query: 7   TDQKL--EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           TD  L  E++L E L+  + + SF +    + +  FPWG  G  L H S P +WQ +   
Sbjct: 2   TDAALSPEEQLKEQLI--DDIASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFR 59

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H  +      P +   + ++G GIGK+   + ++ W +ST     ++  AN++ QL
Sbjct: 60  EIGEHLQNPATRHQPLMI--SRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQL 117

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +   W E+ KW ++   + WF   + +++ +    +          K +      +SE  
Sbjct: 118 RTKTWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHN 167

Query: 181 PDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            + F G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F +
Sbjct: 168 TEAFAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRE 227

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
            F      WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP      FIP 
Sbjct: 228 CFRKYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPT 287

Query: 300 NYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
              +EAM R   A    +AP I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 288 GLTDEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 341


>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
          Length = 493

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 153/344 (44%), Gaps = 18/344 (5%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
               EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  
Sbjct: 6   MSPEEQLVEDIAGFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
           +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E
Sbjct: 63  NPATRHQPIML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           + KW ++   + WF   + +++ +    +          K +      +SE   + F G 
Sbjct: 121 IIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGL 170

Query: 188 HNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F     
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP    N FIP    + A+
Sbjct: 231 RWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAV 290

Query: 307 SR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
            R        +A +++G D + +G D  V+  R+G   + + +W
Sbjct: 291 GRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEW 334


>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG  G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIDDIASFTHDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PATRHQPLML--ARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP      FIP    +EAM 
Sbjct: 232 WKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A+   +AP I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
          Length = 491

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 155/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A+++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PATRYQPLML--ALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    YAP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
          Length = 491

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 20/349 (5%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
               EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  
Sbjct: 6   MSPEEQLVEDIASFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
           +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E
Sbjct: 63  NPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           + KW ++   + WF   + +++ +    +          K +      +SE   + F G 
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGL 170

Query: 188 HNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F     
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290

Query: 307 SR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
            R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
          Length = 491

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PATRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 491

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 155/352 (44%), Gaps = 20/352 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           ++     EQ + ++       L    + +  FPWG  G  L H + P +WQ +    +  
Sbjct: 3   VAAMSPEEQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           EAM R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 491

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 491

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
          Length = 491

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
 gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 23/352 (6%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           IST+++L +++      A        + +  FPWG  G  L H + P +WQ +    +  
Sbjct: 6   ISTEEQLVEDI------ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG +SD  ++ + G FP      FIP    +
Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           EAM R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
 gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
          Length = 491

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIDDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
 gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
          Length = 491

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 154/348 (44%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    ++P+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
 gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
          Length = 491

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 20/348 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++       L    + +  FPWG +G  L H + P +WQ +    +  H  +
Sbjct: 7   SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+
Sbjct: 64  PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            KW ++   + WF   + +++ +    +          K +      +SE   + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171

Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F      
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           WK  QID+RTVEG +    +  +  YG  SD  +I + G FP      FIP    +EAM 
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291

Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           R   A    +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337


>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
          Length = 480

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 21/338 (6%)

Query: 23  ECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           E +  F +    + +  FPWG +G  L H + P +WQ +    +  H  +      P + 
Sbjct: 3   EDIAGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML 62

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   +
Sbjct: 63  --ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITK 120

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFN 197
            WF   + +++ +    +          K +      +SE   + F G HN    + V  
Sbjct: 121 DWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHNERKRIIVVF 170

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEAS   D++ +   G  T+ +    W+   N  R  G F + F      WK  QID+RT
Sbjct: 171 DEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRT 230

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLY 315
           VEG +    +  +  YG DSD  +I + G FP      FIP    +EAM R   A    +
Sbjct: 231 VEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAH 290

Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 291 APVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 326


>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
 gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
          Length = 494

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 154/352 (43%), Gaps = 23/352 (6%)

Query: 9   QKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           + L++   E L+  E + SF +    +    FPWG  G  LE ++ P +WQ E +  +  
Sbjct: 3   EALQKSPEEQLI--EDIASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGE 60

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W + T     ++  AN+E QL+   
Sbjct: 61  HLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKT 118

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E++KW  +    +WF     +++ +              +  +      +SE   + F
Sbjct: 119 WPEIAKWQRLSLTNNWFTCTKTAIYSNDP----------NHANAWRADAVPWSENNTEAF 168

Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + +  DEAS   D++ +   G  T+      WI   N  R  G F + F  
Sbjct: 169 AGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRECFRK 228

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               W   QID+RTVEG +    +     YG DSD  ++ + G FP      FIP    +
Sbjct: 229 FKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPTGLTD 288

Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           EAM R     +  +AP+I+G D A  G D  V+  R+G   + +  W+    
Sbjct: 289 EAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCL--WTGFKT 338


>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
 gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
          Length = 490

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 19/348 (5%)

Query: 5   ISTDQKLE-QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +S+   LE Q + ++            + +  FPWG +G  L +   P +WQ +  + + 
Sbjct: 1   MSSAADLEIQLIEDIGAFTHDPF---GYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P +   A  +G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  AHLQNPDTRHQPLMIGRA--SGHGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E++KW  +   + WF   + +++ +              +K +      +SE   + 
Sbjct: 116 TWPEIAKWQRLSITQDWFTCTATAIYSNDP----------SHAKSWRADAIPWSENNTEA 165

Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ N    W+   N  R  G F + F 
Sbjct: 166 FAGLHNERKRIILIFDEASNIADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFR 225

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+R+VEG +    +  +  YG DSD  ++ + G FP      FIP    
Sbjct: 226 KLRHRWKTAQIDSRSVEGTNKEQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLT 285

Query: 303 EEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           + A+ R        +A  ++G D A +GGD  V+  R+G   + + ++
Sbjct: 286 DAAVGRVITPGQVAHAATVIGVDPAHQGGDPAVIYLRQGLHTKKLGEY 333


>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
 gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
          Length = 459

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 18/310 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           ++  P  +  + +          V        K ++ +G+G+GKT L + +++W +  RP
Sbjct: 7   YWDDPVAFAEDMLGFYPDEWQRKVLMDLAQSPKVSVRSGQGVGKTGLESVVVIWFLCCRP 66

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              +IC A ++ QL   LWAE++KWL     ++  +     ++  G              
Sbjct: 67  NPKVICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIG------------SE 114

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + +  T RT +  +P+   G H  + M    DEASG  D I ++ILG  +         +
Sbjct: 115 ERWFATARTAT--KPENMQGFHEDY-MLFVCDEASGIADPIMEAILGTLS--GAENKLFL 169

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N  R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +LG
Sbjct: 170 CGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLG 229

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           +FP+ E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN +  + 
Sbjct: 230 EFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLL 288

Query: 347 DWSAKLIQET 356
           +   +   ET
Sbjct: 289 NHYKQDTMET 298


>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 459

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 18/310 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           ++  P  +  + +          V        K ++ +G+G+GKT L + +++W +  RP
Sbjct: 7   YWDDPVAFAEDMLGFYPDEWQRKVLMDLAQSPKVSVRSGQGVGKTGLESVVVIWFLCCRP 66

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              +IC A ++ QL   LWAE++KWL     ++  +     ++  G              
Sbjct: 67  NPKVICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIG------------SE 114

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + +  T RT +  +P+   G H  + M    DEASG  D I ++ILG  +         +
Sbjct: 115 ERWFATARTAT--KPENMQGFHEDY-MLFVCDEASGIADPIMEAILGTLS--GAENKLFL 169

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N  R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +LG
Sbjct: 170 CGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLG 229

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           +FP+ E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN +  + 
Sbjct: 230 EFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLL 288

Query: 347 DWSAKLIQET 356
           +   +   ET
Sbjct: 289 NHYKQDTMET 298


>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 255

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 194/255 (76%), Positives = 224/255 (87%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS
Sbjct: 1   IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           LHP+ WY+++L  S+GIDSKHY+  CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I
Sbjct: 61  LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           N  ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID  FHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
           GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE   D YAPLIMGCDIA E
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240

Query: 328 GGDKTVVVFRRGNII 342
           GGD TVVV RRG +I
Sbjct: 241 GGDNTVVVLRRGPVI 255


>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 483

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 17/344 (4%)

Query: 14  ELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
           E H+ L+ A   L+     FV   +PWG  G PLE+   P  WQ++ ++ +         
Sbjct: 2   EKHDELIEALGALTHDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLK--KG 59

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
               T  + A+++G GIGK+ L +W++ + IST      +  AN+E QL+   W E+SKW
Sbjct: 60  KDLQTAIQEAVASGHGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKW 119

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190
            +M   +  F   + ++  S    E          K + I    +S+  P++F G HN  
Sbjct: 120 HNMFIAKDLFTYTATAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQG 169

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
           + + V  DEAS   D+I +   G  T+ N    W    N  R +G F + F    + W  
Sbjct: 170 NRILVLFDEASAIDDVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNT 229

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           YQID+RTV+  +    E  +  YG DSD  ++ + G FP      FI     ++A  +  
Sbjct: 230 YQIDSRTVKISNKTKIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVY 289

Query: 311 IDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                 + P+I+G D A  G D   +V R+G  ++ +       
Sbjct: 290 KPGQFEHLPVIIGVDPAWTGSDSLEIVMRQGYYMKSLASIPKND 333


>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
 gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 469

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 18/313 (5%)

Query: 45  LEHFSQPHRWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           L+++     W  E  +        + V        K ++ +G+G+GKT L +  + W + 
Sbjct: 9   LDNYWDNPVWFAEDMLGFYPDPWQAKVLMDLAQHPKVSVRSGQGVGKTGLESIAITWYLC 68

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           TRP   +I  A +  QL + LWAE+SKWLS              ++ +G+          
Sbjct: 69  TRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVDKLLRWTKTKIYMNGF---------- 118

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              + +  T RT    RP+   G H  + M    DEASG  D I ++ILG  T       
Sbjct: 119 --EERWWATARTAV--RPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLTGY--ENK 171

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
            ++  N  + +G FYD  N   + +K +++ +           E +  +YG DSDV R+ 
Sbjct: 172 LLLCGNPTKTSGTFYDSHNRDRDTYKSHKVSSMDSPRTSKENIEMLKKKYGADSDVFRVR 231

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
           +LG FP+ E ++ I     E+A            L +G DIA  G DKT++  R GN + 
Sbjct: 232 VLGDFPKGEADSLISLEVTEQAAETVVDISNAYTLNIGADIARFGDDKTIIAPRIGNRVL 291

Query: 344 HIFDWSAKLIQET 356
            +  +S K   ET
Sbjct: 292 DLQQYSKKDTMET 304


>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
 gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
          Length = 499

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 16/337 (4%)

Query: 8   DQKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
                +E+      A  + SF +    +V+  FPWG  G  L + + P +WQ E +E++ 
Sbjct: 1   MNASNREIDYEQELANDIASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIG 60

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
               +   +    + + A+++G GIGK+ L +W++ W + T      +  AN+E+QL+  
Sbjct: 61  EQLRAGAKDRGE-VIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTK 119

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W EV+KW  +    HWF++   +L  +    E          K++ I    +S+   + 
Sbjct: 120 TWPEVAKWNRLSITAHWFKLTGTALISTDPDHE----------KNWRIDAVPWSDTNTEA 169

Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ +    W    N  R +G F + F 
Sbjct: 170 FAGLHNEGKRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFT 229

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                W+  Q+D+RTV+G +       I+ YG DSD  RI + G FP+      IP +++
Sbjct: 230 KFKHRWRHRQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWV 289

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
            EAM R+ +  L   L+ G DIA  G D  V+ FRRG
Sbjct: 290 AEAMRRDGVYGLDDALVCGIDIARGGMDNNVIRFRRG 326


>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 484

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 151/327 (46%), Gaps = 21/327 (6%)

Query: 35  FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P+   G  ++++  +P  +  + +          V +      K ++ +G+G+GKT L
Sbjct: 5   FIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVGKTAL 64

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    +   +     ++  G 
Sbjct: 65  EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMVG- 123

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      DS+ +  T RT +  +P+   G H  H M +  DEASG  D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVADPIMEAILG 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
             +  +     +M  N   + G FYD  N   + ++ +++ +   +  +    + +I +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKY 227

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
           G +SDVAR+ I G+FP+  +++FI    +E A      D     +    +G D+A  G D
Sbjct: 228 GENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDD 287

Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
            T+V  R G        +S +   +T 
Sbjct: 288 STIVFPRIGAKALPFEKYSKQDTMQTT 314


>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 500

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 16/332 (4%)

Query: 25  VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
                 FV+  FPWG  G   ++   P  WQ E +  +     +  + +  ++ + A+S+
Sbjct: 26  AADPLGFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGASAA--SVIREAVSS 82

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           G G+GK+ L AW++LW +ST      +  AN+E QLK   WAE++KW  +    +WF+  
Sbjct: 83  GHGVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCT 142

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGT 203
           + +L  +    E          K + +    +SE   + F G HN    + +  DEAS  
Sbjct: 143 ATALISTQAGHE----------KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAI 192

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           PD I +   G  T+ +    W    N  R  G F + F      W   ++D+RT    D 
Sbjct: 193 PDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDK 252

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMG 321
                 +  YG DSD  R+ + G+FP+     FI  + + EA  R    D Y  AP I+G
Sbjct: 253 NQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILG 312

Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
            D+A  G D++V+  R+G        +     
Sbjct: 313 VDVARSGSDQSVITRRQGLACLEQRKFRGLDT 344


>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
 gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
          Length = 469

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 17/310 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           ++  P  +  + +        S+V  +     K +I +G+G+GKT L +   +W +STRP
Sbjct: 12  YWDNPVWFAEDMLNFKADKWQSDVLMALAQTPKVSIRSGQGVGKTGLESIATVWYLSTRP 71

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++  A +  QL + LWAE++KWLS        E     ++  G+             
Sbjct: 72  FPKVVATAPTRQQLYDVLWAEIAKWLSNSKVEKLLEWTKTKVYMKGF------------E 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + +  T RT    +P+   G H  + M    DEASG  D I ++ILG  +        ++
Sbjct: 120 ERWWATARTAV--KPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLS--GAENKLLL 174

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N  R +G FYD  N   + +K +++ +           E +  +Y   SD  R+ +LG
Sbjct: 175 CGNPTRTSGTFYDSHNRDRDLYKTFKVSSLDSPRTSKDNIEMLKRKYHEGSDPWRVRVLG 234

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           +FP+ E ++ I    +E +  RE        L +G DIA  G D+T++  R G  +  + 
Sbjct: 235 EFPKGESDSLISLEAVETSTIREVNISNDYILNIGADIARYGDDETIIAPRIGGKVFDLL 294

Query: 347 DWSAKLIQET 356
            +S K   ET
Sbjct: 295 TYSKKDTMET 304


>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 471

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 21/327 (6%)

Query: 35  FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P+   G  ++++  +P  +  + +         NV N      K ++ +G+G+GKT L
Sbjct: 5   FIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    ++  +     ++  G 
Sbjct: 65  EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      DS+ +  T RT +  +P+   G H  H M +  DEASG  D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
             +  +     +M  N   + G FYD  N   + ++ +++ +   +  +    E I+ +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
           G +SDVAR+ I G+FP+  +++FI    +E A  ++  D L        +G D+A  G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287

Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
            T++  R          +S +   ET 
Sbjct: 288 STILFPRIATRALEYEKYSKRSTMETT 314


>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 495

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 62/373 (16%)

Query: 1   MPRLISTDQKLEQELHEML--MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           +   ++T++++ Q++   L  ++ +  ++F   ++                +P  WQ E 
Sbjct: 3   VSNDVTTEEEVLQDIITQLLEIYVDDPVAFVEDILEV--------------EPDPWQKEV 48

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  +  H H             ++ +G+G+GKT + +W+ +W +  RP   IIC A ++ 
Sbjct: 49  LNDIANHSH------------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQ 96

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           QL + LWAE++KWL+    +   +     ++  G+               +  T +T + 
Sbjct: 97  QLYDVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGF------------EDRWFATAKTAT- 143

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            RP+   G H  + M    DEASG  D I ++ILG  +         M  N  + +G F+
Sbjct: 144 -RPENMQGFHEDY-MLFIADEASGIADDIMEAILGTLS--GSENKLFMCGNPTKTSGVFF 199

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
           D  N     +K +++ +           E +  +YG  SDV R+ + G+FP+ E + FI 
Sbjct: 200 DSHNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFIS 259

Query: 299 HNYIEEAMSREAIDDLY-----------------APLIMGCDIAGEGGDKTVVVFRRGNI 341
               E A  RE                       A + +GCD+A  G D+T++  RRG  
Sbjct: 260 LETAEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWK 319

Query: 342 IEHIFDWSAKLIQ 354
           +  +     +   
Sbjct: 320 VLPLQVHHQRDTM 332


>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 471

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 21/327 (6%)

Query: 35  FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P+   G  ++++  +P  +  + +         NV N      K ++ +G+G+GKT L
Sbjct: 5   FIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A  +LW ++ RP   +I  A +  QL + LWAEV+KWL+    ++  +     ++  G 
Sbjct: 65  EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      DS+ +  T RT +  +P+   G H  H M +  DEASG  D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
             +  +     +M  N   + G FYD  N   + ++ +++ +   +  +    E I+ +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
           G +SDVAR+ I G+FP+  +++FI    +E A  ++  D L        +G D+A  G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287

Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
            T++  R          +S +   ET 
Sbjct: 288 STILFPRIATRALEYEKYSKRSTMETT 314


>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 470

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 18/312 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           ++  P  +  + M        S V  +     K ++ +G+G+GKT L + ++ W + TRP
Sbjct: 12  YWDNPVWFAEDMMNFHADKWQSEVLMALAQSPKVSVRSGQGVGKTGLESIVVTWYLCTRP 71

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              +I  A +  QL + LWAE+SKWL+     +  E     ++  G+            S
Sbjct: 72  FPKVIATAPTRQQLYDVLWAEISKWLASSKIENLLEWTKTKIYMKGY------------S 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + +  T +T +  RP+   G H  + M    DEASG  D I ++ILG  T        +M
Sbjct: 120 ERWWATAKTAT--RPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLTGY--ENKLLM 174

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N  R +G FYD  N   + +K +++ +           E +  +Y   SDV R+ + G
Sbjct: 175 CGNPTRTSGTFYDSHNRDRDLYKTFKVSSLESPRTSKDNIEMLKRKYHEGSDVWRVRVEG 234

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           +FP+ E ++ I   Y E A   +  +      L +G DIA  G D++V+  R GN +  +
Sbjct: 235 EFPKGESDSLISLEYAETATITKINNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDL 294

Query: 346 FDWSAKLIQETN 357
             ++ K   ET 
Sbjct: 295 LTYTKKDTMETT 306


>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
 gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
          Length = 461

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 32/309 (10%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P  WQ E ++A+  +             + A+ +G G+GKT L AW +LW + TRP  
Sbjct: 25  AEPDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYP 72

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            I C A +  QL + LWAE SKWL   P  + +FE Q   +    +              
Sbjct: 73  KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQY------------PG 120

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            +  T RT    +P+   G H  H + +  DEASG  D I ++I G  T  +     +M 
Sbjct: 121 RWFATARTS--NKPENMAGFHEEHLLFII-DEASGIADNIFETIEGALTTSD--AKLLMC 175

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            N  + +G F+D F      +   ++     + +   + E +  +Y  DSDV R+ +LG+
Sbjct: 176 GNPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGE 235

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           FP+ E + FI  + +E A  R+   D    L +G D+A  G D+TV+  R G  + ++  
Sbjct: 236 FPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKA 293

Query: 348 WSAKLIQET 356
           ++ +    T
Sbjct: 294 YTKQDTMTT 302


>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 487

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 23/344 (6%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           +++  +            FV   F W  +    ++   P  WQ++ ++ V          
Sbjct: 4   EDIELLQALGSLASDPVAFVYFAFDWDSEELKGQN---PQTWQIKTLKEVGEGL------ 54

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S  T  + A ++G GIGK+ L AW++LW ISTRP    +  AN+ TQL+   WAE+SKW 
Sbjct: 55  SLSTALQHATASGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWY 114

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-H 191
            +   + +F + S ++                  + + I    +S +R ++F G HN  +
Sbjct: 115 HLFRGKKFFTLTSTAIF----------CRQEGHERTWRIDAIPWSVDRTESFAGLHNQGN 164

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            + +  DEAS   + I +   G  T+ +    W++  N  R  G F+D F+   + W   
Sbjct: 165 RLLLIFDEASAIDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQ 224

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           +ID+RTV+  +    +  I  YG+DSD  ++ +LG+FP      FI    +  A  R  +
Sbjct: 225 KIDSRTVDISNKTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPL 284

Query: 312 DDL---YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                 +AP I+G D A  GGD TV+  R+G   E + ++    
Sbjct: 285 RTAEYDFAPCIIGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQND 328


>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
 gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 452

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 30/307 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +  +  +             + ++ +G+G+GKT L A   LW +S  P   +
Sbjct: 6   PDDWQASTLMDLANN------------PRVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           IC A +  QL + LWAE++KW S  P  +   +     ++   +             + +
Sbjct: 54  ICTAPTRQQLHDVLWAEINKWQSKSPVLKRILKWTKTKIYMKNY------------EERW 101

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T RT +  +P+   G H  + M    DEASG  D I ++ILG  +        +M  N
Sbjct: 102 FATARTAT--KPENMQGLHEDY-MLFIVDEASGVADPIMEAILGTLSGEFNKI--LMCGN 156

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             + +G FYD  N    D+K  ++               +  +YG  SDV R+ + G+FP
Sbjct: 157 PTKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFP 216

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           +   + FI     E A     ++     L +G D+A  G D+T +    G  I       
Sbjct: 217 RGGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHHF 276

Query: 350 AKLIQET 356
            K    T
Sbjct: 277 KKGTMVT 283


>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
 gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 19/314 (6%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L + + P  +  + ++A        +  S       ++ +G GIGK+ + AW ++W + T
Sbjct: 8   LYYANHPVEFVQDILKADPDPEQKKILRSLVENQMTSVRSGHGIGKSAVEAWSVIWFMCT 67

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMG 163
            P   I C A ++ QL + LWAE+SKW                 L+  G           
Sbjct: 68  HPYPKIPCTAPTQHQLFDILWAEISKWKRNNKTLDSELIWTKEKLYMKG----------- 116

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             ++ +    RT S   PD   G H  H + +  DEASG  D I + +LG  +   P   
Sbjct: 117 -HAEEWFAVARTAST--PDALQGFHAEHMLYII-DEASGVEDKIFEPVLGALST--PGAK 170

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
            +M  N  +L+G+FYD  N   E +  + ID R    +   F + II+ YG DSDV R+ 
Sbjct: 171 LLMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVR 230

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNII 342
           + G FP  E + +IP   +E++++ E     +  +I +GCD+A  G DKTV+ +R    +
Sbjct: 231 VAGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKV 290

Query: 343 EHIFDWSAKLIQET 356
           +       +   +T
Sbjct: 291 QFFKKRVGQDTMKT 304


>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
 gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
          Length = 476

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 19/312 (6%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +   P  +  E +                   K AI +G+G+GKT + A  +LW +   P
Sbjct: 20  YRKNPVLFAQEVLLFEPDDWQKQALMDLAESPKVAIKSGQGVGKTGMEAVALLWFLCCYP 79

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGID 165
              I+  A ++ QL + LW+EVSKW+S  P      +     ++  G            +
Sbjct: 80  YPRIVATAPTKQQLHDVLWSEVSKWMSKSPLLSDILKWTKTYIYMVG------------N 127

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
            K +    RT +  +P+   G H  + M    DEASG  D I ++ILG  +    N   +
Sbjct: 128 EKRWFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLS--GANNKLL 182

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           M  N  R +G FYD FN+    ++ + + +   +  +    E +I +YG DS+V  + + 
Sbjct: 183 MCGNPTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVF 242

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEH 344
           G+FP+QE + FI  + +E     +  DD+    I  G D+A  G D+TV+    G  I  
Sbjct: 243 GEFPKQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITL 302

Query: 345 IFDWSAKLIQET 356
              +  + +  T
Sbjct: 303 PVSFRGQSLMTT 314


>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
 gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
          Length = 513

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 155/354 (43%), Gaps = 29/354 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIK------------GKPLEHF 48
           M +    + +  Q   ++    +  L    FVM  +PW                   +  
Sbjct: 1   MAKKEEINYEH-QLAIDIGGFYDDPL---GFVMYAYPWDTDPDLQIVKLPEPWASKYDSV 56

Query: 49  SQPHRWQLEFMEAV-DVHCHSNVNNSNPT-IFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
             P  W  E  + + +V   ++ N  +P   F  +IS+G GIGK+  ++W++ +++STRP
Sbjct: 57  YGPDAWFCEMCDQLQEVIRKNDFNGVDPVDAFLYSISSGHGIGKSCASSWLIHFVMSTRP 116

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               +  +N+  QL+   W E+ KW   L ++HWF   +   + + ++ +  E       
Sbjct: 117 NSKGVVTSNTSEQLRTKTWGELGKWTKKLINKHWFVYNNGKGNMNFYHKDYAE------- 169

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAV-FNDEASGTPDIINKSILGFFTELNPNRFWI 225
             + +  +T  EE  ++F G H          DEAS  PD I +   G  T+  P  FW 
Sbjct: 170 -TWRVDAQTCREENSESFAGLHCASSTPWYLFDEASAVPDKIWEVAEGGLTDGEP--FWF 226

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           +  N  R +G F + +    + W R QID+ TV+  +        S YG DSD  R+ + 
Sbjct: 227 VFGNPTRNSGRFRECWRRFRQRWNRKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVRVK 286

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           G FP    N  I    +E AMSR A     +P +M  D+A  GGD  V  FR G
Sbjct: 287 GVFPSASSNQKISGALLEAAMSRTAHVIPGSPRVMSLDVARGGGDNCVFRFRHG 340


>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 506

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 33/311 (10%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + +  +                + A+ +G+G+GKT + A  +LW +S      
Sbjct: 49  EPDEWQRDALMDLAE------------ESRVAVKSGQGVGKTGIEAVAVLWFLSCFRYAR 96

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           ++  A +  QL + LW+E++KW    P  +         ++  G+             K 
Sbjct: 97  VVATAPTRQQLHDVLWSEIAKWQERSPLLKAILRWTKTYVYVKGY------------EKR 144

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +    RT +  +P+   G H  + M    DEASG  D I +++LG  +    N   +M  
Sbjct: 145 WFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAVLGTLS--GGNNKLLMCG 199

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  R  G FYD F      +  + + +      D    + +I +YG DS++ R+ + G F
Sbjct: 200 NPTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLF 259

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDL---YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           P+Q+ + FI    I++  SR+         A +I+G D+A  G D+TV+       I+ +
Sbjct: 260 PKQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIKMV 319

Query: 346 FDWSAKLIQET 356
            +   + +  T
Sbjct: 320 RNRRGQNLMAT 330


>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
          Length = 462

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 31/313 (9%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P  WQ       D+   +  +N      + A+ AG G+GKT   AW +LW + TRP  
Sbjct: 31  AEPDEWQ-------DIALQALADNQ-----RVAVRAGHGVGKTATEAWAVLWFLLTRPFP 78

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            I C A ++ QL + LW E++KWL   P    + E Q   +    +             +
Sbjct: 79  KIPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQY------------EE 126

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            +  T RT    +P+   G H  H + V  DEASG  + I ++I G  T        +M 
Sbjct: 127 RWFATARTS--NKPENMAGFHEEHLLFVI-DEASGVDNAIFETIDGALTTAG--SKLVMF 181

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            N  R NG FYD F+   + +  Y+I     +     +   +  +YG DSD+ R+ + G+
Sbjct: 182 GNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQGE 241

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           FPQ + ++FIP   +E+A  R+        L +G D+A  G D+TV+  R G +   +  
Sbjct: 242 FPQGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRLDR 301

Query: 348 WSAKLIQETNQEG 360
           +  +    T   G
Sbjct: 302 YGGR-TPTTETVG 313


>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
          Length = 484

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 19/300 (6%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L +   P  +  + + A       ++  S       ++ +G GIGK+ + AW ++W +
Sbjct: 6   AVLFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIWYM 65

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQS 161
            TRP   I C A +E QL + LWAE+SKW+   P  R         L+  G         
Sbjct: 66  CTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRDDLIWTKEKLYMQG--------- 116

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
                + +    RT +   P+   G H  H + +  DEASG  D + + +LG  T  +  
Sbjct: 117 ---HPEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGED-- 168

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
              +M  N  RL G+FYD  +   E +    +D R  + +   F + II  +G DSDV R
Sbjct: 169 AKLLMMGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDVFR 228

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
           + + GQFP+   ++ I   + EEA + +        + +G D+A  G D + +       
Sbjct: 229 VRVAGQFPKSTPDSLIAMEWCEEAANLQVY-APGGQIDIGVDVARYGDDSSALYPLIDKK 287


>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 473

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 19/311 (6%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
             P  +  E +        +          K +I +G+G+GKT L A + LW ++  P  
Sbjct: 4   DDPVMFFREVLNFEPDEWQAQAARDLAANPKVSIKSGQGVGKTGLEAAVFLWFVTCFPHP 63

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+  A ++ QL + LW+E+SKW+S        E+ S+ L  +  Y  ++ +      K 
Sbjct: 64  RIVATAPTKQQLHDVLWSEISKWMSKS------ELLSILLKWTKTYVYMVGE-----EKR 112

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +    RT +  +P+   G H  + M    DEASG  D I ++ILG  +    N   ++  
Sbjct: 113 WFGVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLS--GANNKLLLCG 167

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  + +G FYD        +K + + +      +    + ++ +YG DS+V R+ + G+F
Sbjct: 168 NPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEF 227

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           P QE + FIP + IE+  S+    D       + +G D+A  G D+T++        + +
Sbjct: 228 PNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKIV 287

Query: 346 FDWSAKLIQET 356
            +   + +  T
Sbjct: 288 RNRRGQNLMAT 298


>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
          Length = 473

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 31/310 (10%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           F  P  WQ E   A+  +             K  I +G+G+GKT   A  +LW +S    
Sbjct: 30  FFYPDEWQKEAAFALRDN------------SKVTIKSGQGVGKTGFEAATLLWFLSCFEN 77

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             ++  A +  QL + LWAEVSKW S  P  +   +     +   G              
Sbjct: 78  ARVVATAPTLHQLNDVLWAEVSKWQSKSPLLKEILQWTKTKISMIG------------SK 125

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + +    RT +   P+   G H  + M    DEASG  D I ++ILG  T    N   ++
Sbjct: 126 ERWYAVARTATT--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLT--GSNNKLLL 180

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N  + +G FYD      + +    +++   +  +    + +I +YG +S+V R+ + G
Sbjct: 181 CGNPTKASGTFYDSHTSDRKLYYCITVNSAESKRTNKDNIDSLIRKYGEESNVVRVRVKG 240

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
            FP+Q+ + ++P   +E ++  E I        +G D+A  G D TV+     N I    
Sbjct: 241 LFPKQDDDVYMPLEMLEASIILEEIPPADI-CTLGVDVARFGDDDTVIARNMNNKITLEK 299

Query: 347 DWSAKLIQET 356
               + + +T
Sbjct: 300 IRHGQDLMKT 309


>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
 gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
          Length = 484

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 139/297 (46%), Gaps = 19/297 (6%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L +  +P  +  + +         ++  S       ++ +G G+GK+ + +W ++W
Sbjct: 4   DDAVLFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVIW 63

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLE 159
            + TRP   I C A ++ QL + LWAE+SKWL   P  ++        ++ +G+      
Sbjct: 64  FLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGY------ 117

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
                  + +    RT +   P+   G H  H + +  DEASG  D + + +LG  T  +
Sbjct: 118 ------PEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGED 168

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                +M  N  RL+G+F+D  +    ++    ID R  + ++  F + II+ +G+DSDV
Sbjct: 169 --AKLLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSDV 226

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            R+ + GQFP+   ++ I  ++ E A   +  + +   + +G D+A  G D + +  
Sbjct: 227 FRVRVAGQFPKSTPDSLIMMDWCEAATQLKP-ETVRNRVDIGVDVARYGDDSSALYP 282


>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
 gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
          Length = 462

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/331 (28%), Positives = 148/331 (44%), Gaps = 42/331 (12%)

Query: 42  GKPLEHF------SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            K LE F      ++P + Q++ + A+D               K +I +G G GKTTL A
Sbjct: 13  AKSLEFFVRVILKAKPTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLA 61

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
           W++LW    R    I   A +  QL + L  E+ KW   +P ++  E++  +        
Sbjct: 62  WIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEVEVKTEKID---- 117

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     +       RT  +++P+   G H T+ +A   DEASG P +I +   G  
Sbjct: 118 ---------FANGNFAVPRTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAM 167

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           T  +     IM +N  R  G+FYD  +     W+ +Q +    E +   + E    +YG 
Sbjct: 168 TGEST--LVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGE 225

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           DSDV R+ I G+FP+Q  N       +++A +RE +DD  A +  G D+A  G DK+V+ 
Sbjct: 226 DSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTREIVDDSGAEV-WGLDVADFGDDKSVLA 284

Query: 336 FRRGNIIEHIF--------DWSAKLIQETNQ 358
            R+G     I         D +  LI E NQ
Sbjct: 285 KRKGKHFHEITARSGLTLPDLAGWLIYEYNQ 315


>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
 gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
          Length = 460

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q E ++AV  H             + A+ A  G+GKT + AW+ LW + T     +
Sbjct: 31  PWEKQEEILKAVRDHK------------RVAVRACHGVGKTKVAAWVALWFLYTHHNSKV 78

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A +  Q++N LW E+    +                      ++L+  + +  + + 
Sbjct: 79  ITTAPTWHQVENLLWREIHAAHAASRI--------------PLGGKVLQTQIELGEQWF- 123

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                 S ++P+ F G H  H + +  DEASG       +  GF T +      ++  N 
Sbjct: 124 --ALGLSTDKPERFQGFHAEHILLIV-DEASGVEQYTFDAAEGFLTSIG--AKLLLIGNP 178

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHEGIISRYGLDSDV 279
            +L+G FY+ F  PL  + +  I                  +   + E    ++G DS +
Sbjct: 179 TQLSGEFYNAFRSPL--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPL 236

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
               +LG+FP+Q  +  IP  +IE A  R  + +   P+ +G D+A  G D TV++ RRG
Sbjct: 237 WYSRVLGEFPEQGNDTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYGTDTTVIMLRRG 296

Query: 340 NIIEHIFDWSAKLIQETNQE 359
           +  E ++    +   E   +
Sbjct: 297 DKAEIVYQLRGQDTMEVTGK 316


>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
 gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
          Length = 503

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 32/316 (10%)

Query: 28  FKNFVMRF-FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           +++ V+R+ + W +    +E F     WQ E +          +N+   T  +  +++G 
Sbjct: 16  WRDMVIRYRYNWALA--VVELFGMIPTWQQEEI----------MNSVQETGSQTTVTSGH 63

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK++L A M+L  +   P   +I +AN   Q+K  ++  V  + +    RH +     
Sbjct: 64  GTGKSSLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYF 123

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           +L  + +Y +  +         + + C+ Y     +   G H  H + +  DEASG  D 
Sbjct: 124 TLTDTMFYEKSRKGI-------WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDK 175

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRYQIDTRTVE 259
               + G  TE +     +M S   R +G+FYD  +        P   W    +++    
Sbjct: 176 AIAIMRGALTEED--NRMLMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAP 233

Query: 260 GIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
            +   F    +  Y G DS    +++LG+FP+      +  +  + A  R+   +     
Sbjct: 234 HVTLKFIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGW 293

Query: 319 IMGCDIAGEGGDKTVV 334
           +   D+ G G DK+++
Sbjct: 294 VATADV-GNGRDKSIL 308


>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
 gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
          Length = 486

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 128/342 (37%), Gaps = 62/342 (18%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           ++P + Q++ + AV  +             + A+ +  G GK+ +   ++LW + +    
Sbjct: 28  TRPWKKQIDIISAVRDN------------PRTAVRSCHGAGKSFIAGQVILWFLYSFYPS 75

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++  A +  Q++  +W EV                            LL +   I    
Sbjct: 76  IVLSTAPTWRQVEKLIWKEVRASYRRSKV--------------PLGGNLLPKRPEIQIIQ 121

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                   S   PD F G H  + + V  DEA+G P+ I ++I G  T  +     ++  
Sbjct: 122 DEWYAVGLSTNEPDRFQGFHEEN-ILVVVDEAAGVPEEIFEAIEGVLTSEH--ARLLLLG 178

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---------------------------- 260
           N   + G FY+ F  P   W+   I   T                               
Sbjct: 179 NPTSVGGTFYNAFRTP--GWENISISAFTTPNFTAFGITEDDIINKTWESKITNSLPNPK 236

Query: 261 -IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            I   +      R+G +S   +  +LGQFP +  +  IP  +IE AM+R        P+ 
Sbjct: 237 LITPAWVADKYRRWGPNSPAYQARVLGQFPSEGEDTLIPLAWIEAAMARWEDTPEGEPIE 296

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           +G D+A  G DKTV+  RRG  +  +  ++ +   ET   GC
Sbjct: 297 IGVDVARFGSDKTVIAARRGQKVLPLNVYAKQDTMET--VGC 336


>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
 gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
 gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
 gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
 gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
 gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
 gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
          Length = 494

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + +      K ++S+G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + M++  I   PG   I +AN   Q+   ++  +    +    R  +      L  +
Sbjct: 64  DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            +Y E+  + +      +T+  + +     +   G H  H + +  DEASG  D     I
Sbjct: 124 AFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +   
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
          Length = 494

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + +      K ++S+G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + M++  I   PG   I +AN   Q+   ++  +    +    R  +      L  +
Sbjct: 64  DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            +Y E+  + +      +T+  + +     +   G H  H + +  DEASG  D     I
Sbjct: 124 AFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +   
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
          Length = 494

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + +      K ++S+G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + M++  I   PG   I +AN   Q+   ++  +    +    R  +      L  +
Sbjct: 64  DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            +Y E+  + +      +T+  + +     +   G H  H + +  DEASG  D     I
Sbjct: 124 AFY-EITGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +   
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F +  ++ Y G D+ +  I++ G FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 494

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 122/310 (39%), Gaps = 31/310 (10%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
             + W      +  F +   WQ + +          + +      K ++S+G G GK+ +
Sbjct: 18  YRYDWIAAADVM--FGKTPTWQQDQI----------IESVQEPGSKTSVSSGHGTGKSDM 65

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            + M++  I   PG   I +AN   Q+   ++  +    S    R  +  +   L  + +
Sbjct: 66  TSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKINWSTATSRFPWLAEYFVLTDTSF 125

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
           Y E+  + +      +T+  + +     +   G H  H + +  DEASG  D     + G
Sbjct: 126 Y-EITSKGV------WTVVPKGFRLGNEEALAGEHADHLLYII-DEASGVSDKAFGIMTG 177

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSGFH 266
             T  +     +  S   R +G+FYD  +        P   +    +++     +   F 
Sbjct: 178 ALTGKDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPNGIYTAITLNSEESPLVTPEFI 235

Query: 267 EGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           +  ++ Y G DS +  I++ G FP+ +    +  + +E A  R+         I   D+A
Sbjct: 236 KMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKVKIAKGWGWIACVDVA 295

Query: 326 -GEGGDKTVV 334
            G G DK+V+
Sbjct: 296 GGTGRDKSVI 305


>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
          Length = 248

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +   P  +  E +         +V++        ++ +G+G+GKT L A + LW +   P
Sbjct: 23  YRKSPKTFFKEILNFSPDKWQESVSDDIAKYRFVSVRSGQGVGKTALEAAISLWFLCCFP 82

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGID 165
              ++C A +  QL + LWAE+SKW S  P  +   +     ++   +            
Sbjct: 83  FPRVVCTAPTRQQLNDVLWAEISKWQSQSPILKRILKWTKTKIYMKNY------------ 130

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
            + +  T RT +  +P+   G H  + M    DEASG  D I  +I G  +  + N+   
Sbjct: 131 EERWFATARTAT--KPENMQGFHEDY-MLFIVDEASGVDDRIMAAIFGTLSG-DYNK-LF 185

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           M  N  + +G+F+D  N     ++ +++             E + ++YG  SDV R+ +L
Sbjct: 186 MCGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVL 245

Query: 286 GQF 288
           G+F
Sbjct: 246 GEF 248


>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
 gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
          Length = 505

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 34/326 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q   + A+            P   K  + AG G+GKTT  A  + W +        
Sbjct: 21  PTAQQAGLLSAI-----------APAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKT 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHY 169
            C A + +QL+  LW+E+++       R        +L     +A            + +
Sbjct: 70  PCTAPTASQLEQILWSELARLRRRADARAQGTGLPAALRLEALFAVSGRAIADRGTPREW 129

Query: 170 TITCRTYSEERPDTFVGPHNTHG------------------MAVFNDEASGTPDIINKSI 211
            +  RT   ++PD   G H +                    +    +EASG PD + +  
Sbjct: 130 FVVARTARRDQPDALQGFHASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVA 189

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
            G  +   P    +M  N  R  G+F          +   ++       +D G+  G++ 
Sbjct: 190 EGALSS--PGARLLMVGNPTRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVR 247

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGG 329
           +YG +S+V R+   G FP+Q+ +  I     E A++R   A         +G D+A  G 
Sbjct: 248 KYGAESNVVRVRADGAFPRQDDDVLIALETAEAALARPLPARMATEDERRLGVDVARFGD 307

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQE 355
           D+TV + R G ++  I   + +    
Sbjct: 308 DRTVFLLRIGPVVGAIEVTAGRDTMA 333


>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
          Length = 411

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           +   T  +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++
Sbjct: 49  SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
            +    RH +      L  + +Y              + + C+ Y     +   G H  H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
            + +  DEASG  D     + G  TE +     +M S   R +G+FYD  +        P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNP 218

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              W    +++     +   F +  +  Y G DS    +++LGQFP++     +  +  +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            A  R+ + +     +   D+ G G DK+V+
Sbjct: 279 RAARRKVLLEKNWGWVATADV-GNGRDKSVL 308


>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
          Length = 502

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           +   T  +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++
Sbjct: 49  SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
            +    RH +      L  + +Y              + + C+ Y     +   G H  H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
            + +  DEASG  D     + G  TE +     +M S   R +G+FYD  +        P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNP 218

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              W    +++     +   F +  +  Y G DS    +++LGQFP++     +  +  +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            A  R+ + +     +   D+ G G DK+V+
Sbjct: 279 RAARRKVLLEKNWGWVATADV-GNGRDKSVL 308


>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
          Length = 453

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 113/269 (42%), Gaps = 19/269 (7%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
             T  +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +
Sbjct: 2   QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 61

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
               RH +      L  + +Y              + + C+ Y     +   G H  H +
Sbjct: 62  NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAHLL 114

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLE 246
            +  DEASG  D     + G  TE +     +M S   R +G+FYD  +        P  
Sbjct: 115 LIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 171

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
            W    +++     +   F +  +  Y G DS    +++LGQFP++     +  +  + A
Sbjct: 172 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 231

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
             R+ + +     +   D+ G G DK+V+
Sbjct: 232 ARRKVLLEKNWGWVATADV-GNGRDKSVL 259


>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
 gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
          Length = 494

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + ++       ++++G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + + +  I   PG  +I +AN   Q+ + ++  +    +    R  +  +   L  +
Sbjct: 64  DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            ++ E+  + +      +TI  ++      +   G H  H + +  DEASG  D     I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRSGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +D+ 
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
 gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
 gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
 gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
 gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
 gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
 gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
 gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
          Length = 494

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + ++       ++++G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + + +  I   PG  +I +AN   Q+ + ++  +    +    R  +  +   L  +
Sbjct: 64  DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            ++ E+  + +      +TI  ++      +   G H  H + +  DEASG  D     I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +D+ 
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
 gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
          Length = 494

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
            +  + W      L  F +   WQ + +          + ++       ++++G G GK+
Sbjct: 16  ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            + + + +  I   PG  +I +AN   Q+ + ++  +    +    R  +  +   L  +
Sbjct: 64  DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            ++ E+  + +      +TI  ++      +   G H  H + +  DEASG  D     I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
            G  T  +     +  S   R +G+FYD  +        P   +    +++     +D+ 
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233

Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F    ++ Y G D+ +  I++ G+FP+ +    +  + +E A  R+         +   D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293

Query: 324 IA-GEGGDKTVV 334
           +A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305


>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
          Length = 502

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 19/271 (7%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           +   T  +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++
Sbjct: 49  SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
            +    RH +      L  + +Y              + + C+ Y     +   G H  H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
            + +  DEASG  D     + G  TE +     +M S   R +G+FYD  +        P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSRAKTPDNP 218

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              W    +++     +   F +  +  Y G DS    +++LGQFP++     +  +  +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            +  R+ + +     +   D+ G G DK+V+
Sbjct: 279 RSARRKVLLEKNWGWVATADV-GNGRDKSVL 308


>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
 gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
          Length = 492

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 122/327 (37%), Gaps = 32/327 (9%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
             P  W  + ++         + ++ P   + A+    G+GK+   A ++ W  +TR  M
Sbjct: 21  DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80

Query: 109 ----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                II  A++   L+  LW E+ KW   +         +L   P     ELL+  + +
Sbjct: 81  GKDWKIITTASAWRHLEVYLWPEIHKWAGRI------NFVALGRAPYNPRTELLDLRLKL 134

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----P 220
                T         +P+   G H    + +  DEA   P     SI G F+        
Sbjct: 135 THGAATAVA----SNQPERIEGAHAEELLYLL-DEAKIVPPATWDSIEGAFSNAGVDVAD 189

Query: 221 NRFWIMTSNTRRLNGWFYDIFNI--PLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGL 275
           N +    S     +G FYDI       EDW    +          I   + +   S++G 
Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA------IDDLYAPLIMGCDIAGEGG 329
           DS V    +LG+F   + ++ IP  ++E A+ R              PL  G D+   GG
Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQET 356
           D+TV+  R G  +  +     +    T
Sbjct: 309 DETVLAARDGWAV-TLETNRRRDTMAT 334


>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
 gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
          Length = 499

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 41/333 (12%)

Query: 51  PHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           P  +  + +         + V  +     + ++ AG   GK++L   +  + + TRP   
Sbjct: 18  PVNFFKDILNFHFLSEDQTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSR 77

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP---------------------HRHWFEMQSLSL 148
           +I  A +  QLK   WAEV+K  +                         R WF +   + 
Sbjct: 78  VIVTAPTYRQLKTIYWAEVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTAS 137

Query: 149 HPSGWYA------ELLEQSMGI-------DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
            P G         E++EQ M         D +   I  +    E+    +   +   + V
Sbjct: 138 TPEGMQGQHGDKTEVIEQIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLV 197

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             DE+SG  + I + + G  T+ +     ++  N  +  G+FY+    P   + +  + +
Sbjct: 198 MVDESSGVKNEIFEVLEG--TDYD---KLVLFGNMTKNTGYFYESVYNPKSKFYKVTMSS 252

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +       +   YG DS+V R+ + G+ P    N+    N I+ A  R      Y
Sbjct: 253 YNSPFMKKEQIHDLEETYGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEY 312

Query: 316 APLIMGCDIA-GEGGDKTVVVFRRGNIIEHIFD 347
             + +G D+  G GGD + +  ++ N +    D
Sbjct: 313 ETIKLGVDVGKGSGGDSSTIYEKKDNRVRKKLD 345


>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
 gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 30/296 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            +C +  NN         +    G GKT ++A  + W +     + +   A SE+ +K+ 
Sbjct: 39  EYCEAFKNNQT-----ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSG 93

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITC----RTYSE 178
           +W E+               Q L  + +  + EL E S   I  K    TC    R  S+
Sbjct: 94  IWNEL---------------QVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSK 138

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
           +      G H+ + + V  DEASG  D+I    L       P    ++ SN  + +G+F+
Sbjct: 139 DNIAAARGFHSKNNI-VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFF 197

Query: 239 DIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE-ILGQFPQQEVNN 295
             +  P   +DW +     R       G  E     YG  +    +  + G+FP  +V+ 
Sbjct: 198 KTWRDPELSKDWIKVHGSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDG 257

Query: 296 FIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            I   +++EA  +++AI +  AP+I G D AG G DK+V+  R  N++    +W+ 
Sbjct: 258 LISREFLDEAVTNKDAIPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAG 313


>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
 gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
          Length = 507

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 125/313 (39%), Gaps = 35/313 (11%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           WQLE    VD        NS+   F CA  +S G G GKT L+  + +W     PG    
Sbjct: 51  WQLEI---VDYIAKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQF 107

Query: 112 CIANSETQLK----NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            + NSE Q K      L   +SK LS +       ++S + + S   A+  E     D  
Sbjct: 108 ILTNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMW 161

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVF-NDEASGTPDIINKSILGFFTELNPNRFWIM 226
             T   ++ +E       G H  H M  F  DE++   D + +++   +T+         
Sbjct: 162 DVTYLLQSSTEA---ALSGLH--HPMMTFSFDESTYFNDHVWQALENMWTQ--GQVLCFC 214

Query: 227 TSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-------DSGFHEGIISRYGLDSD 278
           T N     N +F  +FN  L       + TR V  +       +      I   YG    
Sbjct: 215 TGNPSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHP 273

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDI--AGEGGDKTVVV 335
                +LGQFP++   N      I EAM RE  ++ ++ P+IMG D+  +   G  + + 
Sbjct: 274 RYIASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAIC 333

Query: 336 FRRGNIIEHIFDW 348
            R G  +  + ++
Sbjct: 334 VREGTAVRVLREY 346


>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
 gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
          Length = 572

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 27/290 (9%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P   Q+E + A+            P   + ++++G G GK+ L A + L  I T P   
Sbjct: 44  EPSFQQIEVINAL-----------TPVGARVSVASGHGTGKSHLTAALCLHFIITHPESL 92

Query: 110 IICIANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +  ANS  Q+ N +++ + + W+ +   + W E Q   +    +YA+  +    I  K 
Sbjct: 93  CMLTANSLDQVTNVVFSYIKRCWVKICQRQPWLE-QYFVITAKSFYAKGYKGVWQIFGK- 150

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                 T S+   +   G H    M V  DEASG  D   + + G  TE N N+  +++ 
Sbjct: 151 ------TCSKGNEEGLAGQHRRDYMVVV-DEASGVSDRAFEVLRGALTEDN-NKMLLISQ 202

Query: 229 NTRRLNGWFYDIFNI--PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEIL 285
              R  G F D          +    +++     ++  F       YG   S    I +L
Sbjct: 203 F-TRPTGHFADSQMELAEQGLYTAITLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVL 261

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           G  P       I  + +++              +   D+A GEG D +V+
Sbjct: 262 GVCPDDASGFLISRSLVDKGFEAVIEFADEWGWVAVADVAGGEGRDSSVL 311


>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
          Length = 520

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 30/292 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ E +            +      + ++++G G GK+     + LW +   P   ++ 
Sbjct: 41  TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--HYT 170
            A    QL+  +W E++  L  L +       +        Y  +L + + I      + 
Sbjct: 91  TAPQIGQLRTVVWKEINICLQRLRNNKALGWLAD-------YVVVLAEKIYIKGFKDTWF 143

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +  +T  + +P    G H  H M V+ DEA G  D + +  +G  T    N   ++TS  
Sbjct: 144 VFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHE--NNRAVLTSQP 200

Query: 231 RRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEIL 285
            +  G+FYD  +         W   + +      +        + +YG  +S    I I 
Sbjct: 201 AKNTGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIR 260

Query: 286 GQFPQQEVNNFIPHNYIE--EAMSREAIDDLYAPLIMGCDIAG-EGGDKTVV 334
           G+FP+ +    +     E  +A      +     +I+  D+ G  G D +V+
Sbjct: 261 GKFPELKGEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVI 312


>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
 gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
          Length = 520

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 30/292 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ E +            +      + ++++G G GK+     + LW +   P   ++ 
Sbjct: 41  TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--HYT 170
            A    QL+  +W E++  L  L +       +        Y  +L + + I      + 
Sbjct: 91  TAPQIGQLRTVVWKEINICLQRLRNNKALGWLAD-------YVVVLAEKIYIKGFKDTWF 143

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +  +T  + +P    G H  H M V+ DEA G  D + +  +G  T    N   ++TS  
Sbjct: 144 VFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHE--NNRAVLTSQP 200

Query: 231 RRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEIL 285
            +  G+FYD  +         W   + +      +        + +YG  +S    I I 
Sbjct: 201 AKNTGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIR 260

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAG-EGGDKTVV 334
           G+FP+ +    +     E    +  + +      +I+  D+ G  G D +V+
Sbjct: 261 GKFPELKGEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVI 312


>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
 gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
          Length = 189

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 31/202 (15%)

Query: 38  WGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W       E      P  WQ + M  V                + ++ +G+G+GKT L A
Sbjct: 16  WDDPVAFAEDMMGFDPDDWQCDVMMDV------------TQFPRTSVRSGQGVGKTGLEA 63

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +++W +  RP   ++C A ++ QL + LW EVSKWL     ++  +     ++  G   
Sbjct: 64  ALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLENSMVKNLLKWTKTKVYMIG--- 120

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                      + +  T RT    +P+   G H  + M    DEASG  D I ++ILG  
Sbjct: 121 ---------HEQRWFATARTA--NKPENMQGFHEDY-MLFIVDEASGVSDPIMEAILGTL 168

Query: 216 TELNPNRFWIMTSNTRRLNGWF 237
           +        +M  N  R +G F
Sbjct: 169 S--GAENKLLMCGNPTRTSGVF 188


>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
 gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
          Length = 553

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 104/295 (35%), Gaps = 32/295 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
                 ++ G  +GK+ L A + LW + T PG  ++  A S+  L   L+ E+ K L+  
Sbjct: 62  RARSVVVATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVLFRELQKALA-A 120

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             R    +  + +         L    G         C   +    +   G H+   M V
Sbjct: 121 SRRRGLGLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERLAGRHHADLMVV 180

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK------ 249
             DEASG      +      T LNP R   +  N       F+ +    L +        
Sbjct: 181 V-DEASGVQPEAWE----ALTSLNP-RKLFVCGNPLTPGTVFHKLHQRGLTEASDPSIPD 234

Query: 250 -----RYQIDTRTVEGID----------SGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                   I +     I+           GF      ++G  S +    + G FP   V+
Sbjct: 235 HARGVALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSHVEGVFPTVAVH 294

Query: 295 NFIPHNYIEEAMSREAIDDLYAP---LIMGCDI-AGEGGDKTVVVFRRGNIIEHI 345
             I   ++++A S E       P    ++GCD+ AG G D+T +V R    I  +
Sbjct: 295 ALIEPGWLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDEGGIREL 349


>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
 gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
          Length = 509

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 110/282 (39%), Gaps = 19/282 (6%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++A   H     ++ +    + ++S+G G GKT+  A + LW +      + I  A   +
Sbjct: 34  LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93

Query: 119 QLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            + + +W E +   + + +    +  +   +     Y    +        ++ +  ++  
Sbjct: 94  TVSDGVWKEFADLSTKISNGPQSWIWEYFVIESERVYVRGYKL-------NWFVIAKSAP 146

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              P+   G H    +    DEASG PD     I G  T+   NR  + +    R +G+F
Sbjct: 147 RGSPENLAGAHRD-WLLWLADEASGIPDDNFGVITGSLTDE-RNRMCLASQ-PTRSSGFF 203

Query: 238 YDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           Y+  +         W     ++     + + F      +Y  +    +I++ G+FP+   
Sbjct: 204 YETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEE--EYQIKVQGRFPENSS 261

Query: 294 NNFIPHNYIEEAMSREAI-DDLYAPLIMGCDIAGEG-GDKTV 333
              +    IE  + R  I  D +   ++  D+ G G  D+TV
Sbjct: 262 KYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETV 303


>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
 gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
          Length = 668

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     E    +YG  D    +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           I+  D+ G  G D +V+V 
Sbjct: 438 IITVDVGGGVGRDDSVIVI 456


>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 293

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            +  N  R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +
Sbjct: 2   FLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRV 61

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
           LG+FP+ E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN +  
Sbjct: 62  LGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFK 120

Query: 345 IFDWSAKLIQET 356
           + +   +   ET
Sbjct: 121 LLNHYKQDTMET 132


>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 663

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     E    +YG   D   +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
 gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
 gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
 gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
          Length = 663

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     +    +YG   D   +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
 gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
          Length = 431

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 112/289 (38%), Gaps = 35/289 (12%)

Query: 80  CAISAGR--GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           C I  GR  G  K T NA +  WL+    G  I+ +      LK          L  LP 
Sbjct: 26  CTIEKGRRFGFTKGTANACIE-WLL---EGQKILWVDTIAANLKRYFERYFLPELRQLPK 81

Query: 138 RHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
             W +  Q   L   G Y +                    S ERP+   G    +   + 
Sbjct: 82  ELWNWNAQDKQLKICGGYLDF------------------RSAERPENIEGF--GYDTVIL 121

Query: 197 NDEA--SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRY 251
           N+       P + + +I     + NPN    +    +  N  F+D+    + +   W+ +
Sbjct: 122 NEAGIILKDPYLWDNAISPMLLD-NPNSRAFIGGVPKGKNK-FFDLAQRGMRNEKGWRNF 179

Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  +     +     + +++  G  DSDVAR EI G+F     N+      IE A  ++ 
Sbjct: 180 QFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDTTSNSVFSLAAIEAAFRKQR 239

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
             D  AP+I   D+A EG D++V+  R+G+ +E +  +      E  +E
Sbjct: 240 YFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIASTSELARE 288


>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013150]
 gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013113]
 gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013150]
 gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013113]
          Length = 663

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     +    +YG   D   +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
 gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
          Length = 663

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     +    +YG   D   +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
 gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
          Length = 663

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L      +   
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       Y +  ++        + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +     +MTS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
           +     +    +YG   D   +I +LG+FP       I     EE     +I D +    
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
 gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
          Length = 484

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 39/313 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           + + P RW  + +         ++  S       A+ +  G GK+ + + +  W + T P
Sbjct: 24  YLADPARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHP 83

Query: 107 G--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                ++  A +  Q+K  LWAE++K  +    R         ++ + W  +    + G 
Sbjct: 84  PGEAFVVTTAPTGDQVKAILWAEINKAFAKAEARG--TPLPGRINETDWKYDKFLVAFGR 141

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
               Y           P  F G H  + + +  DEA G       + L   T ++     
Sbjct: 142 KPSDY----------NPHAFQGIHAKYVLVIL-DEACGISKQFWTAALAIATGVHCRILA 190

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG--------------IDSGFHEGII 270
           I   N       F  +       W   +I  R                  +   +   + 
Sbjct: 191 I--GNPDDPGSHFAQVCKSDR--WNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMA 246

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI----DDLYAPLIMGCDIAG 326
             +G +S +   ++  +FP    +  +  + +  A +RE +     D   P+ +G D+ G
Sbjct: 247 EEFGPESPIYLSKVDAEFPSDASDGVVRLSKL-MACTREPVHPYAPDRLVPVELGVDL-G 304

Query: 327 EGGDKTVVVFRRG 339
            GGD+T +  RRG
Sbjct: 305 AGGDETCIRERRG 317


>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
 gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
          Length = 433

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 110/318 (34%), Gaps = 50/318 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--GIGKTTLNAWMMLWLISTRPGMS 109
             WQ E                        I  GR  G  K   NA +  WLI    G  
Sbjct: 11  TDWQREVFFKNKAKF-------------TTIEKGRRSGFTKGMANACIE-WLI---EGKK 53

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I+ +      L+          L  LP   W F  Q   L     Y ++           
Sbjct: 54  ILWVDTVTANLQRYFERYFVPELKQLPADMWKFHAQDKKLTVGEGYLDM----------- 102

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWI 225
                   S ERP+   G        V  +EA        + + +I     +  PN    
Sbjct: 103 -------RSAERPENIEGFGYD---VVILNEAGIILKNSYLWDNAIRPMLLDY-PNSRAF 151

Query: 226 MTSNTRRLNGWFYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVAR 281
           +    +  N  F+D+ +  +   +DW  +QI +     +     + +I+  G  DSDV +
Sbjct: 152 IGGVPKGKN-RFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVK 210

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
            EI G+F     N   P + IE A  +    +  A  I G D+A +G D++V+  R G  
Sbjct: 211 QEIYGEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYH 270

Query: 342 IEHIFDWSAKLIQETNQE 359
           ++++  +      E  +E
Sbjct: 271 VKNLEGFRIASTTELARE 288


>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
 gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
          Length = 556

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 117/345 (33%), Gaps = 69/345 (20%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------- 106
            E +          + +S     + ++++G   GK  + A   +  +   P         
Sbjct: 57  REALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNSLGE 116

Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                   +   A ++ Q+KN +  E+S+  +    R    +  L+ +            
Sbjct: 117 IELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAYD----------- 165

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           +  ++  + +T     E   + + G H  H M V   EA+G  D    +I G       +
Sbjct: 166 IRTNNDEWFLTGFKADEHNHEAWSGFHAVHTMFVVT-EATGIGDDTFAAIEGNL--QGDS 222

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH--------------- 266
           R  ++  N  +  G+           W +Y++++ T   I S                  
Sbjct: 223 RILLVF-NPNKTVGYAAKSQKGDR--WHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKL 279

Query: 267 EGIISRYGLDS------------------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
           E    +   D                   D+ R ++LG FP+ + +  IP  ++EEA  R
Sbjct: 280 ENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHER 339

Query: 309 EAIDDLYAPL-----IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                   PL     I+G D+AG G D T  V RR N +      
Sbjct: 340 WKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTH 384


>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 500

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 117/347 (33%), Gaps = 69/347 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106
            +  + + A        V  S       A+++G   GK  + A   L  +   P      
Sbjct: 18  AFASDVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWDDDG 77

Query: 107 ----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  I   A S+ Q++N +  EV +                          L+   +
Sbjct: 78  NLIRNTKIALSAPSQRQVENIMTPEVRRLFRNAGILP---------------GRLVANDI 122

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
             D + Y +T      +  + + G H  + M V   EASG  + I  +I G       N 
Sbjct: 123 RTDYEEYFLTGFKADNKNQEVWSGFHAANVMFVIT-EASGVSETIFSAIEGNLQG---NS 178

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS-----------GFHEGIIS 271
             ++  N     G+  +        + ++++D+     + +            + E  + 
Sbjct: 179 RLLLVFNPNITTGYAANAMKSDR--FAKFRLDSLNATNVTAKREIIPGQVNYEWVEDKVK 236

Query: 272 RY-----------GLD-----------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +           G             +D+ RI++ G FP+   +  IP+ +IE A  R 
Sbjct: 237 HWCTPITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRW 296

Query: 310 AIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNII--EHIFDWSAK 351
             +  Y P     +G D+AG G D +V   R GN +    +F  + K
Sbjct: 297 QENHPYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVFQSAGK 343


>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
 gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
          Length = 513

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 108/335 (32%), Gaps = 64/335 (19%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------- 106
            + + A        +  S       A+++G   GK  + A   L  +   P         
Sbjct: 27  RDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKGVLV 86

Query: 107 -GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               +   A +  Q+KN +  E+ + +     +  F               L+   +  D
Sbjct: 87  GNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCCPG----------RLVADDIRTD 136

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
            + + +T     +   +++ G H  + M V   EASG  +I+  +I G       N   +
Sbjct: 137 YEEWFLTGFKADDNATESWSGFHAANTMFVIT-EASGISEIVYNAIEGNLQG---NSRML 192

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE------------------ 267
           +  N     G+           + ++++ +   E +                        
Sbjct: 193 IVFNPNITTGYAARAMKSDR--FAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVINWC 250

Query: 268 ---------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                              +    +D+ R+++LG FP+   +  IP+ +IE A       
Sbjct: 251 SPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQEL 310

Query: 313 D-----LYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
                       +G D+AG G D +V+  R GN +
Sbjct: 311 QASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYV 345


>gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
 gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
          Length = 535

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 113/327 (34%), Gaps = 48/327 (14%)

Query: 47  HFSQPHRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           +  +P RW  + +  V +      + N+     K A+ +    GK+ + A  +   + T 
Sbjct: 52  YRDEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDTH 111

Query: 106 PG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           P      I  A +  Q++  LW E+ +   +                +     + +    
Sbjct: 112 PPGSAFAITTAPTFPQVRAILWREIRRLSRL---------------MNPPLGRVNQTEWL 156

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
           ID        +   +     F G H  + + V  DEA G P  +  +     T  N N  
Sbjct: 157 IDDDLVAFGRKPA-DHDEGGFQGIHAQYPLVVL-DEAGGIPQQLWIAADSIAT--NENAR 212

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--------------GIDSGFHEGI 269
            +   N      +F  +  +P   W    I                     +   + E  
Sbjct: 213 ILAIGNPDDPTSYFAQVCELP--SWHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEEK 270

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-----PLIMGCDI 324
              +G D+ V   ++L QFP+      I     + A  R   D+ +      P+ +G D+
Sbjct: 271 RREWGEDNPVYISKVLAQFPKDVAWKVI--KASDVAKRRIGRDEPWPASKLRPVCLGVDV 328

Query: 325 AGEGGDKTVVVFRRGNIIEHIFDWSAK 351
            GEG D TVV  RRG  ++   +W A+
Sbjct: 329 -GEGRDWTVVRERRG--VQAGREWQAR 352


>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
          Length = 459

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 107/314 (34%), Gaps = 69/314 (21%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129
            A+++G   GK  + A   +  +   P             I   A +  Q  N +  EV+
Sbjct: 2   VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           +                          +L   +  ++  + +T    S++  + + G H 
Sbjct: 62  RLFRNASVLP---------------GRMLSDGIRTNNAEWFLTAFKASDDNTEAWSGFHA 106

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
            + M V   EASG  +    +I G       N   ++  N     G+           +K
Sbjct: 107 VNTMFVVT-EASGVSETTFNAIEGNLQG---NSRLLLVFNPNVTTGYAAKAMKSSR--FK 160

Query: 250 RYQIDTRTVEGI-----------DSGFHEGIISRY-----------GLD----------- 276
           ++++++   E +           D  + +  +  +           G             
Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----IMGCDIAGEGGDK 331
           +D+ RI++LG FP+   +  IP  ++E A  R    +    +      +G D+AG G D 
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280

Query: 332 TVVVFRRGNIIEHI 345
           +  V R GN +  I
Sbjct: 281 SCFVLRYGNYVPEI 294


>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
 gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 549

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 37/287 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPHR 138
            A+++G G GKT L A ++LW I+  P      +A    Q +  +W EV++ W       
Sbjct: 70  VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVARHWPRFQACF 129

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT-YSEERPDTFVGPHNTHGMAVFN 197
              E+ +L +    W  +            + IT      EE      G H    + +  
Sbjct: 130 PEAELTTLRIRMEPWRGDAWGA--------WGITAAPKAGEESSSAVQGLHAK-RLLILV 180

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQID 254
           DE  G P  +  +++   T            N        G F +      +     +I 
Sbjct: 181 DETPGVPQPVMTALVNTATGEENVIAAF--GNPDYQADPLGQFAET-----KRVTAIRIS 233

Query: 255 TRTVEGI-----------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
                 +                     +YG++S V +  + G  P+Q  +  I   +  
Sbjct: 234 ALDHPNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSASALIHLAWCV 293

Query: 304 EAMSREAIDDLYA----PLIMGCDIAG-EGGDKTVVVFRRGNIIEHI 345
            A  R       A    P  +G D+A  E GDK  V   +G  +  +
Sbjct: 294 AAADRAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSV 340


>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 301

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQ----LEFME 60
           I  D  L Q +    +     L+F  ++ R   WG +G PL +   P  WQ    LE  E
Sbjct: 9   IEYDTALLQNVLSPAIAGN-PLAFTKYMYR---WGEEGTPLANCKGPRAWQTEVFLELAE 64

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            ++ +  +        +FK AI++ RGIGKT L AW+  W +STR G +++  ANS+ Q 
Sbjct: 65  FIEKNKEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQC 124

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQS----LSLHPSGWYAELLEQSM 162
           K T +AE+ +W S+  + H+FE       L+   S W AE + +++
Sbjct: 125 KTTSFAEIRRWHSLAKNAHFFEANIAEALLAGGCSPWQAEPVAKTL 170


>gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
 gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
          Length = 516

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 104/274 (37%), Gaps = 26/274 (9%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAE 127
            K ++ +G G GKT     + LW +   P          G +    A +  Q+ + +W E
Sbjct: 48  AKVSVVSGTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKE 107

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           ++  +  +         +  +        +++         + IT     + +  +  G 
Sbjct: 108 ITDAVQAMRANRATAWLAEYIVVQAERVYIIDYKA-----TWFITKFAMQQGQSVSIAGK 162

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---- 243
           H  + + +  DEA+G  D   + I G  T+       ++ S   +  G+FY+  +     
Sbjct: 163 HRFYQLIII-DEAAGVSDEHYEVINGTQTQGGNRT--LLASQGVKQGGFFYETHHKLNKE 219

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
              +W      +     + + + E +  +  G ++   R+ +LG+F + E  N +    I
Sbjct: 220 NGGNWTALCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLTRAQI 279

Query: 303 EEAMSREAIDDLYAP--LIMGCDI-AGEGGDKTV 333
           E  +    I +   P   ++  D+ AGE  D +V
Sbjct: 280 EPRIDTLPIIEKGEPFGWLLLVDVGAGEYRDDSV 313


>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 430

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 114/301 (37%), Gaps = 37/301 (12%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            ++ NP      ++ GR +G T  +A  ++  +    G +++ +   +  L+N      +
Sbjct: 17  FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72

Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
             L  LP   + + +Q   L  +G                        S ER +   G  
Sbjct: 73  PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113

Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             + + + N+       S    +   +I     + NP    I+    +  N  FY++   
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170

Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
            L D  WK +Q  +     +     + +I    G DS+V + EI G+F            
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSSAELFALT 230

Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
            IE AMS+ +  I+ +    I G D+A  G DK+V+  R+G I++ I  +S     E   
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQLGTMELAN 290

Query: 359 E 359
            
Sbjct: 291 R 291


>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
           305]
          Length = 430

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 113/301 (37%), Gaps = 37/301 (12%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            ++ NP      ++ GR +G T  +A  ++  +    G +++ +   +  L+N      +
Sbjct: 17  FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72

Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
             L  LP   + + +Q   L  +G                        S ER +   G  
Sbjct: 73  PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113

Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             + + + N+       S    +   +I     + NP    I+    +  N  FY++   
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170

Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
            L D  WK +Q  +     +     + +I    G  S+V + EI G+F           +
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLS 230

Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
            IE AMS+ +  I+ +    I G D+A  G DK+ +  R+G +I  I  +S     E   
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELAN 290

Query: 359 E 359
           +
Sbjct: 291 K 291


>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
 gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
          Length = 430

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 113/301 (37%), Gaps = 37/301 (12%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            ++ NP      ++ GR +G T  +A  ++  +    G +++ +   +  L+N      +
Sbjct: 17  FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72

Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
             L  LP   + + +Q   L  +G                        S ER +   G  
Sbjct: 73  PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113

Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             + + + N+       S    +   +I     + NP    I+    +  N  FY++   
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170

Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
            L D  WK +Q  +     +     + +I    G  S+V + EI G+F           +
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLS 230

Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
            IE AMS+ +  I+ +    I G D+A  G DK+ +  R+G +I  I  +S     E   
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELAN 290

Query: 359 E 359
           +
Sbjct: 291 K 291


>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 430

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 33/265 (12%)

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGI 164
            G +++ +   +  L+N      +  L  LP   + + +Q   L  +G            
Sbjct: 49  EGKNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIING------------ 96

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELN 219
                       S ER +   G    + + + N+      D     +   SI     + N
Sbjct: 97  ------AVLHMRSAERSENIEGF--AYDLVILNEAGIILKDSKGGYLWYNSIRPMLLD-N 147

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLD 276
           P    I+    +  N  FY++    L D  WK +Q  +     +     + +I    G  
Sbjct: 148 PKSRAIIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGES 206

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGEGGDKTVV 334
           SDV R EI G+F           + IE AMS+ +          I G D+A  G DK+V+
Sbjct: 207 SDVVRQEIYGEFIDSSSAELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVL 266

Query: 335 VFRRGNIIEHIFDWSAKLIQETNQE 359
             R+G +I+ +  +S     E   +
Sbjct: 267 AKRKGFVIDELKKYSQLGTIELANK 291


>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 472

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 99/349 (28%), Gaps = 63/349 (18%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLIS 103
           L +   P  +  E +  V       +  S  T  ++  + A   +GKT L   ++ W   
Sbjct: 2   LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           +     ++  A ++ Q+++ LW EV                          A        
Sbjct: 62  SFDPGLVLTTAPTDRQVRDLLWKEVRMQRR-------------------GRAGFTGPKSP 102

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                       ++ +  D+F G H+ H      DEA G   +  ++    F E      
Sbjct: 103 RLESTPDHFAHGFTAKDGDSFQGHHSPH-TLFIFDEAVGVASVFWETAESMFNEGGA--- 158

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG----------------------- 260
           W+   N    +   Y         W    +                              
Sbjct: 159 WLAIFNPTDTSSQAY--AEELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDT 216

Query: 261 --------IDSGFHEG-----IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   +     +          +     +A   +LG++P Q  NN       + A S
Sbjct: 217 LLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVAES 276

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
              +     P  +GCD+A  G D T +  RRG    +    +     ET
Sbjct: 277 L-LLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVET 324


>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 272

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
                    W   QID+RTVEG +          YG +SD  ++ + G FP      FI 
Sbjct: 5   KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64

Query: 299 HNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +  A  R    +   YAP I+  D A EG D+ V+  R+G     +   +   
Sbjct: 65  ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKND 120


>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
 gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
          Length = 479

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 115/313 (36%), Gaps = 35/313 (11%)

Query: 42  GKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMM 98
           G P  H  +  P  + +  ++       + +  S  +      +   G GKT+ +   + 
Sbjct: 12  GTPAPHAEKLNPITFAVAVLKLRIYSWQAKIMASVWSGKPTVAATPNGAGKTSVIIVALA 71

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L L+   PG +++  + +   + + ++A ++   +       ++     ++         
Sbjct: 72  LTLLHEFPGATVVLTSATYRAVCDQIFASLAVHQAKFSA---WKWNDTEIN--------- 119

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFT 216
                 D +   I    ++ +R   F G H      + +  DEA    D I  +      
Sbjct: 120 ------DGQGGRII--GFATDRGGRFEGFHAYPGRPLLIILDEAKSIADDIFVAA----- 166

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
           +       +  S+   L G F+D F+     + ++Q        I   F E + ++YG D
Sbjct: 167 DRCQPTMLLYISSWGGLFGRFHDAFSQDR--FAQFQAGIADCPHITPEFIEAMRAQYGED 224

Query: 277 SDVARIEILGQFPQQEVNNF-IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           SD+ R  ILGQ P+     F +P    E   S   +       +  CD A    D+ V+ 
Sbjct: 225 SDIYRSMILGQRPKGNETGFVVPFVDYERCESNPPVWQEGTKQVF-CDFAET-SDECVIA 282

Query: 336 FRRGNIIEHIFDW 348
            R GN +  +  W
Sbjct: 283 KRDGNRLSIVDAW 295


>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 133

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  AN++TQL+     EV KW  +    HWF+ QS S+                 +K + 
Sbjct: 1   MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASI----------AARDKEHAKTWR 50

Query: 171 ITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                +SE   + F G HN    + +  DEAS   D + +   G  T+      WI   N
Sbjct: 51  ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110

Query: 230 TRRLNG 235
             R  G
Sbjct: 111 PTRNIG 116


>gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246]
          Length = 519

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 103/356 (28%), Gaps = 68/356 (19%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTR 105
           + + P  +  + ++         +  +     ++  + A   +GK+ L   ++ W   TR
Sbjct: 30  YRTDPAGYARDILKVKWWAKQVEIAEALCKPPYRVLVKASHSVGKSHLAGGLVNWWYDTR 89

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                +  A ++ Q+K+ LW EV +     P     +M  L   P+ +            
Sbjct: 90  FPGVCLTTAPTDRQVKDVLWKEVRRQRRKRPGFVGPKMPRLESDPTHF------------ 137

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                     ++     +F G H    +    DEA G      ++             W+
Sbjct: 138 -------AHGFTARDATSFQGQHEASILL-IFDEAVGIDGDFWEAAESMCQGAEYG--WL 187

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG---------------FHEGII 270
              N        Y +       W    I       I +                +    +
Sbjct: 188 AIFNPTDTTSRAY-LEEQAGSRWTVIDIPATEHPNIAAELVARPPEYPSAVRLNWLRDRL 246

Query: 271 SRYGL------------------DSDVAR-------IEILGQFPQQEVNNFIPHNYIEEA 305
            ++                     S             +L ++P      +    +   +
Sbjct: 247 EQWAERIEPGDATPTDIQFPNPDGSPQWWRPGPLADARLLARWPASGCGVWSDPVW--RS 304

Query: 306 MSREAIDDLYAPLI--MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           + R A D +    +  +GCD+A  G D T +  R GN+  H    +    + T + 
Sbjct: 305 VERAAPDPVPERWLPQIGCDVARFGEDWTELHVRCGNVSLHHEAHNGWDTKRTTER 360


>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
 gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
          Length = 543

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 112/375 (29%), Gaps = 73/375 (19%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           ++   P  +    +     +  + +  S        + A  G GK+ + + ++++ +   
Sbjct: 28  QYADDPVGFFKNELGIELTNEQTIIAESVRDRPITNVKAAHGTGKSFIASLLVIYFLFC- 86

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G   I  A SE Q+K  LWAE+ K   +   +       + L               + 
Sbjct: 87  VGGVAITTAPSEDQVKWILWAELRKIHGLHKTKLGGRCDIMQL---------------LF 131

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
           S+       T  +   ++F G H    +    DEA G    I+   +   T  +     +
Sbjct: 132 SETVYAFGITSRDYSENSFQGQHRQKQLL-IEDEADGITPQIDNGFIACLTGSD--NRGL 188

Query: 226 MTSNTRRLNGWFYD--------------IFN----------------------------- 242
              N       F                                                
Sbjct: 189 RIGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSWAYELCADGVYRLKPEVAEHIINEDG 248

Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P ++W       R    I   + E +       S   +  ++G++ +   +  I   
Sbjct: 249 EIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFETSAYWKGRVMGEYAEDAADGIILLT 308

Query: 301 YIEEAMSREAIDDLYA-------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW-SAKL 352
            +++A S    +  Y        P  +G D+ G+GGD   +   RG ++  +    +   
Sbjct: 309 LLKQARSLYDQNPQYWDAIAKRYPWRLGLDV-GDGGDPHALALLRGPVLYEVQIHPTKGD 367

Query: 353 IQETNQEGCPVGSSI 367
           + +T +      S I
Sbjct: 368 LLDTERAADIAASQI 382


>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
 gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
          Length = 872

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 93/287 (32%), Gaps = 32/287 (11%)

Query: 91  TTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           T L   ++ W +S  P    S++  A    Q+   ++  +    ++   R     Q L  
Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIERE----QPLIG 479

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + W      Q      K   +  R        +F G H+ H +AV  DEA G P+ + 
Sbjct: 480 EITKW---PYWQVGAPLDKKLVMPKRPADGNLISSFQGIHDGH-VAVVLDEAGGLPEDLY 535

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFH 266
                  T  +     I   N  + N  F++ F    +   W R+ I             
Sbjct: 536 IGANAVTTNFHARILAI--GNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTGEKI 593

Query: 267 -------EGIISRYGLDS-----------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                  E +       S            V   ++ G FP+ +   F   + I    S 
Sbjct: 594 YEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRGYST 653

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           E   +      MG DI+ +G D++V     G  I    +W+     E
Sbjct: 654 EIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAE 700


>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
 gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
           5631]
          Length = 435

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 42/272 (15%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + AGR  GKT   A   ++   T PG     IA S  Q  N ++ ++ ++LS      
Sbjct: 42  ITVVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIVQFLSKSI--- 97

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                   ++ + ++  + +    I ++         S  +P+   G H  H   +  DE
Sbjct: 98  -LGCMIRRIYKTPFHHIIFKNDSVIHAR---------SASKPEFLRG-HKAHR--IILDE 144

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI----PLEDWKRYQID 254
           A+  PD +I+  I     + N +  WI        N  FYD +         D+  Y+  
Sbjct: 145 AAFIPDDVISNIIEPMLADYNGS--WIKIGTPFGKN-HFYDTYLKGQSPDFPDYSSYRFP 201

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----I------PHNYIEE 304
           +     I   F E     YG +S + R E L +F + +   F    I          I+ 
Sbjct: 202 STVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVEDQNAVFRWADIQKNVDNSIELIDS 261

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A      +++    ++GCD+A    D TV+V 
Sbjct: 262 A------ENVSKQYVIGCDLAKY-QDYTVIVV 286


>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
          Length = 414

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 30/214 (14%)

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            ++  G  ++      R   ++   TF G        V  DEA G P  +        T 
Sbjct: 12  YKKMDGSGNEAIAFGKRPTDQDIVSTFQGT-RKLRTFVALDEAGGVPPELFTGAEAVMTG 70

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVE---------------- 259
            +     I   N       F+ IF +P  +++W  + I    +                 
Sbjct: 71  QDSKIVAI--GNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQE 128

Query: 260 -----GIDSGFHEGIISRY---GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                     + +     +   G        ++LG+FP +  N F P   I+       I
Sbjct: 129 RMLKGLTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRGND-TTI 187

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           D     +IMG D+A  G D +VV   +G  +   
Sbjct: 188 DKPEKGIIMGVDLARMGDDDSVVYTNQGGRVRLF 221


>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 442

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 25/249 (10%)

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A    Q K   W  +  + + +P R         ++ S  Y EL  +          I 
Sbjct: 63  VAPYRNQAKRVAWEYLKYYTNPIPGR--------VVNESELYIELPTRHARSPGARLYII 114

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTR 231
                 + PD   G +      V  DE +     +    I       +   + +     +
Sbjct: 115 G----ADHPDALRGIYLDG---VILDEYADIKPELWGGVIRPAL--ADRQGWAVFIGTPK 165

Query: 232 RLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             N  FY++         W      T     + +   + + ++        R E+L  F 
Sbjct: 166 GQN-QFYEMYQHAEKSAGWYSCIYRTDETGVLPAEELKDMQAQMTEM--EIRQELLCDFT 222

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
               +  IP + +  A +R   DD     P+I+G D+A  G D+TV+  R+G  ++ +  
Sbjct: 223 ASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRT 282

Query: 348 WSAKLIQET 356
           ++     ET
Sbjct: 283 FTGLSTMET 291


>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
           IH1]
 gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
           IH1]
          Length = 445

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 29/261 (11%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++AGR  GK+ L A+++++L ST+       IA      +  ++ E+ K++      +  
Sbjct: 56  VAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYANAR-IIFRELKKYIEKS---NVL 111

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                 +  S + A   +    ID +         S + P +  G        V  DEA+
Sbjct: 112 SRLVKRMVESPYMAIEFKTGCTIDFR---------SADNPTSIRG---ESYHLVILDEAA 159

Query: 202 GTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRT 257
              D + K  I     + +     I T N       FY+ F            ++  T T
Sbjct: 160 FIKDDVVKYVIKPLLLDYDAPLIEISTPNGH---NHFYESFLMGKNKQNRHISFRFPTWT 216

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID----D 313
              +     E I    G DS V + E   +F            YI++ +          +
Sbjct: 217 NPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNE-AVFNWEYIQQCIDGTIKLLKSGE 275

Query: 314 LYAPLIMGCDIAGEGGDKTVV 334
                +MG D+A    D TV+
Sbjct: 276 SGHQYVMGVDLAKF-EDYTVI 295


>gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
           sp. Nb-311A]
 gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
           sp. Nb-311A]
          Length = 250

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 38/262 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E +            N    +  C+  +    GKTT+ A M L       G  +
Sbjct: 24  PDPWQAELLR----------LNPKRALLLCSRQS----GKTTVTALMALHRAIYETGALV 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S  Q    L  ++ K    L            +  +    EL   S         
Sbjct: 70  VIVSPSNRQSGEML-RQIKKLHGSLKGAPEL------VGDAVLKVELANGS--------R 114

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           I     +E+      G        V  DEAS   D +  ++              +T   
Sbjct: 115 IIALPGTEKTIRGIAG-----VSLVIIDEASRVDDELLAAVRPMLATRADGSLIALT-TP 168

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
               G+FY+ ++   + W R ++       I   F    +   G        E    F  
Sbjct: 169 AGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLGP--ARYSEEYELAFVD 226

Query: 291 QEVNNFIPHNYIEEAMSREAID 312
            +  +  P   IE A + E   
Sbjct: 227 -DAASAFPTAVIERAFTTEVEP 247


>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
           M7]
 gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
           M7]
          Length = 437

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 91/263 (34%), Gaps = 33/263 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++AGR  GK+ L  +++++L  T+       IA      +  ++ E+  ++         
Sbjct: 50  VAAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIAPYYANAR-IIFKELRTYIEKNKT---L 105

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +     +  S +     +    ID +         S + P +  G        V  DEA+
Sbjct: 106 QKLVKRITESPYMVIEFKTGCIIDFR---------SADNPTSIRG---ESYHLVILDEAA 153

Query: 202 GTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-----NIPLEDWKRYQIDT 255
              D + K  I     + +     I T N       FY+ F              ++  T
Sbjct: 154 FIKDDVVKYVIKPLLIDYDAPLIEISTPNGH---NHFYESFLMGENRQNRHI--SFRFPT 208

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--- 312
            +   +     E I   +G DS V + E   +F   + +      YI++ +         
Sbjct: 209 WSNPFLPKSVIEEIKREFGEDSLVWKQEFCAEFID-DQDAVFKWEYIQQCIDSNIELLTV 267

Query: 313 -DLYAPLIMGCDIAGEGGDKTVV 334
            +     +MG D+A    D TV+
Sbjct: 268 GEKGHRYVMGVDLAKY-QDYTVI 289


>gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium
           etli CNPAF512]
          Length = 248

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 42/264 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ   + A          N   ++  C+  +    GK+T+ A++++      P   
Sbjct: 22  EPDPWQANLLRA----------NPRRSMLLCSRQS----GKSTVAAFLVIQTALFVPAAQ 67

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ ++ ++ Q  N L+  +  +LS LP       +S                    S   
Sbjct: 68  IVVVSPTQRQ-SNELFRTIVGFLSRLPGAPRPTAESKQGTE--------------LSNGA 112

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +     +E+      G        V  DEA+   D +  ++        P+   +  + 
Sbjct: 113 RVLSLPGTEKTIRGIAGVD-----LVVMDEAARVEDALLTAVRPMMATK-PDARLVALTT 166

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG--LDSDVARIEILGQ 287
                GWFY+ +      W+R ++       I   F +  +   G    S+   +    +
Sbjct: 167 PAGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALGAIKFSEEYGL----E 222

Query: 288 FPQQEVNNFIPHNYIEEAMSREAI 311
           F   E     P   IE A ++E  
Sbjct: 223 FHDPEE-AVFPLAIIEAAFTQEVR 245


>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
          Length = 249

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 76/257 (29%), Gaps = 40/257 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +                   +  +   R +GKTT  A+  L      PG  +
Sbjct: 24  PELWQERLLRT--------------QEARVLVLCARQVGKTTATAYKALHAAMFNPGRDV 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S+ Q               +  R     + +   P    +   E  +   S    
Sbjct: 70  LIVSPSQRQ------------SDEMLRRVASLYRGMKEAPKLSRSNTSEMGLSNGS---R 114

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     SE     F G        +  DEAS   D +  S+L            +  S  
Sbjct: 115 VVSLPGSEGGIRGFAG-----VKLLILDEASRVDDDVFASVLPMVASDGQ---MVALSTP 166

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
               GWF+++       W+R+++     +         + +  G  S V   + L +F  
Sbjct: 167 WGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEFGD 224

Query: 291 QEVNNFIPHNYIEEAMS 307
            +         +  A S
Sbjct: 225 TDS-QLFSTENVRAAFS 240


>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
 gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
          Length = 330

 Score = 76.7 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------WK 249
           DE +     +  + +     +   +  +I     +  N  F +++   +         W 
Sbjct: 2   DEVAQMKPEVWGEVVQPALADRRGSAVFI--GTPKGAN-LFAELYQRGMAAQAQGDAAWC 58

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
                  + + + +   E +     L  +  R E+L  F     +  IP   + EA +R+
Sbjct: 59  ALSYPVTSTDVLPAEDVERLRRE--LSDNAFRQEMLCDFTASSDDILIPLPDVLEAEARQ 116

Query: 310 AI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
               D    P+I+G D+A  G D +V+V R+G  ++           +
Sbjct: 117 LAWDDVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQ 164


>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 422

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 94/295 (31%), Gaps = 42/295 (14%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           S+P   QL  +     H      + +   F+ A + GR  GKT   A  +       PG 
Sbjct: 7   SEPTSKQLR-LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGA 64

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
               +A +  Q                       + +  +    ++  + + +       
Sbjct: 65  MTWWVAPTYRQ----------------------TLTAYRIITRNFHGAIEKATTTHMRIE 102

Query: 169 YTITCRT--YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWI 225
           +     T   S E  D   G        +  DEA+  P    ++ L    ++       +
Sbjct: 103 WKSGSITEFRSTENFDALRG---EGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIV 159

Query: 226 MTSNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
             S  +  N WFY ++    +    +W+ ++  T     I     E   +   L SDV R
Sbjct: 160 --STPKGRN-WFYHVWARGQDPAFPEWESFRFPTLANPYIPPEEVEEARTT--LPSDVFR 214

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            E   +F +     F      +    +E         ++G D+A    D +V+V 
Sbjct: 215 QEYEAEFLEDSAGVF--RGIRDCISGQEEEPQPGRRYVVGWDVAKH-QDFSVLVV 266


>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
 gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
          Length = 505

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 87/311 (27%), Gaps = 57/311 (18%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E  EA+D          +       I+ GR  GKT +   +     S   G S++ +A
Sbjct: 65  QEEIAEAID----------SEMYDVITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVA 114

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
               Q K  ++ ++ + L                     +  +   +             
Sbjct: 115 PVYNQAKT-MYKKIKRGLESNKESRQLVKPKKEGFKESPFPLITFYNGSTIEFK------ 167

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRL 233
             S E PD      +     +  DEA+   D I    +     +       +  S     
Sbjct: 168 --SAETPDNLR---SEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWGT 220

Query: 234 NGWFYDIFNI----------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
              FYD +                      +K ++  +     +   F  G     G D+
Sbjct: 221 GNHFYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGEDN 280

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYA---PLIMGCD 323
            V   E   +F  ++        +++  +S              + D        ++G D
Sbjct: 281 PVWLQEYCAEF-IEDDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLD 339

Query: 324 IAGEGGDKTVV 334
           +A    D TV 
Sbjct: 340 LAKHN-DYTVF 349


>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 260

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 29/261 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            W    +        + V ++     +  ++  R  GK+T+ A   +       G   I 
Sbjct: 25  EWARRALGFEADAAQARVLDTRSK--RVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +  Q    +                   +  +   SG    +        S  +   
Sbjct: 83  VTPTARQTGEFV-------------------RKAATFASGLEMRVKGDGHNEMSLAFPNG 123

Query: 173 CRTYSEERPDT-FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            R       +    G        +  DEAS   D +  ++      ++    W+M S   
Sbjct: 124 SRIVGLPGTEATVRGFSA--VTLLLIDEASRVGDDLYMAMRPML-AVSAGTLWLM-STPH 179

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
              G+FY+ +    E W+R  +         + + E      G    + R E   +F  +
Sbjct: 180 GKRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGER--IYRQEYCCEF-GE 236

Query: 292 EVNNFIPHNYIEEAMSREAID 312
                   + IE A S E   
Sbjct: 237 TSGAVFDRDLIEAAFSDEVTP 257


>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
           6P18H1]
 gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
           6P18H1]
          Length = 452

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++    T+P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDVLIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI--PHNYIEEAMS--REAIDDLYAPL 318
               E ++     D ++ R    G+ P  + +  I  P  +I+ A+   ++         
Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGE-PVADSDKVIIKPL-WIDAAVDAHKKLGFVAAGRK 243

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           I+G D+A EG D     F  G+++  + +W  + +
Sbjct: 244 IIGFDVADEGSDANANAFVHGSVVLRMDEWHGEDV 278


>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
 gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
          Length = 452

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 28/275 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++    T+P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDVLIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI--PHNYIEEAMS--REAIDDLYAPL 318
               E +      D ++ R    G+ P  + +  I  P  +I+ A+   ++         
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDKVIIKPL-WIDAAVDAHKKLGFVAAGRK 243

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           I+G D+A EG D     F  G+++  + +W  + +
Sbjct: 244 IIGFDVADEGSDANANAFVHGSVVLRMDEWRGEDV 278


>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
 gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
          Length = 330

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 13/170 (7%)

Query: 195 VFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGW--FYD----IFNIPLED 247
           V  DE +     +  + I     +      +I     + +N +   YD    + +    D
Sbjct: 6   VVIDEVAQIKPTLWGEVIRPALADRKGWAAFI--GTPKGINLFSQLYDQALNLMSKGDPD 63

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           W            ID      +        +  R E L  F   + N  IP + I  A +
Sbjct: 64  WIAMLYSVEQTHVIDEKELAALKVEMSE--NEFRQEFLCDFSAAQDNGLIPIDDIRAAAN 121

Query: 308 REAIDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           +   +  Y  APLI G D+A  G D +V+  RRG +              
Sbjct: 122 KFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMA 171


>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
           PD1222]
 gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
           denitrificans PD1222]
          Length = 441

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 87/266 (32%), Gaps = 34/266 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  M+    T PG+S IC+             +V K L     +   E 
Sbjct: 26  GGRGSGKSWDRAMHMIVRHLTEPGLSSICL------------RDVQKSLDQSVFKLLVE- 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  L  +     +    +     +  I     +E   +          +A + + A+  
Sbjct: 73  TAARLGVAEAIRPVESDRIIRTPGNGIIAFNGMNEFNAENIKSL-EGFDIAWWEEAATAG 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR----------RLNGWFYDIFNIPLEDWKRYQI 253
              +   +     +      W  T N R          R +  F D   +   +W     
Sbjct: 132 QGPL-DMLRPTLRKPGSQ-IWF-TYNPRLRSDPVDVMMRQDARFADSRTVVEANW----- 183

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
             R          E  +     D    R    G +  +    FI    + EAM+R+    
Sbjct: 184 --RDNPFRGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRG 339
           +   L++G D+A  G D++V+  RRG
Sbjct: 242 IGDELVLGVDVARFGDDRSVIWARRG 267


>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
 gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
           BI429]
          Length = 421

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 39/264 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I AGR  GKT   A  + +  +  P   +I    S  Q K                 +  
Sbjct: 39  ICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPSLDQAKIY---------------YDL 83

Query: 142 EMQSLSLHPSGWYAELLEQS--MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +++ L P   + +  + S    I  K+ +      +        G        V   E
Sbjct: 84  LTEAIELSPLKGFVKKTKDSPFPTIYLKNGSSITVRSTAHNGKYLRG---RKVNLVVLTE 140

Query: 200 ASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR---YQIDT 255
           A+   D + +  I     +L+     I+ S    +N +FY+ +   L++ K    +    
Sbjct: 141 AAFIKDSVYEQVITPM--KLDTGAPVILESTPNGMN-YFYEEYQRGLKNKKHTISFHATV 197

Query: 256 RTVEGIDSGFHEGIISR---YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                +D    E   ++   Y     V R E L +F   +   F P   + EA      +
Sbjct: 198 YDNPFLDQEEIENAKAKTPDY-----VWRQEYLAEFVD-DDTVFFPWKILVEAFEDYKPE 251

Query: 313 DLYAPLI--MGCDIAGEGGDKTVV 334
                    +G D+A    D TV+
Sbjct: 252 GYKDGRKYSIGVDLAKY-RDYTVI 274


>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
 gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 255

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 40/260 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   + +          +    +  CA  +    GKTT +A + L          +
Sbjct: 8   PDPWQEALLTS----------DWERALLNCARQS----GKTTASAALALETALEATDSLV 53

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A +  Q K  L   V             + QS          E   + + +  K  T
Sbjct: 54  LILAPARRQSKEFL-RSVRSLYRDAAPDGGLDKQS----ELRLRLENESRIIALPGKEGT 108

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +  R Y+ +               V  DEA+  PD    +              +  S  
Sbjct: 109 V--RGYTAD--------------LVIADEAARVPDAAYVATRPMLAVTGGRFVGL--STP 150

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
               GWFY+ +  P ++W++ ++  +    +   F E      G      R E + +F  
Sbjct: 151 AGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMGDWQ--FRSEYMCEFTD 208

Query: 291 QEVNNFIPHNYIEEAMSREA 310
            E +      +IE +++ E 
Sbjct: 209 TE-DQLFATEHIESSLTSEV 227


>gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
 gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
          Length = 568

 Score = 69.4 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 54/225 (24%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ + +E++           + TI +  +    G GK                   II
Sbjct: 57  DDWQWDILESL----------FDLTIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              +S    +   + EV KW   +  +   ++ +  +  +  ++  L             
Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDNNQHSISL------------- 153

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSN 229
                + +  + F G H+ H +  + DEA+     D    +           + ++  SN
Sbjct: 154 ----ANPQHIEGFRGAHSPH-VFFWFDEATAPNLEDKYKLANTQA-------KKFLALSN 201

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
              L+G F D F                   ++    + II +YG
Sbjct: 202 PSTLSGTFRDSF-----------------PVVNPDKTQTIIDQYG 229


>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
           11109]
          Length = 466

 Score = 69.4 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 90/293 (30%), Gaps = 50/293 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ +F+          V+     +  C+  +    GK+T  A + L      PG  I
Sbjct: 27  PDPWQQDFL----------VSRPEQALLLCSRQS----GKSTSAAALALHEALFHPGALI 72

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S  Q    L+ + +     LPH                               + 
Sbjct: 73  LLLSPSLRQ-SQELFRKAAGLYQRLPHAP------------------AACRTSALRLEFD 113

Query: 171 ITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
              R  S   + +T  G      + +  DEA+  PD +  ++                S 
Sbjct: 114 HGSRIISLPGQEETIRGFSEVRLLVI--DEAALVPDELYYAVRPML--AVSRGRLTALST 169

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                GWFY  +    + W+RY I       I + F         L +   R E   +F 
Sbjct: 170 PAGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFLAAEQRS--LPAAWFRAEYFCEF- 226

Query: 290 QQEVNNFIPHNYIEEAMSREAID--------DLYAPLIMGCDIAGEGGDKTVV 334
            +  N   P + ++ A   +                  +G D+ G+  D + +
Sbjct: 227 GEAANQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDL-GQSQDYSAL 278


>gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293]
 gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 295

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 78/253 (30%), Gaps = 45/253 (17%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+ A           G  II ++ +  Q K            ++     F     S 
Sbjct: 57  GKSTVIAAKAAHKAKFFSGSLIILVSPALRQSK-----------ELMRKVEDFIALDKSF 105

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
            P+    E   Q          I     SE+      G        +  DEAS  PD + 
Sbjct: 106 PPAS---EEDNQLTKEFKNRSRIVALPGSEKTIRGLSG-----PTLIIIDEASRIPDELY 157

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-- 266
           K+I       +     ++ +      G FYD ++     W + ++  R + G        
Sbjct: 158 KAIRPMMAGADTE--LVLMTTPFGKRGVFYDAWSRSK-RWTKIEVVGRDILGRFPNEQVY 214

Query: 267 ------EGIISRYGLDSDV--------------ARIEILGQFPQQEVNNFIPHNYIEEAM 306
                 +GI + Y     V               R E  G+F    +++      +  A+
Sbjct: 215 AQLRRKDGIKACYSPRHSVEFLGEELEEMGEWWYRQEYGGEFMDP-IDSVFNMEDVRAAI 273

Query: 307 SREAIDDLYAPLI 319
             +     +AP+I
Sbjct: 274 INDTPAISFAPII 286


>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 260

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 27/221 (12%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+T+ A   +    T+     I ++ +  Q    +                   +   
Sbjct: 58  WGKSTVTAARAVHEAVTKADSLTIAVSPTARQTGEFV-------------------RKAE 98

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVFNDEASGTPDI 206
                   ++        S  +    R       +    G        +  DEAS   D 
Sbjct: 99  AFAGMLKMKVKGDGSNEMSLAFPNGSRIVGLPGTEATVRGFSA--VALLLVDEASRVEDD 156

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           +  ++      ++    W+M S      G+FY+ +      W+R  +         + + 
Sbjct: 157 LYMAMRPML-AVSGGTLWLM-STPWGKRGFFYEAWANGGPTWERVSVKAEDCPRFGAEYL 214

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           E      G    + R E   +F +         + IE A S
Sbjct: 215 EEERRVMGER--IYRQEYCCEFGESSS-AVFDRDLIEAAFS 252


>gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
           BL225C]
 gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
           BL225C]
          Length = 408

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GKT + A  + W +     + +     SE+ +KN +W+ +    + +           S
Sbjct: 208 WGKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMA----------S 257

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                +       S    +       R  S +      G H  +   VF D+A G  +++
Sbjct: 258 SFKDLFDVSATRVSRKTAAPSCFAEYRLVSADNASAARGIHAVNN-FVFVDDADGVSEVV 316

Query: 208 NKSILGFFTELNPNRFWI--MTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
              ++    + NP    +  M +N   +       ++FN  L   +   +        D 
Sbjct: 317 IAYLMNIMIDPNPKLCLLSTMFANETPKLETVTEAELFNEALSSLRAM-VSGEV--RTDP 373

Query: 264 GFHEGIISRYGLDSDVARIE 283
            + E I  RY L++      
Sbjct: 374 VWLEAI--RYQLENAEYLAR 391


>gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
 gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
          Length = 602

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 101/366 (27%), Gaps = 83/366 (22%)

Query: 49  SQPHRWQLEFMEAVD----VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           +    W  + +E           + +        +  +    G+GK+ + A + +  ++ 
Sbjct: 22  AGDETWLEDAIEDYLGITVTGAQAQICRGIAANERLLVVTANGLGKSYILAAITIVWLTV 81

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R        + +E ++K T              +    +   +  P     +   + + I
Sbjct: 82  RYPACSFATSGTERKMKRTY------------CKPVENLHGDARVPLPGEYKSRPERIEI 129

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNR 222
           D +          ++  +   G H  + +A+  +EA        +  ++    T+     
Sbjct: 130 DGEPEHFFEAASPQDAGE-LEGVHAAYTLAII-EEADKKDVDAEVLDAMKSLVTDEQDRI 187

Query: 223 FWIMTSNTRRLNGWFY---DIFNIPLEDWKRYQIDTRTVEGIDSG--------------- 264
             I  +  +      Y   D  + P   W+  +  +     +                  
Sbjct: 188 IAIA-NPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDEKVDGLASL 246

Query: 265 -FHEGIISRYG--------------------------------LDSDVARI--------E 283
              +     Y                                  D+   R          
Sbjct: 247 HKIQDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTDLDQRWYRR 306

Query: 284 ILGQFPQQ--EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
             G  P      N     + +  A  R+    +  P   G D+A +GGD+T V+   G++
Sbjct: 307 RAGIIPPGGASKNRPFTIDDVNAAWGRDWQP-VGRPQATGIDVARDGGDRTPVISVDGDV 365

Query: 342 IEHIFD 347
           +E  ++
Sbjct: 366 LEVRYE 371


>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
 gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
          Length = 447

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D     F  G+++  I  W    + ++   
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 284


>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 439

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 23/276 (8%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ-L 120
           + +H        +P+ F+  I   RG G T   A        T P  +I+ I+ S  Q L
Sbjct: 19  IRLHPWQKRFIDDPSRFRI-ILKHRGAGATFTIAAEACAEALTHPASTILLISYSLRQSL 77

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  ++  V   LS L ++      S+    +   A  +E   G                 
Sbjct: 78  E--IFRHVRTILSRLENKRLKHGHSIYRLAAKIGARTVELGNGSR--------IISLPNN 127

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           P++  G       AV+ DEA+      N      FT +  N    + S  +   GWF++ 
Sbjct: 128 PESLRGYRAD---AVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPKGKRGWFHEA 184

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPH 299
           +      W ++ +       I     E +       S +  R E++ +F   EVN FIP+
Sbjct: 185 WTTDNT-WSKHLVKLGDSPHITMHDLEELRKTM---SPLEWRQEMMCEFLD-EVNAFIPY 239

Query: 300 NYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVV 334
             I E +        +   + +G D      D TV+
Sbjct: 240 EKILECVEDYVPARVVGGRVYVGVDFGRF-RDSTVI 274


>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 449

 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 21/279 (7%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A + +  +S R G  I+C              E    L    ++   E 
Sbjct: 20  GGRGSGKSYFLAELAV-EVSRRIGTVILCA------------REFQGSLDDSVYQLLIET 66

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +   +       +       +       +  +  +  G         + +EA   
Sbjct: 67  IERLGYTEEFDILKSTITHKGTGAKFVFYGIKNNVTKIKSIQG-----VGVCWVEEAEAV 121

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-D 262
                  ++           W+  +    L+  +      P +D    + +        D
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYRRFIVHPPQDSIVLKANYDINPHFAD 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
           +     ++     D D+ R   LG+         I  ++IE A+    +         I+
Sbjct: 182 TPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFQAAGKRIL 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           G D+A EG D    V R G+++  +  W  + +  +  +
Sbjct: 242 GFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADK 280


>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
 gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
           PittGG]
          Length = 366

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLGLRAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D     F  G+++  I  W    + ++   
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 284


>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
 gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
          Length = 512

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRG 339
           + G F     +     IP  ++E A +R    D  AP+  +G D+A  G DKT++  R G
Sbjct: 277 LYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGLDVARGGRDKTILARRHG 336

Query: 340 NIIEHIFDWSAKLI 353
              +    +  K  
Sbjct: 337 WWFDEPLVYPGKDT 350


>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
 gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
 gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
 gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3031]
 gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3047]
 gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
          Length = 447

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D     F  G+++  +  W    + ++   
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 284


>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
           R3021]
 gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.4-21]
 gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
           influenzae R2866]
          Length = 447

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QVEMLGLQDFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D     F  G+++  +  W    + ++   
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 284


>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
 gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
           86-028NP]
          Length = 447

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +G +   +T      +     +  G        V+ +E    
Sbjct: 73  QIEMLGLQNFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D     F  G+++  I  W    + ++   
Sbjct: 245 VGFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANR 284


>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 449

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 86/279 (30%), Gaps = 21/279 (7%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A + +  ++ R G  I+C              E    L    ++   E 
Sbjct: 20  GGRGSGKSYFLAELAV-EVARRIGTVILCA------------REFQGSLDDSVYQLLTET 66

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +   +   +               +       +  +  +  G         + +EA   
Sbjct: 67  IARLGYTQEFEILKSSIRHKGTGAKFVFYGVKNNITKIKSIQG-----VGICWVEEAEAV 121

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-D 262
                  ++           W+  +    L+  +      P +D    + +        D
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYQRFIVHPPKDSIVLKANYDINPHFAD 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
           +     ++     D D+ R   LG+         I  ++IE A+    +         I+
Sbjct: 182 TPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFSAAGRRIL 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           G D+A EG D    V R G+++  +  W  + +  +  +
Sbjct: 242 GFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADK 280


>gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1]
 gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1]
 gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1]
 gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1]
          Length = 533

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRG 339
           + G F     +     IP  ++E A +R    D  AP+  +G D+A  G D T++  R  
Sbjct: 298 LYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHA 357

Query: 340 NIIEHIFDWSAKLI 353
              +    +  K  
Sbjct: 358 MWFDVPLTYPGKDT 371


>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
           10810]
          Length = 447

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 26/269 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C              E+ K +S    +     
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   L    ++     Q +  +   +T      +     +  G        V+ +E    
Sbjct: 73  QVEMLGLQDFFDVQKTQIIEQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E        ++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
               E +      D ++ R    G+ P  + +   I   +IE A+    +          
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           +G D+A EG D     F  G+++  I  W
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVW 273


>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
           NJ9703]
 gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
           NJ9703]
          Length = 450

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQID 254
           + +EA    D     ++    +      W+ T N + +    Y  F   P +D     ++
Sbjct: 117 WIEEAENVSDESWNILIPTIRKAGSE-IWL-TWNPKNILDPTYQRFVVNPPDDMVDIVVN 174

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAID 312
                 +         S    D D+ R   LG+       + I   +I+ A+    +   
Sbjct: 175 YTDNIYLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGF 234

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +     I+G D+A EG D +  + R G+++  + +W  + +  +  +
Sbjct: 235 EATGQRILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADK 281


>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
 gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
          Length = 485

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P     E +     H    ++ S     + A   GR  GK+   +   ++ +  RPG  
Sbjct: 5   RPSDKFFELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQ 62

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              IA +  Q +      V K   +       E+Q                     +K  
Sbjct: 63  GWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRV 122

Query: 170 TITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMT 227
             +  R  S +RPD   G        V  DEA+  P  +  ++I    +  +   + ++ 
Sbjct: 123 ATSEFRGKSADRPDNLRGATLD---FVILDEAAMIPFSVWSEAIEPTLSVRDG--WALII 177

Query: 228 SNTRRLNGWFYDIF 241
           S  + LN WFY+ F
Sbjct: 178 STPKGLN-WFYEFF 190


>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
 gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
          Length = 485

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P     E +     H    ++ S     + A   GR  GK+   +   ++ +  RPG  
Sbjct: 5   RPSDKFFELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQ 62

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              IA +  Q +      V K   +       E+Q                     +K  
Sbjct: 63  GWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRV 122

Query: 170 TITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMT 227
             +  R  S +RPD   G        V  DEA+  P  +  ++I    +  +   + ++ 
Sbjct: 123 ATSEFRGKSADRPDNLRGATLD---FVILDEAAMIPFSVWSEAIEPTLSVRDG--WALII 177

Query: 228 SNTRRLNGWFYDIF 241
           S  + LN WFY+ F
Sbjct: 178 STPKGLN-WFYEFF 190


>gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
 gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
          Length = 419

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 51/319 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q+E ++ +D H  S             I   R  GK+ + ++      +T+P  +I+ 
Sbjct: 6   PYQIEIVKGIDSHKFSV------------IKMARQTGKSFVVSYWATRRATTKPNHAIVV 53

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           ++ +E Q K            +   +    ++++ L    ++ +   + + ++  + +  
Sbjct: 54  VSPTERQSK------------LFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQI 101

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNT 230
                   PD   G        V  DE +   +   + +++    T    +   +  S  
Sbjct: 102 --IALPANPDGIRGFSGD----VIMDEVAFFKNWQEVYRAVFPIITRK-KDYKLVAISTP 154

Query: 231 RRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              N  FY ++    N P        I     +G+     E  +     + D  R E L 
Sbjct: 155 FGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEE--LRAGIKNEDAWRTEYLV 212

Query: 287 QFPQQEVNNFIPHNYIEEAMSREA------IDDLYAPLIMGCDIAGEGGDKTVVVF--RR 338
           +F   E +  +P+  I++    +       I +L   L  G D+     D TV+    + 
Sbjct: 213 EFID-EADAVLPYELIQKCEMPKEELLVEDIKELKGELYCGVDVGRR-KDLTVITLLEKL 270

Query: 339 GNI--IEHIFDWSAKLIQE 355
           G++  +  I + S K  +E
Sbjct: 271 GDVLYVRRIEELSKKPFRE 289


>gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
 gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
          Length = 244

 Score = 59.4 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 39/217 (17%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---------------IICIANSET 118
           +P  F+  +  GR  GK+ L   +   +I                      ++    +  
Sbjct: 18  DPQKFQVLV-CGRRFGKSHLQ--VTKHVIDCLMFPKLMPGYNVKQQTMETAVLVGMPTLK 74

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q +  LW  + K L   P+         ++   G   +++   +  ++       + +  
Sbjct: 75  QARKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDIILAGLNDNAGDRARGLKLWR- 133

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                           V  DE     P +I+  I+    +  P+   + T   +  N   
Sbjct: 134 ----------------VCIDEVQDVRPSVIDAVIIPAMADT-PHSRALFTGTPKGKNNHL 176

Query: 238 YDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
           Y++F      +DWK Y   T T   I     E    R
Sbjct: 177 YNLFTMERDNDDWKSYNFPTWTNPLISKDEVERARKR 213


>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
           KW20]
 gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
 gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
          Length = 394

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 13/240 (5%)

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           ++ E+ K +S    +     Q   L    ++     Q +G +   +T      +     +
Sbjct: 1   MFREIQKSISDSVIQM-LADQIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKS 59

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242
             G        V+ +E           ++    E        ++ N + +    Y  F  
Sbjct: 60  MTGID-----VVWVEEGENVSKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVI 112

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNY 301
            P E  K   ++ +          E +      D ++ R    G+ P  + +   I   +
Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVW 171

Query: 302 IEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           IE A+    +          +G D+A EG D     F  G+++  I  W    + ++   
Sbjct: 172 IEYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 231


>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
 gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
 gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
          Length = 460

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDAFVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D D A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDKDQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GN+I  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272


>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 384

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 12/223 (5%)

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            E Q   L+   ++     Q +G +   +T      +     +  G        V+ +E 
Sbjct: 2   LEDQIEILNLKPFFEVQKTQIIGRNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEG 56

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259
                     ++    E        ++ N + L    Y  F   P E      ++ +   
Sbjct: 57  ENVSKESWDVLIPTIREDGSQII--VSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNP 114

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYA 316
                  E +      D ++ R    GQ P  + +   I   +IE+A+   ++       
Sbjct: 115 YFPKELMEDMKQMKERDFELYRHVYEGQ-PVADSDLAIIKPLWIEKAVDAHKKLGFTASG 173

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
             ++G D+A EG D     F  G+++  + +W    + ++   
Sbjct: 174 RKVVGFDVADEGIDANANCFAHGSVVLQVDEWRGDDVIQSAHR 216


>gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 599

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 84/302 (27%), Gaps = 67/302 (22%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RG+GKT L+A   L      PG  II  A +++Q  N L    ++ LS L HR    +
Sbjct: 82  ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLEKIENELLSPLIHREIESI 141

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            + +  P   +          +     +          D   G H  + + V  DE    
Sbjct: 142 NTGNQKPMIAF---------HNGSWIRVVASN------DNARG-HRANLLLV--DEFVKV 183

Query: 204 P-DIINKSILGFFTELNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
             D+I+       T      F          R  N   Y         W    + + T +
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTKQ 243

Query: 260 GIDSGFHEGIISR------------------------------------------YGLDS 277
            +     + + S                                           +G   
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334
                     F ++    F P   + +A     I +     ++  D+A  GG   D +V 
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363

Query: 335 VF 336
             
Sbjct: 364 SL 365


>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
          Length = 460

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D + A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GN+I  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGDDANATTLMHGNVIMEVDEWDG 272


>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
           MedDCM-OCT-S04-C890]
          Length = 311

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 26/177 (14%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +S         IA +  Q K+  W  + ++ + +P+  + E +     P+G    LL   
Sbjct: 1   MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG-- 58

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
                            E  D   G +         DE +     +  + I    ++   
Sbjct: 59  ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99

Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
             + +       +N  FYD+       EDW  Y+      + +D    E      G 
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154


>gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652]
 gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 465

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 27/276 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPG---------MSIICIANSETQLKNTLWAEVSKWLSML 135
           GR  GK+   A + ++L                +++ IA    Q +  L   V   L  +
Sbjct: 68  GRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVLVIATDRRQARVIL-RYVRAMLDNI 126

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P      +Q++    +    +L   +          + R Y+      +           
Sbjct: 127 P-----LLQAMVERDTADSFDLDNSTTIEVGTASFRSTRGYT------YAAVLCDELAFW 175

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             D+A+     I  +I      + PN   +  S+     G  +D F           +  
Sbjct: 176 RTDDAAEPDYAILDAIRPGMASI-PNSMLLCASSPHARRGALWDAFKRFWGKDDAPLVWR 234

Query: 256 RTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                ++    + ++      D   A  E   +F + ++  F+    +E+ +SR   +  
Sbjct: 235 AATREMNPTISQSVVDRALERDHASAMAEYGAEF-RSDIEQFVNIEVVEDCVSRGVYERA 293

Query: 315 YAPLI---MGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             P I      D +G   D   +         +I D
Sbjct: 294 PLPNIRYRAFVDPSGGSNDSMTLAIGHKEGERNILD 329


>gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin]
 gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 423

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 79/252 (31%), Gaps = 38/252 (15%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANS 116
            +E +  H        +P   K  I AGR  GKTT L      W       M +   A S
Sbjct: 6   VIEFLPFHAGQKKIYRSPAKRKV-IRAGRRFGKTTMLEQAGGNWAA---RQMRVGWFAPS 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L              LP           +  S    + + + +G     +      +
Sbjct: 62  YKIL--------------LPSFKTIRDLLKPITISSSKTDSIIELIGGGLVEF------W 101

Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
           + + PD   G    +   +  DE S    G  DI  ++I     + + +   +M    + 
Sbjct: 102 TLDNPD--AGRSRKYHKVII-DEGSLVKKGMRDIWEQAIEPTLLDFDGDA--VMAGTPKG 156

Query: 233 L--NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           +    +FY   N     W+ +   T     I+      II   G    V + E   +F  
Sbjct: 157 VDDENFFYQACNDKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVD 214

Query: 291 QEVNNFIPHNYI 302
               NF   +++
Sbjct: 215 WRGQNFFKLDWL 226


>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
 gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
          Length = 223

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 26/177 (14%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +          IA +  Q K+  W  + ++   +P   + E +     P+G    LL   
Sbjct: 1   MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIPSTKFNETELRVDLPNGARITLLG-- 58

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
                            E  D   G +         DE +     +  + I    ++   
Sbjct: 59  ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99

Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
             + +       +N  FYD+       EDW  Y+      + +D    +      G 
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGE 154


>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 424

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 37/243 (15%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTL-NAWMMLWLISTRPGMSIICIANSETQLKNT 123
              + +  +     +  I  GR  GKTTL       W      G+ +     +       
Sbjct: 12  AKQAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWA---YNGLKVGWFGPTYK----- 63

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                   L++  ++         ++      +++E + G   + +T+          D 
Sbjct: 64  --------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTL---------QDE 106

Query: 184 FVGPHNTHGMAVFNDEASGTPD---IINK-SILGFFTELNPNRFWIMTSNTR--RLNGWF 237
             G    +   +  DE S  P     I + +I     +   +    M    +      +F
Sbjct: 107 DAGRSRFYDRVII-DEGSLVPKGLRSIWEQAIAPTLLDRKGHAI--MAGTPKGIDPENFF 163

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Y+        W+ +   T +   +D      +   Y   + V + E L  F       F 
Sbjct: 164 YEACTDKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFF 221

Query: 298 PHN 300
              
Sbjct: 222 SEE 224


>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
           MedDCM-OCT-S04-C1035]
 gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
           MedDCM-OCT-S04-C1161]
          Length = 223

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 26/177 (14%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +S         IA +  Q K+  W  + ++ + +P+  + E +     P+G    LL   
Sbjct: 1   MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG-- 58

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
                            E  D   G +         DE +     +  + I    ++   
Sbjct: 59  ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99

Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
             + +       +N  FYD+       EDW  Y+      + +D    E      G 
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154


>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
           MedDCM-OCT-S04-C1073]
          Length = 311

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 26/172 (15%)

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
                 IA +  Q K+  W  + ++ + +P+  + E +     P+G    LL        
Sbjct: 6   NPRYAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG------- 58

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWI 225
                       E  D   G +         DE +     +  + I    ++     + +
Sbjct: 59  -----------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG--YCV 102

Query: 226 MTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                  +N  FYD+       EDW  Y+      + +D    E      G 
Sbjct: 103 FIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154


>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
 gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
          Length = 409

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 30/251 (11%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F+  I+ GR  GKT L    +L          I  ++ +    K  +W ++ K +  L  
Sbjct: 17  FRVLIT-GRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKLVKEL-- 73

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                          W   + E  + I   +        +++  D   G        +  
Sbjct: 74  --------------RWDKYINETELTIVLVNNCQISLKGADKSADNLRGV---GLNFLVL 116

Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQI 253
           DE +  P+    + +    ++   N   +     +    W YD+F        +WK ++ 
Sbjct: 117 DEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSWKY 176

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID- 312
            T     ++    E         S   R E    F       +      + A + + +  
Sbjct: 177 TTIEGGQVEPHEIEQAKKDLDARS--FRQEYEASFETYAGVVYYNF---DRAKNVKPVPY 231

Query: 313 DLYAPLIMGCD 323
           D  A + +G D
Sbjct: 232 DQNAVIHIGMD 242


>gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis
           RP62A]
 gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus
           epidermidis RP62A phage SP-beta]
          Length = 599

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 84/302 (27%), Gaps = 67/302 (22%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RG+GKT L+A   L      PG  II  A +++Q  N L    ++ LS L HR    +
Sbjct: 82  ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLEKIENELLSPLIHREIESI 141

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            + +  P   +          +     +          D   G H  + + V  DE    
Sbjct: 142 NTGNQKPMIAF---------HNGSWIRVVASN------DNARG-HRANLLLV--DEFVKV 183

Query: 204 P-DIINKSILGFFTELNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
             D+I+       T      F          R  N   Y         W    + + T +
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTRQ 243

Query: 260 GIDSGFHEGIISR------------------------------------------YGLDS 277
            +     + + S                                           +G   
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334
                     F ++    F P   + +A     I +     ++  D+A  GG   D +V 
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363

Query: 335 VF 336
             
Sbjct: 364 SL 365


>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
 gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
          Length = 460

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D + A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GN+I  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272


>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
 gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
          Length = 460

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D + A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GN+I  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272


>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
 gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
          Length = 460

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D + A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GN+I  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272


>gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
 gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
          Length = 426

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 186 GPHNTHGMAVFNDEASGTPD---IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           G    + +A+  DEA+  P    +  ++IL    +      WI ++   R    FY+++N
Sbjct: 112 GRGRAYDLAII-DEAAFAPSLARVWEEAILPTLLDR-LGSAWIASTPKGRNA--FYELWN 167

Query: 243 IPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           + L+D  W  +   +     +       + +    +    R EIL ++   E   F   +
Sbjct: 168 LTLDDPAWAHFHEPSHRNPFLSQEELARMAATMTRE--RYRQEILAEWVDAEGRVF-SED 224

Query: 301 YIEEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD--WSAKLIQET 356
            +E A+  +  +D         G D+A       V V R G  +E +    W       T
Sbjct: 225 ALEAALLLQGPEDPRPGERYAAGVDLARSQDYTAVAVLRLGAQLELVRVERWRGLSYTLT 284

Query: 357 NQE 359
            ++
Sbjct: 285 ARK 287


>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
 gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
          Length = 460

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA        + I     + N    WI+  N   +  + Y  F   P +D     
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
           I+      +     + I   Y  D + A   I G  P+     + I   +I  A+   ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
              +      +G D+A +G D        GNII  + +W  
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNIIMEVDEWDG 272


>gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
 gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
          Length = 260

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 95/293 (32%), Gaps = 62/293 (21%)

Query: 36  FPWGIK-------GKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            PW             L H+    P  WQ+E                     + A+  GR
Sbjct: 7   IPWAEDLERRLDPVSRLTHWMGHAPDPWQVEAF--------------TTRATEVALRVGR 52

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
             GKT++ A   +  +   P    +C+A +E Q K  +  E+ +           ++Q  
Sbjct: 53  QSGKTSVLAARAVEELHV-PESLTLCVAPAERQAK-IIAREIGR-----------QLQRT 99

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----- 201
           SL  +      LE + G       +     +    DT  G      + +  DE +     
Sbjct: 100 SLVINRPTQTELEIANGA-----RVIALPSTS---DTIRGFPAVSCLII--DECAFLQGD 149

Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTV 258
            G  D+I  S+L   TE         +S     N +F  +F    P +   R  +    +
Sbjct: 150 GGGEDLI-SSVLPMLTEDGQ---VFFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTDI 205

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
             + +   E +           R EIL +    +   +   + IE+A S+   
Sbjct: 206 PRL-ADKVERMRRTLSATK--FRQEILVEM-LADGQAYFDLSIIEQATSKTEK 254


>gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large
           subunit [Acinetobacter baumannii SDF]
 gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large
           subunit [Acinetobacter baumannii]
          Length = 552

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 29/245 (11%)

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
             K+  M      +      L P G+  ++ +  M I +     T    + +      G 
Sbjct: 155 FHKFRDMFSKMPQW------LKPKGFVEKVHDNYMRIINPDNGATITGEAGDNI----GR 204

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                M    DE +       +++    ++ N N   I  S    +   F+   +     
Sbjct: 205 GGRTTMYFL-DEWAFVEQ--QEAVDAAISQ-NTNVH-IKGSTPNGIGDRFHQ--DRFSGR 257

Query: 248 WKRYQIDTRTVE--GIDSGFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPH 299
           +  + +  R          ++  +I  +        D  V   E+   +        IP 
Sbjct: 258 YAVFTMPWRDNPDKNWTVTYNGKVIYPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPS 317

Query: 300 NYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQE 355
            +++ A+   ++   +     I G D+A EG DK     R G ++ ++  WS K   I  
Sbjct: 318 TWVQAAIDAHKKLQIEPTGDRIGGLDVADEGKDKNSFAARHGVVMTYLATWSGKGDDIFG 377

Query: 356 TNQEG 360
           T Q+ 
Sbjct: 378 TTQKA 382


>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
           biprosthecum C19]
 gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
           biprosthecum C19]
          Length = 430

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 88/292 (30%), Gaps = 31/292 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +E +  +            F+ A   GRG  K+   A   ++     PG  ++ +   +
Sbjct: 24  ILEPIPAYRFLTKKPLGSFRFRAAY-GGRGAAKSWEFANAAIYHSLNTPGARVVFVREIQ 82

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             L ++ +  V   L        F   +   H     AE+L   +             + 
Sbjct: 83  GSLADSAFTLVRNRLEAYGLEGAFRQANGRFHHVENGAEILFLGL-------------WR 129

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN--TRRLNG 235
             +P+               +EAS         ++        +  W + +         
Sbjct: 130 GNKPEGIKSL--EGATLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLWNPMLPTDPVD 187

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL----GQFPQQ 291
            F+     P +      I  R     +  F E +  +  LD     +       G +   
Sbjct: 188 RFFRGDVEPQK-----TICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGAYMPS 242

Query: 292 EVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKT--VVVFRRG 339
             N       ++ A    R+ + +    +++G D AG GGD+   VV  R G
Sbjct: 243 AQNALWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYG 294


>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
 gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
          Length = 521

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSRE-AIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           + G F     +     IP  +++ A +R     D     ++G D A  G DKT V  R  
Sbjct: 276 LRGDFSAGAADPAWQLIPTEWVKAAQARWQPRQDKGPMTVLGLDPARGGTDKTSVARRHD 335


>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           84-1]
 gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           124-1]
 gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           84-1]
 gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           124-1]
 gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           85-1]
          Length = 440

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 96  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 153

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 154 INYDENPFLSDTMLKVIEAAKRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKV 212

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 213 LNFEPSGRKRIGFDVADSGADKCANVYRHGSVVYWADEWKAKE 255


>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 454

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 86/253 (33%), Gaps = 25/253 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AGRG GKT   A  + WL  +     I  +  +    +  +    S  LS+ P+      
Sbjct: 82  AGRGFGKTRAGAEWIRWLAQSGRARRIALVGETFDDARQVMVEGASGILSVCPN------ 135

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                    W                    R YS + P+   GP   +G   + DE +  
Sbjct: 136 ---------WARPAWRAGQRTLIWPSGTIARCYSADDPEQLRGPEFDYG---WADEIAKW 183

Query: 204 PDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-VEGI 261
                  +++     +  +   I T+  R +  W  D+     ED    Q  +R     +
Sbjct: 184 RYPSAWDNLMLAL-RIGKSPQCIATTTPRPVR-WLADLA--AAEDTVLVQGASRENAANL 239

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
              F   +  R+G DS +AR E+ G       +     N I            +  +++G
Sbjct: 240 SPAFMAAMHRRFG-DSYLARQELEGIMMSNLPDALWCRNDILRLHRPMPKRHRFIRIVIG 298

Query: 322 CDIAGEGGDKTVV 334
            D A  GGD+T +
Sbjct: 299 VDPAMGGGDETGI 311


>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
           PittII]
 gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
           PittII]
          Length = 379

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            V+ +E           ++    E        ++ N + +    Y  F   P E  K   
Sbjct: 50  VVWVEEGENVSKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVL 107

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--RE 309
           ++ +          E +      D ++ R    G+ P  + +   I   +IE A+    +
Sbjct: 108 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLK 166

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
                     +G D+A EG D     F  G+++  +  W    + ++   
Sbjct: 167 LGFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 216


>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
           1012]
 gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
           1012]
 gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
          Length = 447

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 102 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 159

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 160 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 218

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 219 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 261


>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
 gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
          Length = 467

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 238

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 239 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 281


>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 467

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 238

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 239 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 281


>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
 gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
          Length = 473

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 128 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 185

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 186 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 244

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 245 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 287


>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           60-1]
          Length = 441

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 96  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 153

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 212

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 213 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 255


>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
          Length = 399

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 54  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 111

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 112 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 170

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 171 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 213


>gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
 gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
          Length = 267

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 35/193 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   M +         +  +       + AG+ + K               P   +
Sbjct: 30  PDPWQRSLMNSTSDVIMVLASRRSGKSTTVGVMAGQELAK---------------PDHQV 74

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I ++ +  Q    L+A+++           F  + ++L        + E  +   S   +
Sbjct: 75  IILSPTLAQ-SQLLFAKIA-----------FTWEKMALPIETRRRTMTELHLKNGS---S 119

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           + C    ++  +   G    +G+    DEA+  PD +  +     +    N   +  +  
Sbjct: 120 VVCVPAGQDG-EGARGYGVKNGILA-FDEAAFIPDKVFGA---TLSIAEDNAKTVFITTP 174

Query: 231 RRLNGWFYDIFNI 243
              +G  Y+++  
Sbjct: 175 GGKSGKAYEMWTN 187


>gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS]
 gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS]
          Length = 489

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 85/326 (26%), Gaps = 71/326 (21%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           KG       +P  WQ++ +  V       V    P          RG GKTTL+A ++L+
Sbjct: 41  KGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------RGQGKTTLSAAILLY 90

Query: 101 LISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
           +  TR  G +++  A  E Q             S+        +Q      S  Y    +
Sbjct: 91  IFFTRGEGANVVLFAVDERQ------------ASLAFRVAARMVQLSEDLSSRCYVYADK 138

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             + +    Y +   + +        G      +A   DEA      + +          
Sbjct: 139 LVLPLTDSTYQVMPASAA-----AAEGL---DYVACLCDEAGVINRDVFEVAQLA-QGKR 189

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD- 278
                I             D     L  +     D      +   F       +G D   
Sbjct: 190 ERSVLIAIGTPGPDPN---DQVLADLRAYAAEHPD--DKSLVWREFSAAGFEDHGADCPH 244

Query: 279 ------------------------------VARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                                           R  +  QF       F+P    E   + 
Sbjct: 245 CWELANPALDDFLHRDALHALLPPKTREATFRRARLC-QFSTDTDGAFLPAGVWEGLSTS 303

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVV 334
             +      +++  D +  G D T +
Sbjct: 304 SPVP-PGVDVVLALDGSYNG-DTTAL 327


>gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
           [Salmonella phage Vi01]
 gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
           [Salmonella phage Vi01]
          Length = 736

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 83/269 (30%), Gaps = 51/269 (18%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           TT+ A  +LW         I  +AN E Q    L   + K    LP       +      
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRKAYQDLPFFLQQGCEKFGSTL 327

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
             +  E   +     +   +I  R+ S                 ++ DE +   +     
Sbjct: 328 IEF--ENGSKIYAYATSSDSIRGRSVS----------------LLYVDEVAFIENDFEFW 369

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI--PLE-DWKRYQIDT---RTVEGI- 261
           +S        + +R  I+TS  +   G FYDI     P    +  + +       V    
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKADPRHPQYNDFHLTEVPWYKVPAYT 428

Query: 262 -DSGFHEGIISRYGLDSDVARIEILGQFP---QQEVNNFIPHNYIEEAMSREAIDD---- 313
            D  +     +R G            +F    +  V + IP   +++  S+   +     
Sbjct: 429 KDPDWETKQRARLGD------ARFDQEFGIKFRGSVGSLIPAKCLDKMTSKLYREPNEFT 482

Query: 314 ----LYAPLIMGCDIAGEG----GDKTVV 334
                Y P  +   IA  G    GD +V+
Sbjct: 483 KIYKEYDPQRIYFGIADTGKGVEGDYSVL 511


>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn33]
 gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn33]
          Length = 549

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 86/267 (32%), Gaps = 43/267 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +   P +++  +AN           E+   L +        +Q   L
Sbjct: 85  GKSTIVTAYLLWYVLFNPNVNVAILANKAA-----TAREMLGRLQLSYENLPKWLQQGIL 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +       R  S                 +F DE +  P+ I 
Sbjct: 140 QWNRGSLELENGSKILAASTSASAVRGMSFN--------------VIFLDEFAFVPNHIA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DQFFSSVYPTVSS-GKSTKVIIISTPHGMN-MFYKLWHDAEQGKNEYLPTEVHWSQVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP------HNYIEEAMSRE-----A 310
           D+ + E  I          ++E   +F    V+  I         Y++     +      
Sbjct: 244 DAAWKEQTIKNTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMPYVDPVAQNKGLAIYE 300

Query: 311 IDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             +     I+  D++   G D +  V 
Sbjct: 301 RVEAEHNYIITVDVSRGIGNDYSAFVV 327


>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
 gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
          Length = 430

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++N+EA    +   + +     +      W +  N R    + +  F   P  D    +
Sbjct: 80  VLWNEEAHAMTEAQWEVLEPTIRKEGSEC-WFLF-NPRLTTDFVWRNFVVAPPPDTLVRK 137

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--RE 309
           I+      +       I +    D+++     LG  P+ + +   I  ++IE A+   + 
Sbjct: 138 INYDENPFLSRTIMNVIEAAKARDAEMFEHVYLGM-PRTDDDEAIIKLSWIEAAVDAHKA 196

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+  G++     +W A+ 
Sbjct: 197 LNIEPAGHRRVGFDVADSGADKCANVYAHGSVALWADEWKARE 239


>gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
           phiSboM-AG3]
 gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
           phiSboM-AG3]
          Length = 736

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 57/297 (19%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           TT+ A  +LW         I  +AN E Q    L   + K    LP       +      
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRKAYQDLPFFLQQGCEKFGSTL 327

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
             +  E   +     +   +I  R+ S                 ++ DE +   +     
Sbjct: 328 IEF--ENGSKIYAYATSSDSIRGRSVS----------------LLYVDEVAFIENDFEFW 369

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGI- 261
           +S        + +R  I+TS  +   G FYDI            D+K  ++    V    
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKANPEHPQYNDFKLTEVPWYRVPTYT 428

Query: 262 -DSGFHEGIISRYGLDSDVARIEILGQFP---QQEVNNFIPHNYIEEAMSREAIDD---- 313
            D  +     ++ G            +F    +  V + IP   +++  S+   +     
Sbjct: 429 KDPNWESKQRAKLGD------ARFDQEFGIKFRGSVGSLIPAKCLDKMTSKLYQEPNEFT 482

Query: 314 ----LYAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
                Y P  +   IA  G    GD +V+       I  I D+  K+  +      P
Sbjct: 483 KIYHDYDPKRIYMGIADTGKGVEGDYSVLT------ILDITDYPHKIAAKYRNNTIP 533


>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
          Length = 346

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 1   MLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 58

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 59  INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 117

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 118 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 160


>gi|262067933|ref|ZP_06027545.1| putative protein splicing site [Fusobacterium periodonticum ATCC
           33693]
 gi|291378336|gb|EFE85854.1| putative protein splicing site [Fusobacterium periodonticum ATCC
           33693]
          Length = 832

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 32/254 (12%)

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           +L      P   II  ANS   L   ++           +R  F +          Y   
Sbjct: 353 ILHFAFNNPNKKIIVAANSLN-LITEIF-----------NRMEFLLTGSKSAYKTSYTRK 400

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              S  I   + T      +     +  G        V+ DEA+   +   + ++  F  
Sbjct: 401 RSPSEKIVLINGTQINGFTTGTDGSSIRGQSADR---VYIDEAAYVTEQAYQVLM-AFKL 456

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            NPN  +++ S    L   F   + +    W+ +   +  +   +      + +    + 
Sbjct: 457 DNPNVVFVVFSTPTALETNFRK-WCLVDPAWREFHYPSSILPNFEENDGPELRNSLTEEG 515

Query: 278 DVARIEILGQFPQQEV---------NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE- 327
              ++E+  +F + +          N+   + Y E     E I+     + +G D     
Sbjct: 516 --YKLEVEAEFSEGDSKVFKTENIKNSLYQYKYCE--FREELINPEKWKITIGVDYNEFK 571

Query: 328 -GGDKTVVVFRRGN 340
            G    V+    GN
Sbjct: 572 NGSQICVLGLYCGN 585


>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
 gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
          Length = 416

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 24/284 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GKT +    +       P       A +   +++T W  V +             
Sbjct: 27  GGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDE-----------AA 75

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            SL        A+   +     S + T  CR  S + P   VG      +    D  S  
Sbjct: 76  HSLGFTTKVKSADKEVEFYRGRSYYGTTICR--SMDDPGGIVGFKIARALVDEIDILSKD 133

Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNI-PLEDWKRYQIDTRTVE- 259
                 + I+     + P     +   T      F YD F   P  ++   Q  T   E 
Sbjct: 134 KAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQASTYENEA 193

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDDLYAPL 318
            +   +   ++  Y  +  + +  ++G+F           ++ +              PL
Sbjct: 194 FLPPDYISTLLEDYPEE--LIKAYLMGEFVNLTSGTVYRSYDRLRH--RSTQSIQPREPL 249

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA-KLIQETNQEGC 361
            +G D    G   +VV  +RG     + +    +      +  C
Sbjct: 250 HIGQDF-NVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLC 292


>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
 gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
          Length = 259

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 38/222 (17%)

Query: 43  KPLEHF----SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
            P+E F     +P  WQ++ +         +   SN         +GR  GK+T    + 
Sbjct: 20  DPVERFRLAIGEPDAWQVDLLR--------SDPRSNEADRMILALSGRQSGKSTTAGGLG 71

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                   G ++I  A S  Q    L+  + ++ +  P       Q+ +   +       
Sbjct: 72  --YDDFSRGKTVILTAPSLRQ-STELFRRILEYKNTDPFCPPIVRQTQTELEAHPRHGGR 128

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              +    +   +T  T                   +  DEA    D    +      E 
Sbjct: 129 IIVVPATDQARGMTADT-------------------IIADEACFLDDDALTAFFPMRKET 169

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                  + S      G+FY+ +       +R    +  +  
Sbjct: 170 G---RIFLLSTPNMRQGYFYETWTSAKRV-RRITARSIDIPR 207


>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
          Length = 536

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 44/266 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKTT+ A ++LW         I  +AN   Q +     E+   L ++     + MQ    
Sbjct: 92  GKTTVVAAILLWYAIFNEEYRIAILANKGDQSR-----EILARLQLMYEELPWFMQVGVS 146

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    +L  +S    +     + R  S                 ++ DE +   + + 
Sbjct: 147 VWNKGNIKLGNRSEVFTAATGGSSIRGKSVN--------------LMYLDEFAFVENDVD 192

Query: 208 -NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDS 263
              S     T        I+TS    +N  FY I+         Y  +          D 
Sbjct: 193 FYTSTYPVVTS-GTKTKVIITSTPNGMN-LFYKIWTDSTNGKNNYVHNEAFWHDHPKRDQ 250

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-------- 315
            + +  +            E L +F Q   +  +    +E+   ++ I +L         
Sbjct: 251 AWKDEQLRNMSERQ--FEQEFLCKF-QGSSDTLLSPAKLEQLTYQDHIRELGGNRDFKIY 307

Query: 316 ------APLIMGCDIA-GEGGDKTVV 334
                 A  ++  D++ G G D +V+
Sbjct: 308 EDPIKDASYVVTVDVSEGIGKDYSVI 333


>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 444

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 76/261 (29%), Gaps = 34/261 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AGR  GK+T+    ++   +T+        A S  Q K   + E         +    + 
Sbjct: 54  AGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFE---QRAANNSLLDA 109

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                  S +    L     I  +         +        G            EA+  
Sbjct: 110 LVKDFKWSPFPEITLINGSKILGR--------STSRNGVYLRGKGADGVAIT---EAAFI 158

Query: 204 PDIIN-KSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLED----WKRYQIDTRT 257
            D +    I     + N          T      + Y +F   L D    +K +      
Sbjct: 159 KDKVYHDVIRAMVLDRNGVLRL----ETTPNGMNYVYKLFQEGLNDSTGYYKSFHATVYD 214

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAM---SREAIDD 313
            E +D    E I           RIE L +F   E ++FI P N + E       +    
Sbjct: 215 NERLDREELERIRREIPE--LAWRIEYLAEF--VEDDSFIFPWNLLCEVFDDYELKKEPQ 270

Query: 314 LYAPLIMGCDIAGEGGDKTVV 334
                 +G D+A    D TV+
Sbjct: 271 NGHRYSIGVDLAKY-QDYTVI 290


>gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 463

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 96/322 (29%), Gaps = 36/322 (11%)

Query: 38  WGIKGKPLEHFSQ-P-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W      L  F   P    + +   A+     +  +  +              GK+   A
Sbjct: 24  WAAWRALLSGFYGLPLDDAEAQHWHALTDRESAPQSAHDELWLVVGRRG----GKSNAAA 79

Query: 96  WMMLWLISTRPGMSIIC---IANSE------TQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            + ++    +     +    +A +        Q ++  +  +S  +   P      ++ L
Sbjct: 80  LLAVYEACFKDHRDALAPGEVATTRVMAADRAQARSV-FRYISGLMHANPM-----LERL 133

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +       EL  +++         T R Y+      F            +D+++     
Sbjct: 134 IVREDRESIELSNRAVIEVGTASFRTTRGYT------FAAVIADEVAFWRSDDSANPDSE 187

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           I  ++      LN     +  S+     G  ++ +           +       ++    
Sbjct: 188 IIAAVRPGLATLNGKLIAL--SSPYARRGELWENYRRHYGKASPILVAQAPSRTMNPSLP 245

Query: 267 EGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGC 322
           E ++      D   A  E L +F + +V  F+    +E A     ++  Y   +      
Sbjct: 246 ERVVTEAMERDPASAAAEYLAEF-RTDVETFLQREVVEAATRPTPLELPYNKRVTYTAFV 304

Query: 323 DIAGEGGDK--TVVVFRRGNII 342
           D AG G D+    +  R G  +
Sbjct: 305 DPAGGGADEFTAAIGHREGERV 326


>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
 gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 414

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 39/254 (15%)

Query: 82  ISAGRGIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +++GR  GKT +   W++   + T  G  +  +A +  Q K   W ++            
Sbjct: 25  VNSGRRFGKTRMALTWLLEGALLT-SGSRMWFLAPTRVQAKQIAWRDLK----------- 72

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  + P  W +++ E ++ I+ ++ +   +    +  D+  G           DE 
Sbjct: 73  ------EMVPGSWASQVRESTLTIELRNGSHI-QLAGADYADSLRGQRADR---FAIDEY 122

Query: 201 SGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQIDTR 256
               D+  + ++ L      + +   I +S       +  +++      E W R+   + 
Sbjct: 123 CYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSV 182

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL-- 314
               +   + E       +D  + R E  G      + +      +  A +++ I D   
Sbjct: 183 AGGWVKPEYVEQARQT--MDPSLWRQEFFG-----SIESL--LGAVYPAFNQQNISDTVD 233

Query: 315 -YAPLIMGCDIAGE 327
              PL++GCD    
Sbjct: 234 NGGPLLVGCDFNRS 247


>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
          Length = 477

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 80/310 (25%), Gaps = 73/310 (23%)

Query: 84  AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            GRG  KT   A + L          +  R  M+ I     E  +   L AE+       
Sbjct: 21  GGRGGMKTVSFAKIALITASINKRRFLCLREFMNSI-----EDSVHAVLQAEIETLRLQN 75

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             R               Y +L      I SKH                           
Sbjct: 76  RFRILDNCIKGINDSIFKYGQLARNIASIKSKHDFDVA---------------------- 113

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------- 247
           + +EA    +     ++    +      W    N    +G  Y  F  P +D        
Sbjct: 114 WVEEAETVSEKSLDILIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKDIIDDKGYY 171

Query: 248 ------------WKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                            +        E +    ++  +  YG + D              
Sbjct: 172 EDDDLYVGKVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANY----------- 220

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  I   +++ A+    +         ++  D A  G D+  +  R G ++E    WS 
Sbjct: 221 DDAIIQPEWVDAAIDAHIKLGFKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSE 280

Query: 351 KLIQETNQEG 360
             + +   + 
Sbjct: 281 GDVADATIKA 290


>gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256]
 gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256]
          Length = 436

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 87/264 (32%), Gaps = 31/264 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AGRG GKT   A  +     T PG  I  +A S               L         E 
Sbjct: 56  AGRGFGKTRTGAEWVRAFAETTPGARIALVAAS--------------LLEARQVMVEGES 101

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             L++ P     E  E S+   +         YS   PD+  GP +    A + DE +  
Sbjct: 102 GLLAIAPDHLRPE-YESSLRRLTWPNGAVATLYSAVEPDSLRGPEHD---AAWCDEIAKW 157

Query: 204 P--DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
           P  +    ++    T  +      + T+  R +      I    +   +      R    
Sbjct: 158 PKGEAAWDNL--MLTMRIGARPQVVATTTPRCVPLVRRLIQERGVATTRGRTASNR--RN 213

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
           +   +   + + YG  + + R E+ G+  +   +       IE           +A +++
Sbjct: 214 LSVQWLATMDAIYG-GTRLGRQELDGELLEDVEDALWTRALIERCRVDAGSIGKFARVVI 272

Query: 321 GCD-IAGEGGDKTVVV----FRRG 339
           G D  A  GGD   +V     R G
Sbjct: 273 GVDPPASAGGDACGIVVAALLRDG 296


>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM4]
 gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM4]
          Length = 550

 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 107/345 (31%), Gaps = 59/345 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            ++++ E +  A+  + F    +R         P + ++    +Q + +     H  +  
Sbjct: 24  TKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMYN----FQEDMVTKFHQHRFNIA 79

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                +            GK+T+    +LW +     +++  +AN           E+  
Sbjct: 80  KLPRQS------------GKSTIVTAYLLWYVLFNANVNVAILANKAP-----TAREMLG 122

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            L +        MQ   L  +    EL   S  + S       R  S             
Sbjct: 123 RLQLSYENLPKWMQQGILGWNKGSLELENGSKILASSTSASAVRGMSFN----------- 171

Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---I 243
               +F DE +  P+ I      S+    +    +   I+ S    +N  FY +++    
Sbjct: 172 ---IIFLDEFAFVPNHIAEQFFASVYPTISS-GKSTKVIIISTPHGMN-QFYKLWHDAER 226

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              ++   ++    V G D  + +  I          R+E   +F    V+  I  + + 
Sbjct: 227 GANNYVATEVHWSQVPGRDDKWKQQTIENTSE--AQFRVEFECEF-LGSVDTLITPSKLR 283

Query: 304 EAMSREAIDD-----------LYAPLIMGCDIAGE-GGDKTVVVF 336
               ++ I +                I+  D++   G D +    
Sbjct: 284 IMPYKDPIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCV 328


>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
 gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
           86-028NP]
          Length = 438

 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  L +   FE+
Sbjct: 12  GGRGSGKSWGVAQLLI-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q  +++     +E +   +  +              +  +  G        V+ +EA   
Sbjct: 71  QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 113

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            +     ++    +      W+  +    L+  +      P ++    +I+         
Sbjct: 114 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 172

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
                +      D ++ R   LG+ P  + +   I   +IE A+   ++         I+
Sbjct: 173 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 231

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           G D+A +G D     F  G+++  + +W  + +
Sbjct: 232 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDV 264


>gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
 gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
          Length = 425

 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 22/260 (8%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+               G + + ++  E Q         S+ L+     H   M+ + 
Sbjct: 28  TGKSFALTLEAALHAVEHRGSTWVLLSAGERQ---------SRELAEKAKAHLDAMKQVG 78

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPD 205
                 + E  E    ++ +   ++   +    P T  G        V  DE +     +
Sbjct: 79  TLMESRFFEGGESVTQLEIRLPNLSRLIFLPANPRTARGYTGN----VVLDEFAFHQDSE 134

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            I  ++    T   P+    + S      G F++++      W R+++            
Sbjct: 135 AIWAAMYPIITRR-PDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKVTIYDAVAQGLPV 193

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP--LIMGCD 323
               +     D  + + E L +F   E   F+P + I EA +RE     + P    +G D
Sbjct: 194 DPEELRAGLADDFIWQQEYLCEFLSAEE-AFLPWSLILEAEAREDPRGPWNPDQAYLGVD 252

Query: 324 IAGEGGDKTVVVF--RRGNI 341
           +     D TV V   R G++
Sbjct: 253 VGRH-RDLTVFVVLERVGDV 271


>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
 gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
 gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3031]
 gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3047]
          Length = 449

 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  L +   FE+
Sbjct: 23  GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEDFEV 81

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q  +++     +E +   +  +              +  +  G        V+ +EA   
Sbjct: 82  QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            +     ++    +      W+  +    L+  +      P ++    +I+         
Sbjct: 125 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 183

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
                +      D ++ R   LG+ P  + +   I   +IE A+   ++         I+
Sbjct: 184 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           G D+A +G D     F  G+++  + +W  + +
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDV 275


>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-RSM4]
 gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-RSM4]
          Length = 547

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 86/274 (31%), Gaps = 57/274 (20%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +     +++  +AN           E+ + L +        MQ   L
Sbjct: 83  GKSTIVTAYLLWYVLFNANVNVAILANKAA-----TAREMLQRLQLSYENLPNWMQQGIL 137

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +       R  S                 +F DE +  P+ I 
Sbjct: 138 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 183

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 184 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYVPTEVHWSEVPGR 241

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--- 318
           D  + E  I          R+E   +F    V+  I       A S+  I   + P+   
Sbjct: 242 DDVWKEQTIKNTSE--SQFRVEFECEF-LGSVDTLI-------APSKLRIMPYHDPITSN 291

Query: 319 ---------------IMGCDIAGE-GGDKTVVVF 336
                          I+  D++   G D +    
Sbjct: 292 RGLAVYEQVIPEHNYIITVDVSRGVGNDYSAFCV 325


>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
 gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
          Length = 449

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  L +   FE+
Sbjct: 23  GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 81

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q  +++     +E +   +  +              +  +  G        V+ +EA   
Sbjct: 82  QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            +     ++    +      W+  +    L+  +      P ++    +I+         
Sbjct: 125 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 183

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
                +      D ++ R   LG+ P  + +   I   +IE A+   ++         I+
Sbjct: 184 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           G D+A +G D     F  G+++  + +W  + +
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDV 275


>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM5]
 gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM5]
          Length = 549

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 47/267 (17%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +   P +++  +AN           E+ + L +        +Q   L
Sbjct: 85  GKSTIVTSYLLWYVLFNPNVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +       R  S                 +F DE +  P+ I 
Sbjct: 140 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGSNEYVPTEVHWSEVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-------------EAMSR 308
           D  + E  I          R+E   +F    V+  I  + +               A+  
Sbjct: 244 DEVWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRIMPYHEPMNQNRGLAVFE 300

Query: 309 EAIDDLYAPLIMGCDIAGE-GGDKTVV 334
           +AI +     I+  D++   G D +  
Sbjct: 301 QAIPE--HNYILTVDVSRGVGNDYSAF 325


>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
 gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
          Length = 445

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  L +   FE+
Sbjct: 19  GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 77

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q  +++     +E +   +  +              +  +  G        V+ +EA   
Sbjct: 78  QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 120

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            +     ++    +      W+  +    L+  +      P ++    +I+         
Sbjct: 121 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 179

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
                +      D ++ R   LG+ P  + +   I   +IE A+   ++         I+
Sbjct: 180 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 238

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           G D+A +G D     F  G+++  + +W  + +
Sbjct: 239 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDV 271


>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM1]
 gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM1]
          Length = 549

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 47/269 (17%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +     +++  +AN           E+ + L +        +Q   L
Sbjct: 85  GKSTIVTSYLLWYVLFNDNVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +       R  S                 +F DE +  P+ I 
Sbjct: 140 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYIPTEVHWSEVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-------------EAMSR 308
           D  + E  I          R+E   +F    V+  I  + +               A+  
Sbjct: 244 DDVWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRIMPYHDPMKENRGLAIFE 300

Query: 309 EAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
           ++I D     ++  D++   G D +    
Sbjct: 301 QSIPD--HNYVITVDVSRGVGNDYSAFCV 327


>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
 gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
          Length = 459

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +     I            W++  N  +   + Y  F   P  D    Q
Sbjct: 115 ILWLEEAQYLTEEQWNVINPTIRREGSQ-IWLIW-NPDQYTDFIYQNFVVNPPADCLSKQ 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAI 311
           I+      +     + I   Y  D       + G  P+       I   Y+  A+  +A 
Sbjct: 173 INWTENPFLSDTMLKVIYDEYQRD-PKLAEHVYGGAPKMGGDKAIIQLQYVLAAI--DAH 229

Query: 312 DDLYAPLI----MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
             L   +      G DIA +G D   +V   GN++    +W  
Sbjct: 230 KKLGWKIEGSKRTGFDIADDGDDANAIVDAIGNVVVWAEEWDG 272


>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           Syn19]
 gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           Syn19]
          Length = 549

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 43/267 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +     +++  +AN           E+ + L +        +Q   L
Sbjct: 85  GKSTIVTSYLLWYVLFNQNVNVAILANKAA-----TSREMLQRLQLSYENLPKWLQQGIL 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +   +   R  S                 +F DE +  P+ I 
Sbjct: 140 QWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHIA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DQFFSSVYPTISS-GQSTKVIIISTPHGMN-MFYKLWHDAERSKNEYIPTEVHWSEVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-----------EAMSREA 310
           D+ + E  I+         ++E   +F    V+  I  + +            + ++   
Sbjct: 244 DAKWKEQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRVMPYHDPIAQNKGLAVYK 300

Query: 311 IDDLYAPLIMGCDIAG-EGGDKTVVVF 336
             +     I+  D+A     D +    
Sbjct: 301 RAEPDHNYIITVDVARGTSNDYSAFCV 327


>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
           MedDCM-OCT-S09-C20]
          Length = 454

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 104/330 (31%), Gaps = 38/330 (11%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN---SNPTIFKCAISAGRGIGKTTLNAW 96
              +P+E    P     + + A  +            + +    +   G G GK+   A 
Sbjct: 14  EPKRPVERAIDPGA--ADALRAKILADCLPAQREFLDDESHRILSYIGGFGSGKSFALAA 71

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +++L    PG +++    +   ++  L   +   L                + +    E
Sbjct: 72  KLIFLGLRNPGGTLMACEPTFPMIRTVLVPAIDMALDQ--------WDIEYSYRASPQPE 123

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE--ASGT--PDIINKSIL 212
               S+ + +   TI C++      + +      +  A   DE   S         + +L
Sbjct: 124 Y---SINLPTGPVTIYCQSA-----ENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLL 175

Query: 213 GFFTELNPNRFWIMTSNTRRLNG--WFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
                   N+  + +       G  W Y  F      D +  ++ T+    + + F   +
Sbjct: 176 ARMRTGELNQLAVAS----TPEGFRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSL 231

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328
              Y   S + +  + G F      +  P    + +++  +        + +G D+   G
Sbjct: 232 ERNY--PSQLIQAYLEGHFVNLASCSLYP--EFDRSLNYCDTQPTENDTIWIGVDL-NVG 286

Query: 329 GDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
              T  + RRG+      +   +  Q+  Q
Sbjct: 287 NCVTQHLVRRGDEFHFFAEKVYRDTQQIAQ 316


>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
 gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
 gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
 gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
 gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
 gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
 gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
 gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
 gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
 gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
 gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
 gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
 gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
           D27]
 gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
 gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
 gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
 gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
 gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
 gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
 gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
 gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
 gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
 gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
 gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
 gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
 gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
 gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
           D27]
 gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
 gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 418

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 37/229 (16%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++                   + P  W  +  + +M I  K+ +      + 
Sbjct: 66  MARQILWDDLQ-----------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA- 107

Query: 179 ERPDTFVG--PHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           ++PDT  G   H      V  DE     PD   K +    +        ++    +  + 
Sbjct: 108 DKPDTLRGVALH-----FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS- 159

Query: 236 WFYDIF----NIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            F+ ++    N        WK +Q  T     + S   E   +     S
Sbjct: 160 EFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 208


>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
 gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
          Length = 463

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 10/209 (4%)

Query: 147 SLHPSGWYAEL-LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            +  +GW  E  +  S        +           +   G         + +E  G  +
Sbjct: 87  KIEAAGWRDEFDIGVSTIRHKLTGSEFLFYGLARNIEEIKG--TEGVDVCWIEEGEGLTE 144

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDS 263
                I     +     + +   N   +   F       L         I+      + +
Sbjct: 145 EQWSIIDPTIRKEGAEVWVLW--NPHLITD-FVQAKLPALLGADCIIRHINYPDNPFLSA 201

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMG 321
                       D D  R   LGQ    +  + I  ++IE A+    +   +L     +G
Sbjct: 202 TAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLGIELGGARTVG 261

Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            D+A  G DK       G I + + +W+A
Sbjct: 262 YDVADSGADKNACSVFDGAICDELDEWAA 290


>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 418

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 37/229 (16%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++                   + P  W  +  + +M I  K+ +      + 
Sbjct: 66  MARQILWDDLQ-----------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA- 107

Query: 179 ERPDTFVG--PHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           ++PDT  G   H      V  DE     PD   K +    +        ++    +  + 
Sbjct: 108 DKPDTLRGVALH-----FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS- 159

Query: 236 WFYDIF----NIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            F+ ++    N        WK +Q  T     + S   E   +     S
Sbjct: 160 EFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 208


>gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC
           17616]
 gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
 gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
          Length = 531

 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 29/199 (14%)

Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
           G H  H   +F D  S                   I+++S         + + +      
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYIVDESAFLERPQLVDASLSATTNCR 225

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F           K +    R     D  ++    +   LD  V   EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKVKVFTFHWRDDPRKDDAWYAKQCAE--LDPVVVAQEI 281

Query: 285 LGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+    +   +       G D+A EG DK     R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAAIGAHLKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341

Query: 343 EHIFDWSAK--LIQETNQE 359
             +  WS K   I ET ++
Sbjct: 342 NFLRSWSGKGGDIYETVEK 360


>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
 gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 436

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 33/243 (13%)

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A    Q K+  W  V ++ +++P     E +    +P+G   +L               
Sbjct: 62  VAPFYRQAKSVAWDYVKRFSAVIPGISINESELRIDYPNGSRIQLFG------------- 108

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTR 231
                 +  D   G        V  DE       +    I     +     + ++    +
Sbjct: 109 -----ADNADALRGLFFDG---VVADEYGDWKPSVWGYVIRPALADRGG--WAVIIGTPK 158

Query: 232 RLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             N  F++I+      EDW    I       +     E +      D+   R E+   F 
Sbjct: 159 GRN-QFWEIYQHAGVNEDWLCLTIRASESGLLPPKEIEALQLELTEDA--WRQEMECDFD 215

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                        +        DDLY P   +    D+ G   D  +  F+ G  +  I 
Sbjct: 216 AALPGAIFGKEIWQAEQDGRVKDDLYDPELKVHAVLDL-GFTDDTAIWWFQVGKELRIID 274

Query: 347 DWS 349
            +S
Sbjct: 275 CYS 277


>gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017]
 gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017]
          Length = 476

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 30/174 (17%)

Query: 195 VFNDEASGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY- 251
           +  DEA+   ++     +     +++  +   I+ S     +G F+D  N          
Sbjct: 171 ILFDEAAFQTNLKLSLSAATPAMSQVGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIE 230

Query: 252 QIDTRTVEGIDSGFHEG--------IISRYGLDSDVARIEILGQF--PQQEVNNFIPHNY 301
           +I +  +  ++    E           S YG D+     ++      P+ ++      + 
Sbjct: 231 RIRSGELPPVNKWQREDGNIAIAIHWKSVYG-DNPSYLEDLEKSLSLPKAQIAQEYDLSL 289

Query: 302 IEE-------AMSREAIDDLYAP-------LIMGCDIAGEGGDK--TVVVFRRG 339
            E        A+ R A    Y P         +G D AG G D   +V + + G
Sbjct: 290 TESSSVVFSFAVVRAAATGEYEPQFTEDELYYVGVDPAGSGADYFCSVFLKKTG 343


>gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1]
          Length = 531

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 27/188 (14%)

Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
           G H  H   +F D  S                   ++++S         + + +      
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 225

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F           K +    R     D  ++   ++   LD  V   EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 281

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+        +       G D+A EG DK     R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341

Query: 343 EHIFDWSA 350
           EH+  WS 
Sbjct: 342 EHLESWSG 349


>gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica]
 gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica]
          Length = 473

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 57/332 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +  + V       +  ++  +F  +I   R  GKT     ++       PG ++I
Sbjct: 43  DQWQDDLGKLVCAKRSDGLYAAD--MFAMSI--PRQTGKTYFLGAIVFAFCKMNPGTTVI 98

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     +    AE  K +  L  R       L++H             G ++  +T 
Sbjct: 99  WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
             R     R   F G        +  DEA    +     ++   T  +PN   +      
Sbjct: 144 GSRILFGAREKGF-GRGFAKVDVLIFDEAQILSENAMDDMIPA-TNASPNGLILFAGTPP 201

Query: 230 -TRRLNGWF---------------------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                   F                      D  + P E+    +++        +    
Sbjct: 202 KPTDPGEVFTNLRMDALNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-----PLIMGC 322
            +      DS   R E +G + +  V+       I+  + R+  D L       P  +G 
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHA----QVIKAGLWRDLADPLGPEPGAKPASLGV 315

Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFD-WSAKLI 353
           D++  G       +   + + H+   W+    
Sbjct: 316 DMSHGGAISIGGCWLIDDELRHVEQVWAGTDT 347


>gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98]
          Length = 517

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 27/188 (14%)

Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
           G H  H   +F D  S                   ++++S         + + +      
Sbjct: 152 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 211

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F           K +    R     D  ++   ++   LD  V   EI
Sbjct: 212 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 267

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+        +       G D+A EG DK     R G ++
Sbjct: 268 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 327

Query: 343 EHIFDWSA 350
           EH+  WS 
Sbjct: 328 EHLESWSG 335


>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 441

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 96  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 153

Query: 253 IDTRTVEGIDS---GFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS- 307
           I+      +        +    RY        + +    P+ + +   I  ++IE A+  
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRYPEG----FVHVYEGVPESDDDAAIIKLSWIEAAVDA 209

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
            +           +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 210 HKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 255


>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-ShM2]
 gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-ShM2]
          Length = 362

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 42/256 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +     +++  +AN     +  L     +      +   +  Q + +
Sbjct: 85  GKSTIVTSYLLWYVIFNDNVNVAILANKAATSREML----QRLQRSYENLPKWLQQGI-V 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +   +   R  S                 +F DE +  P+ I 
Sbjct: 140 QWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHIA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DEFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDSERKKNEYISTEVHWSEVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-----DDLYA 316
           D+ +    I+         ++E   +F    V+  I  + +   +  + +       +Y 
Sbjct: 244 DAKWKAQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMVYNDPLVQNKGLSIYE 300

Query: 317 PL------IMGCDIAG 326
            +      ++  D+A 
Sbjct: 301 HVQKDHNYVITVDVAR 316


>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM2]
 gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM2]
 gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
          Length = 547

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 86/266 (32%), Gaps = 43/266 (16%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+T     +L        +++  +AN  +  ++ L       L +        MQ   
Sbjct: 82  TGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLLGR-----LQLAYENLPRWMQQGI 136

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           +  +    EL   S    +   +   R  S                 +F DE +  P+ I
Sbjct: 137 ISWNKGSLELENGSKISANSTSSSAVRGGSYN--------------VIFLDEFAFIPNHI 182

Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
                 S+    T    +   I+ S  R +N  FY +++       ++    +    V G
Sbjct: 183 ADDFFASVYPTITS-GQSTKVIIVSTPRGMN-HFYRMWHDSEKGKSEYVATDVHWSEVPG 240

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDDLY 315
            D  + E  I+         +IE   +F    VN  I    +     E   +R A  D+Y
Sbjct: 241 RDEEWKEQTIANTSEQQ--FKIEFECEF-LGSVNTLINPAKLRNLVYEAPKTRNAGLDIY 297

Query: 316 APL------IMGCDIAGE-GGDKTVV 334
                    I+  D+A   G D +  
Sbjct: 298 ETPVKEHNYIITVDVARGLGNDYSAF 323


>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
 gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
          Length = 427

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 49/297 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
           I  GRG GKT   A    W+ S   G           +  IA +  Q +  +    S  +
Sbjct: 36  IMGGRGAGKTRAGA---EWVRSMVEGPRPDTPGRAKRVGLIAQTMDQAREVMVFGDSGLM 92

Query: 133 SMLP---HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           +  P      W   +++   P+G                     R +S   P+   GP  
Sbjct: 93  ACCPPARRPEWIAGRAMLRWPNG------------------AEARLFSAHDPEALRGPQF 134

Query: 190 THGMAVFNDEASG--TPDIINKSI-LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
               A++ DE +           + +G     +P         T    G F         
Sbjct: 135 D---AIWADEVAKWRLAQEAWDMLVMGLRLGDDPRA----CLTTTPRGGPFLRKLLAQSG 187

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
               +         +  GF   + + +   S + R E+ G    +      P + ++ A+
Sbjct: 188 TVMTHAPTRANRANLAPGFVAAVEAMF-EGSHLGRQELDGLLVDEAEGTLWPQHLLDAAL 246

Query: 307 SREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
            R+A       +++  D       G D   ++           DW   +I++   +G
Sbjct: 247 QRQA--PPLDRIVVAVDPPVTGHAGSDACGIIVAGVEQRGAPTDWRLWVIEDATVQG 301


>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
 gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
          Length = 402

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 37/215 (17%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            +P  FK  + AGR  GK+ L+   ++   +      +  +A +    +  LW ++    
Sbjct: 5   QSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQ--- 60

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNT 190
                          + P  W  +  + +M I  K+ +      + ++PDT  G   H  
Sbjct: 61  --------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA-DKPDTLRGVALH-- 103

Query: 191 HGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIP- 244
               V  DE     PD   K +    +        ++    +  +  F+ ++    N   
Sbjct: 104 ---FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS-EFHKLWTIGQNKDL 157

Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                WK +Q  T     + S   E   +     S
Sbjct: 158 QRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 192


>gi|148256282|ref|YP_001240867.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
 gi|146408455|gb|ABQ36961.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
          Length = 482

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 22/234 (9%)

Query: 105 RPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           RPG    ++C+A    Q +  L              ++ ++  L+   +   AE  E S 
Sbjct: 114 RPGERALVMCLACDRAQARIIL---------NYIRSYFTDLPLLAGMVTRETAEGFELSN 164

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPN 221
           G+D    T + R     RP           +A + DE +  PD  + ++I      L  N
Sbjct: 165 GVDVAVATNSFRAVR-GRPILLAVL---DEVAFWRDENTAKPDEELYRAITPAMATL-SN 219

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVA 280
              I  S+  R +G  Y  F           +       ++    + II R    D   A
Sbjct: 220 SMIIGISSPYRKSGLLYKKFKSHFGKDGDVLVIQAPTRTLNPTIPQEIIDRALAEDPAAA 279

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG---CDIAGEGGDK 331
             E +G+F + ++  ++P   IE A+ +  +     P+ +    CD +G  GD 
Sbjct: 280 SAEWMGEF-RDDIGGWLPLEVIESAVDQGVMVRPPQPIHIYRSFCDPSGARGDS 332


>gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 552

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 29/245 (11%)

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
             K+  M      +      + P+G+  ++ +  M I +     T    + +      G 
Sbjct: 155 FHKFRDMFSKMPDW------MKPTGFVEKVHDNYMRIINPDNGATITGEAGDNI----GR 204

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                M    DE +       +++    ++ N N   I  S    +   F+   +     
Sbjct: 205 GGRTTMYFL-DEWAFVER--QEAVDAAISQ-NTNVH-IKGSTPNGIGDRFHQ--DRFSGR 257

Query: 248 WKRYQIDTRTVEG------IDSGFHEGI-ISRYGLDSDVARI-EILGQFPQQEVNNFIPH 299
           +  + +  R           +          +     DV    E+   +        IP 
Sbjct: 258 YAVFSMPWRANPDKNWTVEYNGKQIHPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPS 317

Query: 300 NYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQE 355
            +++ A+    +   +     I G D+A EG DK     R G ++ ++  WS K   I  
Sbjct: 318 TWVQLAIDAHIKLGIEPTGDRIAGLDVADEGKDKNSFASRHGIVMTYLDTWSGKGDDIFG 377

Query: 356 TNQEG 360
           T Q+ 
Sbjct: 378 TTQKA 382


>gi|158300801|ref|XP_320633.4| AGAP011893-PA [Anopheles gambiae str. PEST]
 gi|157013336|gb|EAA00145.5| AGAP011893-PA [Anopheles gambiae str. PEST]
          Length = 607

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 93/283 (32%), Gaps = 28/283 (9%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           R +  +  L +  +++   A   +S  +F    FP     KP    ++   W    +   
Sbjct: 151 RSLKIEFPLNRLQYKLEYTALVHMSRLDFSSILFPKIESAKP-TTPAKTFDWFQSCIAEN 209

Query: 63  DVHCHSNVN--NSNPTIFKCAISAGRGIGKTT--LNAWMMLWLISTRPGMSIICIANS-- 116
           +    +  N  N         +    G GKT   + A + +W +  RP   I+  A S  
Sbjct: 210 EQQTQAIKNIVNRTAYPAPYILFGPPGTGKTCTIVEAVLQIWKM--RPKSRILVTATSNY 267

Query: 117 ------ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHY 169
                 +  LK     ++ ++ S    R    M    +  S  +  + E  +M    +  
Sbjct: 268 ACNELAKRLLKYVTVNDLFRYFSQTSQRDINGMDLKVVQVSNMHYGIYETPAMQDFVQTR 327

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRF---WI 225
            + C   +  R     G   +    +F DE     ++     +G   T+   NR     +
Sbjct: 328 ILVCTVMTSGRLLQL-GVDRSMYDYIFIDECGSCRELSALVPIGCVGTDTTNNRLQASVV 386

Query: 226 MTSNTRRLNGWFYDIFNIPLED-----W--KRYQIDTRTVEGI 261
           +  +  +L   FYD       D     W    + +  R +  +
Sbjct: 387 LAGDPLQLGPQFYDAELRAKGDPTITHWAVNWHHLPNRKLPML 429


>gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
 gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
          Length = 531

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 27/188 (14%)

Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
           G H  H   +F D  S                   ++++S         + + +      
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 225

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F           K +    R     D  ++   ++   LD  V   EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 281

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+                G D+A EG DK     R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLL 341

Query: 343 EHIFDWSA 350
           EH+  WS 
Sbjct: 342 EHLESWSG 349


>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 421

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 76  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 133

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 134 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 192

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 193 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 235


>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 282

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 75  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 132

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 133 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 191

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 192 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 234


>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 467

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 238

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 239 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 281


>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 414

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 69  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 126

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 127 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 185

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 186 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 228


>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
 gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
          Length = 415

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 33/284 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GK+      M++     PG   + +    + LK +++A     L       W   
Sbjct: 31  GGGGSGKSHFVVQKMIYKYLKYPGRKCLVVRKVNSTLKESIFA-----LFRSVLSDWQIY 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               ++ +    EL  +S+ I              E+  +  G  +     +  +E +  
Sbjct: 86  DECKINKTDLTIELPNKSLFIFKGIDD-------PEKIKSIAGIDD-----IVVEECTEI 133

Query: 204 PDIINKSILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVE 259
            +     +       NP N+  +M  N    + W Y  +       +D        +  +
Sbjct: 134 DEFDFDQLNLRLRSKNPYNQIHVMF-NPVSKSNWVYKRWFKNGYDTKDTIVLHTTYKNNK 192

Query: 260 GIDSGFHEGIISRYGLDSDVA-RIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYA 316
            +   + + ++ +   D+ V  RI  LG+F    ++  I  N+ EE+   + I   +   
Sbjct: 193 FLPKDYIDSLL-KLEKDNPVYFRIYALGEF--ATLDKLIYTNWKEESFDYKEILKNNRNT 249

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
             I   D  G   D T  V    + I         +  E  ++G
Sbjct: 250 KAIFSLDF-GYTNDPTAFVCSIIDKINKKL----WIFDEFQEKG 288


>gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162]
 gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162]
          Length = 489

 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 98/359 (27%), Gaps = 68/359 (18%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           + +E  L+F +  +R      KG   +       WQ++    V           +     
Sbjct: 22  VESERFLAFADKFLRV----PKGTGAKGKLHLRDWQVDVARDV----------LDSGART 67

Query: 80  CAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             I   RG GKTTLNA + L+   +   G ++  +A  E Q            L+    R
Sbjct: 68  VGIMFPRGQGKTTLNAAIALYRFFTGGEGANVCVVAVDERQAG----------LAFSAAR 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              E+          + +     + + +      C   S   P    G      +    D
Sbjct: 118 RMVELNEELSARCQIFKD----RLYLPTTDSVFQCLPAS---PTALEGL---DYVLALVD 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL-------NGWFYDIFNIPLE--DWK 249
           EA      + + +             +               +   Y + +       W+
Sbjct: 168 EAGVVNRDVFEVVQLA-QGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWR 226

Query: 250 RYQIDTRTV---------EGIDSGFHEGIISRY--------GLDSDVARIEILGQFPQQE 292
            +                E  +    + +              +S   R  +  QF    
Sbjct: 227 EFSAAGFEDHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRARLC-QFAADT 285

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF---RRGNIIEHIFDW 348
             +F+P    E   + E +  L A +++  D      D T ++            +  W
Sbjct: 286 EGSFLPAGVWEGLSTGEPVP-LGAEVVIALD-GSFSDDTTALLLGTVAAAPHFHPLRVW 342


>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 456

 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 5/164 (3%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           + +EA          ++    +      W+  +    L+  +      PL+D     +  
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTVHY 174

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAID 312
                        +      D D+      G+ P  + +   I   +I  A+        
Sbjct: 175 TDNPHFPEVLRLEMEECKCKDYDLYLHIWEGE-PVADSDLAIIKPLWIAAAVDAHITLGF 233

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
           +      +G D+A EG D   ++   G+++ H+  W+   + ++
Sbjct: 234 EPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQS 277


>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
 gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
          Length = 444

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 84/284 (29%), Gaps = 26/284 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I  GRG GKT   A    W+ +   G           + +  L  E     ++   R   
Sbjct: 58  ILGGRGAGKTRAGA---EWVRAQVEGPR--ATDPGRAR-RVALVGE-----TIDQAREVM 106

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHY--TITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                 L          E   G     +      + +S   P+   GP      A + DE
Sbjct: 107 VFGDSGLLACAPPDRRPEWIAGRRLLVWPNGAQAQLFSAHDPEALRGPQFD---AAWVDE 163

Query: 200 AS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
            +     +     +        +P       + T R       +        + +     
Sbjct: 164 LAKWKKAEEAWDMLQLALRLGDDPR---CCVTTTPRPTALMRALLERD-GTARTHAPTEA 219

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F   +  RY   S + R E+ G    +          I  A + + + DL+ 
Sbjct: 220 NAANLARAFLAEVRRRY-AGSPLGRQELDGVMLSEIEGALWSAGAI-AAANCDVVPDLHR 277

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
            +++  D +  GGD   +V           +W A ++++ +  G
Sbjct: 278 -VVVAVDPSAGGGDVCGIVVAGACYDGGADNWRAWVLEDASVAG 320


>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 257

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 82  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 139

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 140 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 198

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 199 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 241


>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 282

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 238

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 239 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 281


>gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 478

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 22/195 (11%)

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSI 211
             +E +    G+D +      +T      +T  G      +A ++ E S  PD +I  ++
Sbjct: 144 PTSETIRLLSGVDIEVRPANYKTIRG---ETLAGCLADE-VAFWHLENSANPDTLILDAV 199

Query: 212 LGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-----DTRTV-EGIDSG 264
                T   P     + S+     G  Y              +      ++T+   +D  
Sbjct: 200 RPGLATTGGP---LCVLSSPYARKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPA 256

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMG 321
             +     Y  D   A  E   +F + +V  FI    ++  M+    E            
Sbjct: 257 VVK---RAYTRDPAAASAEYGAEF-RADVEAFISLEAVQACMAGDLLERAPAPGLTYQAF 312

Query: 322 CDIAGEGGDKTVVVF 336
           CD +G G D   +  
Sbjct: 313 CDPSGGGADSMTLAI 327


>gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD]
 gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD]
          Length = 473

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 99/329 (30%), Gaps = 51/329 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +  + V       +  ++  +F  +I   R  GKT     ++  L    PG ++I
Sbjct: 43  DQWQDDLGKLVCAKRSDGLYAAD--MFAMSI--PRQTGKTYFLGAIVFALCKMTPGTTVI 98

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     +    AE  K +  L  R       L++H             G ++  +T 
Sbjct: 99  WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
             R     R   F G        +  DEA    +     ++   T  +PN   +      
Sbjct: 144 GSRILFGAREKGF-GRGFAKVDVLIFDEAQILSENAMDDMVPA-TNASPNGLILFAGTPP 201

Query: 230 -TRRLNGWF---------------------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                   F                      D  + P E+    +++        +    
Sbjct: 202 KPTDPGEVFTNLRLDAINGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVN-NFI-PHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            +      DS   R E +G + +  V+   I P  + + A           P  +G D++
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAK-PASLGVDMS 318

Query: 326 GEGGDKTVVVFRRGNIIEHIFD-WSAKLI 353
             G       +   + + H+   W+    
Sbjct: 319 HGGAISIGGCWLIDDELRHVEQVWAGTDT 347


>gi|168699883|ref|ZP_02732160.1| hypothetical protein GobsU_10183 [Gemmata obscuriglobus UQM 2246]
          Length = 205

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 14/107 (13%)

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
           +  +  VG        V  DE S   D + KS+             +  S      GWF+
Sbjct: 63  DSQEGVVGFSA--PRLVVIDEGSRVSDELYKSVRPMLAVSKGQ--LLTLSTPFGNQGWFF 118

Query: 239 DIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           DI++   E           W+R  +    +  I   F E   +  G 
Sbjct: 119 DIWDDSAEGLKRRSKLHEPWQRTAVPASQIPRITPEFLEDERAELGE 165


>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 374

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 29  VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 86

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 87  INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 145

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 146 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 188


>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
           12885]
 gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
           12885]
          Length = 410

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 36/263 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I AGRG GKT   A  +   +       I  +  +   +++ +    S  LS+ P     
Sbjct: 36  ILAGRGFGKTRTGAEWVREQVERHGRRRIAIVGRTAADVRDVMVEGESGILSISP----- 90

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-- 199
                      W+  + E S    +         YS + PD   GP +    A + DE  
Sbjct: 91  ----------PWFRPVYEPSKRRLTWPNGAIATLYSADEPDLLRGPQHD---AAWADELA 137

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A   P+  +  + G     +P    ++ + T R      D+ N P            T E
Sbjct: 138 AWRRPEAWDNLMFGLRLGPDPR---VVVTTTPRPVKLIRDLLNDP----TCVVTRGSTYE 190

Query: 260 ---GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F E IISRY   + + R E+ G+              I+E   REA + +  
Sbjct: 191 NAANLAPAFLEQIISRY-EGTRLGRQELYGEVLDDVPGALWQRKRIDELRVREAPELVR- 248

Query: 317 PLIMGCDIA---GEGGDKTVVVF 336
            +++  D A    EG D+T +V 
Sbjct: 249 -VVVAIDPAVTSEEGSDETGIVV 270


>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 346

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P ED    +
Sbjct: 1   MLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 58

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D     + +    P+ + +   I  ++IE A+   + 
Sbjct: 59  INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 117

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                     +G D+A  G DK   V+R G++I    +W AK 
Sbjct: 118 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 160


>gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946]
 gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946]
          Length = 427

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 96/264 (36%), Gaps = 29/264 (10%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           +GK+   +   +      P    + ++  E Q         SK L+    RH   +Q ++
Sbjct: 32  VGKSFAASLEAVLDCVAHPRSLWVFLSRGERQ---------SKELAEKAQRHLEAIQVVA 82

Query: 148 -LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTP 204
            ++   + AE  +  + + +    I+        PDT  G        V  DE +     
Sbjct: 83  EMYDEPFDAESTQTVIRLPNGSRIISL----PANPDTARGYSGN----VLLDEFALHKDS 134

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRYQIDTRTVEGID 262
             I  ++    T  +      + S  +   G FY+I+      + W R+++D        
Sbjct: 135 REIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWSRHRVDIYDAVQQG 193

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
                  + +   D  + + E L +F  +    ++P+  I    S +A  D  L   L +
Sbjct: 194 LEVDPEELRKGLKDPVLWQQEYLLEFVDEAS-AWLPYELITSCESSQARTDGALEGDLYL 252

Query: 321 GCDIAGEGGDKTVV--VFRRGNII 342
           G DI     D +V+    R G+++
Sbjct: 253 GMDIGRH-RDLSVIWVAERVGDVL 275


>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)

Query: 84  AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            GRG  KT   A + L          +  R  M+ I     E  +   L AEV   L + 
Sbjct: 12  GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65

Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                       ++ S + Y +L      I SKH                          
Sbjct: 66  NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------ 248
            + +EA    +    +++    +      W    N    +G  Y  F  P ++       
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGY 161

Query: 249 --------------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
                             +        + +    ++     YG + D             
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211

Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
             +  I   ++E A+    +         ++  D A  G D+  +  R G +IE    WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270

Query: 350 AKLI 353
              +
Sbjct: 271 EGDV 274


>gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36]
 gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 18  MLMHAECVLSFKNFVMRFFPW----GIKGKP-----LEHFSQPHRWQLEFMEAVDVHCHS 68
            L   E    + + ++R   W    G K        L    +P  W  E ++        
Sbjct: 18  QLWETE----YDDLIVRTKKWARSTGEKFTEEELHYLAILDKPKFWAAETLKWFCRDYQE 73

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS------IICIANSETQLKN 122
            +        +  +  GR +GKT     M+LW   T+P         I+ IA  E Q+ +
Sbjct: 74  PMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQV-D 132

Query: 123 TLWAEVSKWLSML 135
            ++  +S+ + M 
Sbjct: 133 LIFKRLSQLIDMS 145


>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn1]
 gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn1]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 94/267 (35%), Gaps = 45/267 (16%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+T     +L  +     +++  +AN  +  ++ L A ++     LP   W  +Q   
Sbjct: 84  TGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLL-ARLATAYENLPK--W--IQQGV 138

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           +  +    EL   S  + +       R  S                 +F DE +  P+ I
Sbjct: 139 VVWNKGNIELENGSKILAASTSASAVRGMSFN--------------IIFLDEFAFVPNHI 184

Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
                 S+    T    +   I+ S  + +N  FY ++        D+  +++    V G
Sbjct: 185 ADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWQDAVNGRNDYTYHEVHWSQVPG 242

Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDDL 314
            D+ + E  I      S      E   +F    V+  I  + +     +E ++R    D+
Sbjct: 243 RDAKWKEETIKN---TSQRQFTQEFECEF-LGSVDTLISASKLKALAFDEPITRNKGLDI 298

Query: 315 YAPL------IMGCDIAGE-GGDKTVV 334
           Y         ++  D++   GGD +  
Sbjct: 299 YEKPKDKNEYLLTVDVSRGIGGDYSAF 325


>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM7]
 gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM7]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 46/259 (17%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+T+    +LW +  +  +++  +AN           E+ + L +        +Q   
Sbjct: 85  TGKSTIVTSYLLWYVLFKANVNVAILANKAA-----TSREMLQRLQLSYENLPKWLQQGI 139

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           L  +    EL   S  + +   +   R  S                 +F DE +  P+ I
Sbjct: 140 LQWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHI 185

Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
                 S+    +    +   I+ S    +N  FY +++       ++   ++    V G
Sbjct: 186 ADQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGKNEYIPTEVHWSAVPG 243

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-------------AMS 307
            D+ + +  I+         ++E   +F    V+  I  + +               A+ 
Sbjct: 244 RDAAWKDQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMPYEDPIIQNRGLAVY 300

Query: 308 REAIDDLYAPLIMGCDIAG 326
           ++   +     I+  D+A 
Sbjct: 301 KQV--EKDHNYIVTVDVAR 317


>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 93

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 14 ELHEMLMH--AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
          ++ + L+   AEC      + +  + WG     LE  + P  WQ E M  +  H  +   
Sbjct: 3  DIDDELIELAAECATDPLRWALHAYDWGR--GELEGVTGPRAWQREVMSDIGNHLKNPAT 60

Query: 72 NSNPTIFKCAISAGRGIG 89
            +      A  AGRG+G
Sbjct: 61 RFS------AFDAGRGLG 72


>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
          Length = 469

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 38/183 (20%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------- 248
           + +EA    +    S++    +      W    N    +G  Y  F  P ++        
Sbjct: 105 WVEEAETVSEKSLDSLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYY 162

Query: 249 -------------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                            +        + +    ++     YG + D              
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  I   ++E A+    +         ++  D A  G D+  +  R G +IE    WS 
Sbjct: 212 EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271

Query: 351 KLI 353
             +
Sbjct: 272 GDV 274


>gi|203288482|ref|YP_002223299.1| bsr protein [Borrelia duttonii Ly]
 gi|201084467|gb|ACH94050.1| bsr protein [Borrelia duttonii Ly]
          Length = 450

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 91/294 (30%), Gaps = 51/294 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105
           + Q + + A++ +  +          K  +S G   GKT L        + T        
Sbjct: 47  KKQRKVLSAIEKNNQN----------KVILSGGIASGKTFLA---CYLFLKTLLKNRHRY 93

Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
               +   + NS+  L+  +  +  K  +M       ++  +  + +  Y E+    + +
Sbjct: 94  SHDTNNFILGNSQKALEINVTGQFKKLANM------LKIPFVPKYSNTSYFEINSLRVNL 147

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                      Y  ++   F     ++   ++ +EA+       K  L     + P    
Sbjct: 148 -----------YGGDKIRDFERFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIV 195

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
             T N      +F   +      +  Y   T   E I   F +     Y  D    +  +
Sbjct: 196 FDT-NPDHPEHYFKTDYIDNNTVYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASV 253

Query: 285 -LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
            LG++       F   N IE        D  +   I   D A   GGD T +  
Sbjct: 254 LLGEWVANNDAIFRNINIIE--------DYEFKSPIAYLDPAYSSGGDNTSLCV 299


>gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A]
 gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A]
          Length = 532

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 10/158 (6%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           F DEA+   +   +++          R  I + N   LN  F +         K   +  
Sbjct: 203 FVDEAAHLENA--QAVDTALAATTNCRIDISSVN--GLNNPFAE--KRFSGRVKVKTMHW 256

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--D 313
           R     D  +++    ++  ++ V   EI   +        IP  +I+ A+  +      
Sbjct: 257 RDDPRKDDEWYKKQKQKF--NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGLT 314

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +        D+A EG D      R G  +++   WS K
Sbjct: 315 VTGQRFSSLDVADEGKDMNAFGSRLGIRMDYAESWSGK 352


>gi|168704532|ref|ZP_02736809.1| hypothetical protein GobsU_33659 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 14/107 (13%)

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
           +  +  VG        V  DE S   D + KS+             +  S      GWF+
Sbjct: 63  DSQEGVVGFSA--PRLVVIDEGSRVSDELYKSVRPMLAVSKGQ--LLTLSTPFGNQGWFF 118

Query: 239 DIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           DI++   E           W+R  +    +  I   F E   +  G 
Sbjct: 119 DIWDDSAEGLKRRAKLHEPWQRTAVPASQIPRITPEFLEDERAELGE 165


>gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
 gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
          Length = 526

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 286 GQFPQQEVN---NFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
           G F     +     IP ++++ A  R  + ID      ++  D+A  G D+TV+    G 
Sbjct: 287 GDFLAARQDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDRTVLQPLHGR 346

Query: 341 IIEHIFDWSAKLIQETNQEGCPVGSSI 367
             E              ++G  VGS I
Sbjct: 347 RFETNIVRKGTDT----KDGADVGSLI 369


>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)

Query: 84  AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            GRG  KT   A + L          +  R  M+ I     E  +   L AEV   L + 
Sbjct: 12  GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65

Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                       ++ S + Y +L      I SKH                          
Sbjct: 66  NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
            + +EA    +    +++    +      W    N    +G  Y  F  P          
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGY 161

Query: 246 ----EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
               + +           +        + +    ++     YG + D             
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211

Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
             +  I   ++E A+    +         ++  D A  G D+  +  R G +IE    WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270

Query: 350 AKLI 353
              +
Sbjct: 271 EGDV 274


>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
 gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
 gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
 gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)

Query: 84  AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            GRG  KT   A + L          +  R  M+ I     E  +   L AEV   L + 
Sbjct: 12  GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65

Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                       ++ S + Y +L      I SKH                          
Sbjct: 66  NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
            + +EA    +    +++    +      W    N    +G  Y  F  P          
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGY 161

Query: 246 ----EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
               + +           +        + +    ++     YG + D             
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211

Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
             +  I   ++E A+    +         ++  D A  G D+  +  R G +IE    WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270

Query: 350 AKLI 353
              +
Sbjct: 271 EGDV 274


>gi|221316874|ref|YP_002527821.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|226246930|ref|YP_002776267.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
 gi|221237339|gb|ACM10180.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|226201508|gb|ACO38105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 16/157 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +E +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E+ M            I   D A   GGD T +  
Sbjct: 271 ITEDYMFTSP--------IAYLDPAFSVGGDNTALCV 299


>gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
 gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 34/292 (11%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              RG GK+   A  ++  I   P ++ +      T  K++ +A + K    +     F+
Sbjct: 41  KGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLDLFK 100

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                L  +       +Q+               +  +P    G         + +EA  
Sbjct: 101 FTKSPLEIT------YKQTGQKVFFRGMDDPLKITSIQP--VTGFICRR----WCEEAYE 148

Query: 203 TP-----DIINKSILGFFTELNPNRFWIMTSNT----RRLNGWFYDIFNIPLEDWKRYQI 253
                  D + +S+ G           ++T N       L   F+D         +    
Sbjct: 149 LKSLDAFDTVEESMRGEL-PPGGFYQTVITFNPWSDRHWLKHEFFDDKTK-RNHSRAITT 206

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
             +  + +++ + + +      + + AR+ +LG++   E   F           R+   D
Sbjct: 207 TYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFE-----QRDFSYD 261

Query: 314 LYA--PLIMGCDIAGEGGDKTV---VVFRRGNIIEHIFDWSAKLIQETNQEG 360
             A  P  +G D  G   D T    +   + N I +I+D   K    TNQ  
Sbjct: 262 EIANLPKSVGLDF-GFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIA 312


>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
 gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
          Length = 549

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 42/256 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T+    +LW +     +++  +AN           E+ + L +        +Q   L
Sbjct: 85  GKSTIVTSYLLWYVLFNANVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
             +    EL   S  + +       R  S                 +F DE +  P+ + 
Sbjct: 140 QWNRGSLELENGSKILAASTSASAVRGMSFN--------------VIFLDEFAFVPNHVA 185

Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
                S+    +    +   I+ S    +N  FY +++       ++   ++    V G 
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERKANEYIPTEVHWSEVPGR 243

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-------- 313
           D+ + E  I          R+E   +F    V+  I  + +   +  + I +        
Sbjct: 244 DAAWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRTMVYGDPIAEKNGLSMYE 300

Query: 314 ---LYAPLIMGCDIAG 326
                   ++  D++ 
Sbjct: 301 KTIQGHTYVITADVSR 316


>gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
 gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
          Length = 538

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 16/141 (11%)

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           S    +   F +         K +    R     D  +++  +       ++  + +  +
Sbjct: 229 STPNGMANSFAE--RRHSGKIKVFTFHWRDDPRKDDAWYQKQVE------NLDPVTVAQE 280

Query: 288 ----FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
               +        IP  +++ A++             +   DIA EG D      R G +
Sbjct: 281 IDINYSASVEGVLIPSAWVQAAINAHEVLGIVPTGQRLGALDIADEGKDTNSFAGRHGFL 340

Query: 342 IEHIFDWSAK--LIQETNQEG 360
           +E I +WS K   I  T Q+ 
Sbjct: 341 LESIEEWSGKGDDIFGTVQKA 361


>gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
 gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 89/313 (28%), Gaps = 46/313 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H             K   S G   GKT L +++++  +    S    
Sbjct: 46  TTKQKEVLFDIESHK----------YSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS + L      ++ K   +        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSISLLMTNTIKQIEKICRL------LGIDYQKKKSGQSFCKIAGFELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D F      +   ++ +EA+         +L            I 
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVLKRL--RKGKSIIIF 196

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
            +N      +F   +    + +K Y   T       + F E     Y   S   +  +L 
Sbjct: 197 DTNPESPAHFFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHSPAYKARVLY 255

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEH 344
           G++     ++        +       D  +   IM  D A   GGD T +        E 
Sbjct: 256 GEW-IVNESSLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAICVLE-RTFEK 306

Query: 345 IFDWSAKLIQETN 357
            + +  +  +  N
Sbjct: 307 FYAYIYQDQKPVN 319


>gi|221316998|ref|YP_002533177.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|221237630|gb|ACM10461.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++A  I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFASPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224593667|ref|YP_002641021.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|224554694|gb|ACN56072.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
          Length = 450

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R    
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERIDEK 306


>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
          Length = 469

 Score = 46.7 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 38/183 (20%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------- 245
           + +EA    +    +++    +      W    N    +G  Y  F  P           
Sbjct: 105 WVEEAETVSEKSLDTLISTIRKPGSE-LWFSF-NPSEEDGAVYQRFVKPYKAIIDKKGYY 162

Query: 246 ---EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
              + +           +        + +    ++     YG + D              
Sbjct: 163 EDDDLYVGNVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  I   +++ A+    +         ++  D A  G D+  +  R G +IE    WS 
Sbjct: 212 DDALIQPEWVDAAIDAHIKLGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271

Query: 351 KLI 353
             +
Sbjct: 272 GDV 274


>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
 gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
          Length = 416

 Score = 46.7 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 49/272 (18%)

Query: 82  ISAGRGIGKTTLNA-WMMLWLI-----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A W+    +     + RP   I  +A +   ++  +   VS  L++ 
Sbjct: 31  VLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRIALVAETMADVREVMVEGVSGLLAVH 90

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P       +                             + +S E P++  GP      A 
Sbjct: 91  PRAERPRWEPTR---------------RRLEWANGAVAQGFSAEDPESLRGPQFA---AA 132

Query: 196 FNDEASGTPDIINKSILGFF------TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
           + DE +       K     F        L      ++T+  R        +    L D  
Sbjct: 133 WLDELAK-----WKRAEATFDMLQFGLRLGAQPRQMVTTTPRPTA-----LLRRLLADPS 182

Query: 250 RYQIDTRTVEG---IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
                 RT +    +   F   +++RYG  + + R E+ G+  +   +       +E   
Sbjct: 183 TAVTRARTADNAFHLAPSFLGQVLTRYG-GTRLGRQELDGELIEDRADALFSRPALEA-- 239

Query: 307 SREAIDDLYAPLIMGCDI---AGEGGDKTVVV 335
            REA       +++  D    +  G D   +V
Sbjct: 240 LREAQVPPLTRIVVAVDPPASSRAGADACGIV 271


>gi|225575978|ref|YP_002724813.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225576296|ref|YP_002725339.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547342|gb|ACN93326.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547454|gb|ACN93434.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
          Length = 450

 Score = 46.7 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
                 +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNTATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
            I+        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 IIQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERVDDK 306


>gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1]
 gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1]
          Length = 486

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSRE-AIDDLYAPLI-MGCDIAGEGGDKTVVVFRR 338
           + G F     +     IP  ++  A  R  A      P+  +G D+A  G D+++   R 
Sbjct: 264 LYGDFAAGREDDPWQVIPSEWVRLAQERWRARSRPRIPMTALGVDVARGGQDQSIYTPRY 323

Query: 339 GN 340
           GN
Sbjct: 324 GN 325


>gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82]
 gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
 gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82]
 gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
          Length = 558

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           + P G+  ++ +  M I +     T    + +      G      M    DE +      
Sbjct: 169 MKPKGFIEKVHDNYMRIINPDNGATVTGEAGDNI----GRGGRTTMYFL-DEWAFVER-- 221

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
            +++    ++ N N   I  S    +   F+   +     +  + +  R     +     
Sbjct: 222 QEAVDAAISQ-NTNVH-IKGSTPNGIGDKFHQ--DRFSGRYAVFTMAWRDNPDKNWQVEL 277

Query: 268 GIISRYGL--------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP 317
                Y          D  V   E+   +        IP  +++ A+    +   +    
Sbjct: 278 DGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQAAVDAHIKLGIEPSGE 337

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360
                D+A EG DK     R G +++++  WS     I  T Q+ 
Sbjct: 338 RNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKA 382


>gi|195942579|ref|ZP_03087961.1| hypothetical protein Bbur8_07059 [Borrelia burgdorferi 80a]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|203288734|ref|YP_002223670.1| bsr protein [Borrelia duttonii Ly]
 gi|201084584|gb|ACH94162.1| bsr protein [Borrelia duttonii Ly]
          Length = 330

 Score = 46.3 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 16/157 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   ++ +EA+       K +L     + P      T N      +F   +
Sbjct: 35  ERFRG---SNSAVIYVNEATTLHKETLKEVLKRL-RMKPEFIIFDT-NPDHPEHYFKTDY 89

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
                 +  Y   T   E I   F +     Y  D    +  + LG++       F   N
Sbjct: 90  IDNNTVYSTYNFTTYDNETISKEFIKTQEEIY-KDLPTYKASVLLGEWVANNDAIFRNIN 148

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
            IE        D  +   I   D A   GGD TV+  
Sbjct: 149 IIE--------DYEFKSPIAYLDPAYSSGGDNTVLCV 177


>gi|219723016|ref|YP_002474442.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692691|gb|ACL33908.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|226246851|ref|YP_002776184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
 gi|226202003|gb|ACO38584.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|203288843|ref|YP_002223837.1| bsr protein [Borrelia duttonii Ly]
 gi|201084394|gb|ACH93979.1| bsr protein [Borrelia duttonii Ly]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 51/294 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------- 104
           + Q + + A++ +  +          K  +S G   GKT L        + T        
Sbjct: 47  KKQRKVLSAIEKNNQN----------KVILSGGIASGKTFLA---CYLFLKTLLKNRHLY 93

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R G +   + NS+  L      E++         +  ++  +  + +  Y E+    + +
Sbjct: 94  RKGTNNFILGNSQKAL------EINVIEQFEDLANMLKIPFVPKYSNRSYFEIDSLRVNL 147

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                      Y  ++   F     ++   ++ +EA+       K  L     + P    
Sbjct: 148 -----------YGGDKIRDFKRFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIV 195

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
             T N      +F   +      +  Y   T   E I   F +     Y  D    +  +
Sbjct: 196 FDT-NPDHPEHYFKTDYIDKNTVYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASV 253

Query: 285 -LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
            LG++       F   N IE        D  +   I   D A   GGD T +  
Sbjct: 254 LLGEWVANNDAIFRNINIIE--------DYEFKSPIAYLDPAYSSGGDNTSLCV 299


>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 483

 Score = 46.3 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 5/167 (2%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           + +EA          ++    +      W+  +    L+  +      PL+D     +  
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTVHY 174

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAID 312
                        +      D D+      G+ P  + +   I   +I  A+        
Sbjct: 175 TDNPHFPEVLRLEMEECKCKDYDLYLHIWEGE-PVADSDLAIIKPLWIAAAVDAHMTLGF 233

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           D      +G D+A EG D   + F +G+++  + +W    +  ++  
Sbjct: 234 DAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNR 280


>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
          Length = 414

 Score = 46.3 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 40/263 (15%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AGR  GKT+L+  +++   S +P   I  +A +    K  +W ++             
Sbjct: 26  VVAGRRWGKTSLSRTLII-SKSRKPRQRIWYVAPTYRMAKQIMWKDL------------- 71

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +   P  W  ++   S+ I+  + T+     +++ PD+  G        +  DE  
Sbjct: 72  ----IEAIPRKWVVKINHSSLSIELVNGTLIELKGADD-PDSLRGVGID---FLVLDEFQ 123

Query: 202 GTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWF--YDIFNIPLE----DWKRYQID 254
              +    + +         +  +I     +  N  +  Y     P +     W+ +Q  
Sbjct: 124 DISEEAWTQCLRPTLASTGGHAIFI--GTPKAYNQLYTVYMQGQDPKKVKAGQWQSWQFP 181

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
           T T   I     E   +     S   + E L  F       + P +  E     +   D 
Sbjct: 182 TITSPFIPESEIEAARADMDEKS--FKQEFLASFETMSGRVYYPFDRKEHVG--KYPFDP 237

Query: 315 YAPLIMGCDIAGEGGD--KTVVV 335
             P+ +G D      D   TV++
Sbjct: 238 KLPIWIGMD---FNIDPMSTVIM 257


>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 460

 Score = 46.3 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 93/280 (33%), Gaps = 29/280 (10%)

Query: 65  HCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMML-WLISTRPGMSIICIANSETQLK 121
           H H+  +   PT       +  GRG GKT   A ++  W     PG  I  +A  E+ ++
Sbjct: 41  HHHARASQHPPTGAWTEWLLMTGRGWGKTRTAAELVRDWA--KNPGTQIAVVAKKESLVR 98

Query: 122 NTLWA-EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  +  + S  L ++P        +       +       ++                E 
Sbjct: 99  SICFEHKTSGLLHVIPKSDQARFNASGGSGRFFLQLKNGSTIYGFG-----------AEV 147

Query: 181 PDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTE--LNPNRFWIMTSNTRRLNGWF 237
           PD   G         + DE A+       +     + +   +P+   ++++  + L    
Sbjct: 148 PDNLRGFAFDKA---WFDEFAAWNKQTAQEVYDMMWYDLRESPSPQMVISTTPKPLKHV- 203

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
            D+ + P     R       +  + +   E +   YG  + + R E+ G+  +       
Sbjct: 204 RDLVSKPGVVITRGHTKD-NLPNLSAIALEKLERDYGK-TRLGRQELAGELIESIEGALW 261

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVV 334
                ++ + R         +++G D A    EG D T  
Sbjct: 262 DVTMFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAF 301


>gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 440

 Score = 46.3 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 88/269 (32%), Gaps = 35/269 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AGRG GKT L A  +  +    P   I  +  S  + ++ +                 
Sbjct: 57  VMAGRGFGKTRLGAEWVRKIAEEDPEARIALVGASLHEARSVMVE--------------- 101

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-- 199
               L    + W   + E S+             YS   P++  GP ++H    + DE  
Sbjct: 102 GESGLLSIDAPWRRPVFESSVRRLVWPNGAQAFLYSAGEPESLRGPQHSHA---WCDEIA 158

Query: 200 ----ASGTPDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
                S        ++L G     +P      T     L     D      +D    +  
Sbjct: 159 KWDNGSNRAMATWDNLLMGLRLGRDPRLVATTTPRPVPLVARIMD----EGDDVVVTRGS 214

Query: 255 TRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T   +  +   F E +   +G  + + R E+LG+  +  V        IE A  RE    
Sbjct: 215 TFENQDNLPRRFVEAMRRTFGGTT-LGRQELLGEMIEDLVGALWSRALIENA--REDAAP 271

Query: 314 LYAPLIMGCDI--AGEGGDKTVVVFRRGN 340
               +++G D   +  G    ++V   G+
Sbjct: 272 AMTRVVVGVDPPASAHGDACGIIVCGIGD 300


>gi|224020497|ref|YP_002601287.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|223929730|gb|ACN24438.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 INNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
 gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
          Length = 450

 Score = 46.3 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 74/260 (28%), Gaps = 28/260 (10%)

Query: 84  AGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            GRG GKT   A W+    + T     I  +  +   ++  +                  
Sbjct: 67  GGRGAGKTRAGAEWVRHRALRTV--SRIALVGPTFNDVREVM------------IEGPSG 112

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           ++ L         E   + +   S         +S E  D   GP   +    + DE + 
Sbjct: 113 LKHLGSAMERPRYEASRKRLVFPSGSQAY---AFSAEDADGLRGPQFDYA---WGDEFAA 166

Query: 203 TPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            PD    ++   +G      P      T             ++        +Q       
Sbjct: 167 WPDPQRVLDTLRMGVRLGGAPRILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAA 226

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +  GF E + + YG  S + R E+ G               IE A            ++
Sbjct: 227 NLAPGFVEALNAAYG-GSMLGRQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIV 285

Query: 320 MGCDIAGEGG---DKTVVVF 336
           +  D    GG   D+  +V 
Sbjct: 286 VALDPPATGGPRSDECGIVV 305


>gi|226315790|ref|YP_002776047.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
 gi|226201663|gb|ACO38256.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D  + +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKPY-KDIPLYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497124|ref|NP_051248.1| hypothetical protein BB_S45 [Borrelia burgdorferi B31]
 gi|223987739|ref|YP_002601211.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|6382145|gb|AAF07462.1|AE001576_21 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|223929452|gb|ACN24166.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 97/304 (31%), Gaps = 42/304 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--- 103
           +F +    QL  ++  +V      NN    IF   I++    GKT L  ++ L  +    
Sbjct: 36  NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIIFSGGIAS----GKTYLACYLFLKSLIENK 90

Query: 104 --TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                  +   I NS+  ++  +  +  K   +       ++  +  H +  Y  +    
Sbjct: 91  KLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNSYILIDSLR 144

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           + +                 + F G   ++   +F +EA+       + +L         
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                T N      +F   +   +  +K Y   T     +  GF E     Y  D    +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250

Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
             + LG++     + F   N  +        D ++   I   D A   GGD T +    R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMER 302

Query: 338 RGNI 341
             + 
Sbjct: 303 VDDK 306


>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM7]
 gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM7]
          Length = 552

 Score = 45.9 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 43/257 (16%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GK+T     +L        ++I  +AN     ++ L   +      LP   W  MQ   +
Sbjct: 86  GKSTTVVSYLLHYAIFNDSVTIGILANKAQTARDLL-GRLQIAYENLPK--W--MQQGII 140

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTP 204
             +    EL  +S  I +       R  S                 +F DE    A+   
Sbjct: 141 AWNKGSMELENKSKIIAASTSASAVRGMSFN--------------IIFLDEFAFVANHLA 186

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGI 261
           D    S+    +    +   I+ S  R +N  FY +++       ++    +    V G 
Sbjct: 187 DDFFSSVYPTISS-GKSTKVIIVSTPRGMN-HFYRLWHDAELGRNEYVTTDVHWSEVPGR 244

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI---------- 311
           D  + E  I          R+E   +F    V+  I  + ++  +  E I          
Sbjct: 245 DEAWKEQTIKNTSE--AQFRVEFECEF-LGSVDTLIAPSKLKTMVYDEPINTGKRGGEIY 301

Query: 312 --DDLYAPLIMGCDIAG 326
                     +  D+A 
Sbjct: 302 QNPIEKHNYSITVDVAR 318


>gi|226246889|ref|YP_002776229.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
 gi|226202275|gb|ACO37943.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 42/304 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--- 103
           +F +    QL  ++  +V      NN    I    I++    GKT L  ++ L  +    
Sbjct: 36  NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIENK 90

Query: 104 --TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                  +   I NS+  ++  +  +  K   +       ++  +  H +  Y  +    
Sbjct: 91  KLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNLYILIDSLR 144

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           + +                 + F G   ++   +F +EA+       + +L         
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                T N      +F   +   +  +K Y   T     +  GF E     Y  D    +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250

Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
             + LG++     + F   N  +        D ++   I   D A   GGD T +    R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMER 302

Query: 338 RGNI 341
             + 
Sbjct: 303 VDDK 306


>gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1]
 gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin
           [Escherichia coli IAI1]
          Length = 540

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLMENVREWSGVGSDIYQSVEK 361


>gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86]
          Length = 540

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|203288609|ref|YP_002223516.1| bsr protein [Borrelia duttonii Ly]
 gi|201084316|gb|ACH93904.1| bsr protein [Borrelia duttonii Ly]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 95/291 (32%), Gaps = 49/291 (16%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
           Q E +  +D +  S +      IF   IS+    GKT L +++++ L+           +
Sbjct: 49  QKEVLRDIDNNFCSKI------IFNGGISS----GKTFLASYLLIKLLIINRDHYHKDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              + +S   L      ++ K  S+L   +                 LL+ S  +     
Sbjct: 99  NFIVGSSIGTLLANTLKQIEKICSLLNIEY-----------------LLKDSRQVTCTIA 141

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +T   Y  +  D+F     ++   V+ +EA+         I+    +  P      T N
Sbjct: 142 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQK-PGIIIFDT-N 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQF 288
                 +F   +    + ++ Y  +          F +   + Y  +    +  + LG++
Sbjct: 200 PDHPAHYFKVDYIDNRDVYRTYNFNIYDNPLNSKDFIKTQEAIY-KNLSAYKARVLLGEW 258

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGE-GGDKTVVVF 336
                        I+   +   ++  Y     IM  D A   G D T +  
Sbjct: 259 ----------TASIDSCFNEVILNCEYTFKSPIMYIDPAFSVGMDNTAICV 299


>gi|224983831|ref|YP_002641150.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|224554243|gb|ACN55633.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497063|ref|NP_051203.1| hypothetical protein BB_P42 [Borrelia burgdorferi B31]
 gi|6382084|gb|AAF07402.1|AE001575_3 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497292|ref|NP_051420.1| hypothetical protein BB_L43 [Borrelia burgdorferi B31]
 gi|6382313|gb|AAF07626.1|AE001580_11 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y+  T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
 gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
          Length = 422

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 87/260 (33%), Gaps = 28/260 (10%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I AGRG GKT   A  +  L  +     I  +A +    ++ +   +     +L      
Sbjct: 45  ILAGRGFGKTRTGAEWVRGLAESGRARRIALVAETAADARDVM---IEGESGLLAC---- 97

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                    + W     E S    +        ++S + PD   GP      A + DE +
Sbjct: 98  --------CAPWGRPKYEPSKRRVTWPNGAIATSFSADDPDQLRGPQFD---AAWADEIA 146

Query: 202 G--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   +  +LG     +P    + T+   +   W   +   P               
Sbjct: 147 KWRYEAAWDNLMLGLRLGADP--RCVATTTP-KPRAWLARLMADP-GTVVTRGATRENAG 202

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +  GF + I++RY   + + R EI G+F  +          IE A +        A +I
Sbjct: 203 NLAPGFLDQILARY-AGTRLGRQEIDGEFLTEIPGALWTRTLIEGARALPGAVPGLARII 261

Query: 320 MGCDIA---GEGGDKTVVVF 336
           +  D A   G   D+T +V 
Sbjct: 262 VAVDPAVTSGSDSDETGIVV 281


>gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606]
 gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606]
          Length = 540

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
           DSM 1131]
 gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
           DSM 1131]
          Length = 470

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 75/267 (28%), Gaps = 21/267 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +            +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPTKIKSLEGVD-----VCWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    + N    W+  +    L+  +      P +D      +        
Sbjct: 123 VTKESWDILIPTIRKPNSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTANYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        +I 
Sbjct: 182 DVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAIIA 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             D +  GGD      R G++++ I +
Sbjct: 242 THDPSDVGGDAKGYAMRHGSVVKRISE 268


>gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171]
 gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171]
 gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407]
 gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010]
          Length = 540

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|312147626|gb|ADQ30287.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATALHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 540

 Score = 45.9 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1406

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 41  KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
           +G   +            Q E  E +  +    +  +    F+ +   G        G G
Sbjct: 805 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTILLNELKDFENSDETGGCIMSHAPGTG 864

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
           KT L    +   +   P    + IA +   L    WA E  KW   +P  +   +     
Sbjct: 865 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 921

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S     L++++    S +     + YS  +  + +G
Sbjct: 922 ESSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 959


>gi|226246703|ref|YP_002776000.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|226202392|gb|ACO38050.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 97/307 (31%), Gaps = 42/307 (13%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
            L +F +    QL  ++  +V      NN    I    I++    GKT L  ++ L  + 
Sbjct: 33  SLINFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLI 87

Query: 104 -----TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                     +   I NS+  ++  +  +  K   +       ++  +  + +  Y  + 
Sbjct: 88  ENKKLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRYTNNSYILID 141

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              + +                 + F G   ++   +F +EA+       + +L      
Sbjct: 142 SLRINLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RC 189

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                   T N      +F   +   +  +K Y   T     +  GF E     Y  D  
Sbjct: 190 GQETIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIP 247

Query: 279 VARIEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             +  + LG++     + F   N  +        D ++   I   D A   GGD T +  
Sbjct: 248 SYKARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCV 299

Query: 337 --RRGNI 341
             R  + 
Sbjct: 300 MERVDDK 306


>gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253]
          Length = 540

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7]
          Length = 540

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50]
          Length = 313

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS--REAID 312
           R     D  ++     +  +D+ V   + L   +        IP  +++ A+    +   
Sbjct: 28  RDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGI 85

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
                 +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 86  QPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 134


>gi|195942433|ref|ZP_03087815.1| hypothetical protein Bbur8_06259 [Borrelia burgdorferi 80a]
          Length = 450

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D  + +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPLYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219723069|ref|YP_002474484.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219693000|gb|ACL34209.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|312147710|gb|ADQ30370.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 INNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
           S-RSM4]
 gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
           S-RSM4]
          Length = 550

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 99/344 (28%), Gaps = 61/344 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            ++++ E +      + F    ++         P + +     +Q E +   D H +   
Sbjct: 24  TKKQIDEWIKCKNDPIYFAMNYIQIISLDEGLVPFKMYD----FQKEILR--DFHENRFN 77

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
               P             GK+T     +L+       ++I  +AN  +        E+  
Sbjct: 78  IAKLPRQ----------TGKSTTVVAYLLYYAIFYDSVNIGILANKAS-----TARELLG 122

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            L +        MQ   L  +    EL   S  + +       R  S             
Sbjct: 123 RLQLAYENLPKWMQHGILVWNKGNVELENGSKILAASTSASAVRGMSFN----------- 171

Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
               +F DE +  P+ +      S+    T    +   I+ S    +N  FY ++     
Sbjct: 172 ---ILFLDEFAFVPNHVAEQFFASVYPTITS-GKSTKVIIISTPNGMN-HFYKMWEDARR 226

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYI 302
              D+   ++    V G D+ + E  I      S      E    F     +  I    +
Sbjct: 227 GKNDYVTNEVHWSQVPGRDAKWKEETIKN---TSPRQFAQEFECDF-LGSADTLISPAKL 282

Query: 303 E-----------EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVV 334
           +             +            I+  D+A   GGD +  
Sbjct: 283 QNIPFHDPIQSNAGLDVYERVQKDHEYIITVDVARGIGGDYSAF 326


>gi|111074104|ref|YP_709233.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
 gi|110891215|gb|ABH02376.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
          Length = 450

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   +
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQID 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|312148837|gb|ADQ31485.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312148805|gb|ADQ31454.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312147637|gb|ADQ30298.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312147604|gb|ADQ30266.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224590670|ref|YP_002640676.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|224553765|gb|ACN55167.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224983785|ref|YP_002641105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|224553986|gb|ACN55383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|195942842|ref|ZP_03088224.1| hypothetical protein Bbur8_08565 [Borrelia burgdorferi 80a]
 gi|312150044|gb|ADQ30103.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           N40]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|225622041|ref|YP_002724986.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
 gi|225546350|gb|ACN92359.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|225576422|ref|YP_002725451.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|225547005|gb|ACN92996.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|226322171|ref|ZP_03797692.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
 gi|226232426|gb|EEH31184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224022662|ref|YP_002606275.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|224593632|ref|YP_002640950.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
 gi|223929246|gb|ACN23964.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|224554688|gb|ACN56067.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219723193|ref|YP_002474612.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|224591572|ref|YP_002640899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
 gi|219693035|gb|ACL34243.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|224554907|gb|ACN56281.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
 gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
          Length = 507

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P        
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPDLMNSIAL 113

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           +    P+              S  Y      Y     D F   H      V+ DE +   
Sbjct: 114 TKYGKPNIHRKPYFRLEFTNGSVLYFRPAGAYG----DAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        + +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11]
 gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11]
 gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1]
          Length = 540

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 11/164 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+  
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
             +         +   D+A EG DK     R G ++E++ +WS 
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|203288341|ref|YP_002223391.1| bsr protein [Borrelia recurrentis A1]
 gi|201085561|gb|ACH95134.1| bsr protein [Borrelia recurrentis A1]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 49/291 (16%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
           Q E +  +D +  S +      IF   IS+    GKT L +++++ L+           +
Sbjct: 11  QKEVLRDIDNNFCSKI------IFNGGISS----GKTFLASYLLIKLLIINRDNYHKDTN 60

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
                +S   L      ++ K  S+L   +                 LL+ S  +     
Sbjct: 61  NFIFGSSIGTLLANTLKQIEKICSLLNIEY-----------------LLKDSRQVTCTIA 103

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +T   Y  +  D+F     ++   V+ +EA+         I+    +  P      T N
Sbjct: 104 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQK-PGIIIFDT-N 161

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQF 288
                 +F   +    + ++ Y             F +   + Y  +    +  + LG++
Sbjct: 162 PDHPAHYFKVDYIDNRDVYRTYNFSIYDNPLNSKDFIKTQEAIY-KNLSAYKARVLLGEW 220

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGE-GGDKTVVVF 336
                        I+   +   ++  Y     IM  D A   G D T +  
Sbjct: 221 ----------TASIDSCFNEVILNCEYTFKSPIMYIDPAFSVGMDNTAICV 261


>gi|226315871|ref|YP_002776346.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
 gi|226202080|gb|ACO37753.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 95/304 (31%), Gaps = 42/304 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
           +F +    QL  ++  +V      NN    I    I++    GKT L  ++ L  +    
Sbjct: 36  NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIANK 90

Query: 106 ----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                  +   I NS+  ++  +  +  K           ++  +  H +  Y  +    
Sbjct: 91  NLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKR------LKIPYIPRHTNNSYILIDSLR 144

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           + +                 + F G   ++   +F +EA+       + +L         
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQE 192

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                T N      +F   +   +  +K Y   T     +  GF E     Y  D    +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250

Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
             + LG++     + F   N  +        D ++   I   D A   GGD T +    R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMER 302

Query: 338 RGNI 341
             + 
Sbjct: 303 VDDK 306


>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-PM2]
 gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-PM2]
          Length = 548

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 110/343 (32%), Gaps = 59/343 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            ++++ E +  A   + F    ++         P +       +Q E +  +  H +   
Sbjct: 23  TKEQVKEWIKCANDPVYFTKNYVKIVSLDEGLVPFKM----WDFQEELI--MKFHKNRFN 76

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
               P             GK+T     +L  +     ++I  +AN  +  ++ L A ++ 
Sbjct: 77  IAKLPRQ----------TGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLL-ARLAT 125

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
               LP   W  +Q   +  +    EL   S  + +       R  S             
Sbjct: 126 AYENLPK--W--IQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFN----------- 170

Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
               +F DE +  P+ I      S+    T    +   I+ S  + +N  FY ++     
Sbjct: 171 ---IIFLDEFAFVPNHIADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWVDATN 225

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               +  +++    V G D  + E  I            E   +F    V+  I  + ++
Sbjct: 226 GRNGYTFHEVHWSQVPGRDEKWKEETIKNTSERQ--FTQEFECEF-LGSVDTLIAASKLK 282

Query: 304 E-----AMSREAIDDLYAPL------IMGCDIAGE-GGDKTVV 334
                  + R    D+Y         +M  D++   GGD +  
Sbjct: 283 ALVFNDPIKRNKGLDIYEEPKEKSEYLMTVDVSRGIGGDYSAF 325


>gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075]
 gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
          Length = 507

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P      M 
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           S++L   G      +    ++  + ++     +    D F   H      V+ DE +   
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        + +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB]
 gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 507

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P      M 
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDSNPD----LMN 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           S++L   G      +    ++  + ++     +    D F   H      V+ DE +   
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        + +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
          Length = 540

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ V   + L   +        IP ++++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306

Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             R  I      L    D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 540

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ V   + L   +        IP ++++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306

Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             R  I      L    D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
          Length = 526

 Score = 45.1 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 48/274 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-VSKWLSMLPHRHW 140
           + A R  GK+  +   +LW +   P +++  +AN     K  +  E +++ ++ML    +
Sbjct: 80  VLASRQSGKSITSCAYLLWFLLFNPEVTVAVLAN-----KGAIAREMIARMVTMLESVPF 134

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           F    + +  +    E    S  + +   + + R  S                 ++ DE 
Sbjct: 135 FLQPGVKI-LNKGSIEFANDSKVVAAATSSSSIRGLSIN--------------LLYLDEF 179

Query: 201 SGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRYQIDTR 256
           +   D     +          +   I+TS    +   FY I+   + D   +K + I+  
Sbjct: 180 AFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMFYKIYESAVHDQSEYKHFLINWF 239

Query: 257 TVEGIDSGFHE---------GIISRYG------LDSDVARIEILGQFPQQEVNNFIPHNY 301
            V G D  + +              YG       ++ +    +LG   ++        ++
Sbjct: 240 DVPGRDEEWKKETIANTSEAQFEQEYGNSFLGTGNTLINSNTLLGLMSKE-------PDW 292

Query: 302 IEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
            ++ +            I   D++ G G D +  
Sbjct: 293 NKDGVKVYEKPKEGHTYITTVDVSKGRGIDYSTF 326


>gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM
           22836]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWI--MTS--NTRRL--NGWFYDIFNIPL--EDW 248
            DE S   +     ++            I  M    N  +      FY      +  +D 
Sbjct: 133 IDENSQITEKCWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDK 192

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVNNFIPHNYIEEAMS 307
              Q        +D  + E + +       ++R  +L G++ + + + ++   Y +    
Sbjct: 193 AFIQALVTDNPFVDKFYIENLKNL----DPISRARLLDGEW-EYDDDPYVLMQYEKIVDL 247

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
                    P  M  D+A  G D T +    G
Sbjct: 248 FTNSHVSGGPRYMTIDVARLGKDDTTIRIWEG 279


>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
 gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
          Length = 437

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 30/259 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AGRG GKT   A  +  +    P   I  +  S  + ++ +    S  L++ PH      
Sbjct: 58  AGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARSVMVEGESGLLAIAPH------ 111

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE---- 199
                    W       ++   +         +    P+   GP  +HG   + DE    
Sbjct: 112 ---------WARPAYAPALRRLTWPNGAVAMLFGAADPEGLRGPQFSHG---WADEIAKW 159

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           ASG     +  ++G     +P      T     L      +     +D    +  T   E
Sbjct: 160 ASGEA-AWHNLMMGMRLGRDPRVLVTTTPRPVPLV---RSLVARDGDDVVVTRGRTADNE 215

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +  GF   + + YG  + + R E+ G+  ++          IE+      +  +   +
Sbjct: 216 ANLAPGFVAAMTAGYG-GTRLGRQELDGELIEEVEGALWTRALIEQC-RVVHVPGVLTRV 273

Query: 319 IMGCD-IAGEGGDKTVVVF 336
           ++  D  A  GGD   +V 
Sbjct: 274 VVAVDPPASVGGDACGIVV 292


>gi|224535035|ref|ZP_03675589.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
 gi|224513696|gb|EEF84036.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
          Length = 379

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|216968428|ref|YP_002333693.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
           ACA-1]
 gi|216752682|gb|ACJ73366.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
           ACA-1]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P      M 
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           S++L   G      +    ++  + ++     +    D F   H      V+ DE +   
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        E +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P      M 
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDSNPD----LMN 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           S++L   G      +    ++  + ++     +    D F   H      V+ DE +   
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        E +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|216997755|ref|YP_002333847.1| phage terminase, large subunit, pbsx family protein [Borrelia
           afzelii ACA-1]
 gi|216752400|gb|ACJ73182.1| phage terminase, large subunit, pbsx family protein [Borrelia
           afzelii ACA-1]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFAQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L   +  E+   L   P      M 
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLVAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           S++L   G      +    ++  + ++     +    D F   H      V+ DE +   
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   K++     +         T N  R   ++        E +  ++  +         
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222

Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
               ++  YG  DS   + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246


>gi|195942518|ref|ZP_03087900.1| hypothetical protein Bbur8_06704 [Borrelia burgdorferi 80a]
 gi|312149990|gb|ADQ30051.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 16/157 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +E +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E+ M            I   D     GGD T +  
Sbjct: 271 ITEDYMFTSP--------IAYLDPTFSVGGDNTALCV 299


>gi|216969097|ref|YP_002333737.1| PBSX family phage termninase large subunit [Borrelia afzelii ACA-1]
 gi|216753027|gb|ACJ73621.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
           ACA-1]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYDFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
          Length = 469

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 38/183 (20%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------- 247
           + +EA    +    +++    +      W    N    +G  Y  F  P +         
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYY 162

Query: 248 ------------WKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                            +        + +    ++     YG + D              
Sbjct: 163 EDDEVYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  I   +++ A+    +         ++  D A  G D+  +  R G +IE    WS 
Sbjct: 212 GDALIQPEWVDAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271

Query: 351 KLI 353
             +
Sbjct: 272 GDV 274


>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 443

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 60/202 (29%), Gaps = 34/202 (16%)

Query: 79  KCAISAGRG-IGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLS 133
           + ++       GKT   A +   ++       P      IA    Q K+ +W  + K+  
Sbjct: 37  RFSVLVCHRRFGKT--VAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSVVWDYLKKFAG 94

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
            +           + H +    +L   +         IT      + PD   G +    +
Sbjct: 95  AI--------NGTTFHETELRCDLPNGA--------RITLLGA--DNPDRLRGIYLDGAV 136

Query: 194 AVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDI--FNIPLEDWKR 250
               DE +  P+ +  + I    ++      W M   T R +  FYD+  F     DW  
Sbjct: 137 L---DEMAQMPERVWGEIIRPALSD---RLGWAMFIGTPRGHNAFYDLYQFARSDPDWFC 190

Query: 251 YQIDTRTVEGIDSGFHEGIISR 272
                     +     +     
Sbjct: 191 AMYRASETGIVGRDELDAAKKE 212


>gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 540

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ V   + L   +        IP ++++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGILIPSDWVQAAVDA 306

Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             R  I      L    D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|308173233|ref|YP_003919938.1| PBSX terminase large subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307606097|emb|CBI42468.1| PBSX terminase (large subunit)) [Bacillus amyloliquefaciens DSM 7]
 gi|328553846|gb|AEB24338.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens TA208]
 gi|328911299|gb|AEB62895.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens LL3]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 30/198 (15%)

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
           + P      H  H   ++ +E S       K ++G       +   I T+N    + W Y
Sbjct: 105 DNPAKLKSIH--HISLIWIEECSEVKYEGFKELIGRLRHPELSLHMICTTNPVGTSNWTY 162

Query: 239 DIFNIPLEDWKR--------------------YQIDTRTVEGIDSGFHEGI--ISRYGLD 276
             F    +  +                     +         +   + + +  + +Y  D
Sbjct: 163 RHFFRDEQKKRFVLDDHTLYEKGTVVKGDTYYHHSTACDNLFLLKSYIKQLDSLRQY--D 220

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-IMGCDIAGEGGDKTVVV 335
            D+ RI   GQF    +  F     +E     E I  +  PL   G D   E     V+ 
Sbjct: 221 PDLYRIARKGQFGVNGIRVFPQFQVMEHTEVTERIAAIRRPLFRTGMDFGFEESYNAVIR 280

Query: 336 FRRGNIIEHIF---DWSA 350
                  + ++   ++  
Sbjct: 281 LAVDPDKKELYIFWEYYK 298


>gi|312201565|gb|ADQ44863.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312201416|gb|ADQ44721.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312201279|gb|ADQ44587.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
 gi|312201518|gb|ADQ44817.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312201145|gb|ADQ44458.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312148787|gb|ADQ31437.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|312147565|gb|ADQ30229.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224022952|ref|YP_002606442.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|223929838|gb|ACN24543.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224022912|ref|YP_002606399.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|223929322|gb|ACN24038.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|221316912|ref|YP_002533066.1| PBSX family phage terminase large subunit [Borrelia burgdorferi
           72a]
 gi|221237378|gb|ACM10217.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           72a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219722941|ref|YP_002474367.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692617|gb|ACL33836.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219723152|ref|YP_002474571.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692773|gb|ACL33988.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224022879|ref|YP_002606358.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|224590757|ref|YP_002640761.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|224593734|ref|YP_002641063.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|226246755|ref|YP_002776089.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
 gi|223929807|gb|ACN24513.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|224553954|gb|ACN55352.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|224554038|gb|ACN55434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|226201931|gb|ACO38514.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|195942876|ref|ZP_03088258.1| hypothetical protein Bbur8_08745 [Borrelia burgdorferi 80a]
 gi|312149906|gb|ADQ29970.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|195942593|ref|ZP_03087975.1| hypothetical protein Bbur8_07129 [Borrelia burgdorferi 80a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|225576150|ref|YP_002725083.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
 gi|225546143|gb|ACN92158.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|225575886|ref|YP_002724729.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
 gi|225546289|gb|ACN92300.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|221316807|ref|YP_002527718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           72a]
 gi|225576280|ref|YP_002725297.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
 gi|221237285|gb|ACM10136.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           72a]
 gi|225547220|gb|ACN93206.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|56561122|ref|YP_161529.1| hypothetical protein BGP243 [Borrelia garinii PBi]
 gi|226322231|ref|ZP_03797750.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|52696759|gb|AAU86094.1| hypothetical protein BGP243 [Borrelia garinii PBi]
 gi|226232381|gb|EEH31141.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497214|ref|NP_051333.1| hypothetical protein BB_M42 [Borrelia burgdorferi B31]
 gi|223987696|ref|YP_002601254.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225575916|ref|YP_002724772.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
 gi|225576096|ref|YP_002724941.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
 gi|6382235|gb|AAF07550.1|AE001578_21 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|223929409|gb|ACN24123.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225546099|gb|ACN92115.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
 gi|225546556|gb|ACN92560.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 13/165 (7%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ V   + L   +        IP ++++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306

Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
             R  I      L    D+A EG DK     R G ++E++ +WS 
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|225575989|ref|YP_002724899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
 gi|225546587|gb|ACN92590.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNISTFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|319950568|ref|ZP_08024477.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
 gi|319435762|gb|EFV90973.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
          Length = 536

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 6/172 (3%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  +A+     S +  +   + +  I  G G GKT L   +      +R G  +  I  
Sbjct: 200 ADIADAL-TREQSVLLRAVDALPRVEIRGGAGSGKTYL--ALEQARRLSRDGQRVALICY 256

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L    + W       +  E  +L +                  + +      
Sbjct: 257 SHG-LASYLRRVTNGWKRRERPAYVGEFHALGVEWGAPAGPDERIRSAESVRWWEEELPR 315

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              E  D   G       AV  DEA    D   + ++G   +    R  I+ 
Sbjct: 316 LMSELADGLPG--GRRFDAVIVDEAQDFADSWWQPVIGALRDRENGRLMIVG 365


>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
          Length = 1410

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 41  KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
           +G   +            Q E  E +  +    +  +    F+ +   G        G G
Sbjct: 809 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 868

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
           KT L    +   +   P    + IA +   L    WA E  KW   +P  +   +     
Sbjct: 869 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 925

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S     L++++    S +     + YS  +  + +G
Sbjct: 926 ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 963


>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1410

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 41  KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
           +G   +            Q E  E +  +    +  +    F+ +   G        G G
Sbjct: 809 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 868

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
           KT L    +   +   P    + IA +   L    WA E  KW   +P  +   +     
Sbjct: 869 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 925

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S     L++++    S +     + YS  +  + +G
Sbjct: 926 ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 963


>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
          Length = 1465

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 41   KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
            +G   +            Q E  E +  +    +  +    F+ +   G        G G
Sbjct: 864  EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 923

Query: 90   KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
            KT L    +   +   P    + IA +   L    WA E  KW   +P  +   +     
Sbjct: 924  KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 980

Query: 149  HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              S     L++++    S +     + YS  +  + +G
Sbjct: 981  ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 1018


>gi|224591489|ref|YP_002640832.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|224554623|gb|ACN56003.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|221641598|ref|YP_002527783.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|225622087|ref|YP_002725040.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|221237550|gb|ACM10383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|225546885|gb|ACN92880.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 88/308 (28%), Gaps = 46/308 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H             K   S G   GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEK 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K         +  +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D+F      +   ++ +EA+         ++            I 
Sbjct: 150 GK-----------NRDSFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKAIIIF 196

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
            +N      +F   F    + +K Y   T       + F E     Y       +  +L 
Sbjct: 197 DTNPEGPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVLY 255

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEH 344
           G++   E   F      E   +++     +   IM  D A   GGD T +        E 
Sbjct: 256 GEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICVLE-RAFEK 306

Query: 345 IFDWSAKL 352
            + +  + 
Sbjct: 307 FYAYIYQD 314


>gi|225576365|ref|YP_002725382.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
 gi|225546718|gb|ACN92719.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R    
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDGK 306


>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
 gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
          Length = 529

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 11/81 (13%)

Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI--------MGCDIAGEGGDKT 332
           + G F     +     IP  ++E A +R    +    L          G D+A  GGD T
Sbjct: 289 LYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKMDSYGLDVARGGGDNT 348

Query: 333 VVVFRRGNIIEHIFDWSAKLI 353
           +   R G   ++      K  
Sbjct: 349 IGFARYGYWYDNPNVLEGKDS 369


>gi|11497347|ref|NP_051454.1| hypothetical protein BBN43 [Borrelia burgdorferi B31]
 gi|6382368|gb|AAF07680.1|AE001581_22 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKIYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 85/293 (29%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H             K   S G   GKT L +++++  +    S    
Sbjct: 46  TDKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYTFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|224590701|ref|YP_002640718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
 gi|224554531|gb|ACN55913.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           CA-11.2a]
          Length = 450

 Score = 44.0 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|218202781|ref|YP_002364699.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
 gi|218164309|gb|ACK74373.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
          Length = 450

 Score = 44.0 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|118470437|ref|YP_885678.1| hypothetical protein MSMEG_1288 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171724|gb|ABK72620.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 549

 Score = 44.0 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 5/151 (3%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            + + N+   + +  +  G G GKT L   M       + G  +  +  S   L + L  
Sbjct: 209 QAVILNAARLLNRIEVRGGAGSGKTFL--AMEQARRLAQDGQRVALVCYSHG-LASYLER 265

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             + W       +  E  +L +                  + +     +   E       
Sbjct: 266 VTATWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEQTVQFWEHDLPSQMTELAAQLEP 325

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            H     AV  DEA    D     +LG   +
Sbjct: 326 GHRFD--AVVVDEAQDFADAWWDPLLGALHD 354


>gi|291563675|emb|CBL42491.1| phage uncharacterized protein (putative large terminase),
           C-terminal domain [butyrate-producing bacterium SS3/4]
          Length = 544

 Score = 44.0 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 38/274 (13%)

Query: 6   STDQKLEQE--LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
            TD++L     LH+ ++ A     F+++++    W  +  P + F  P     E M  V 
Sbjct: 59  ETDKELRSLFMLHKKVLLAAAPFDFESYLLYV-EWERE--PDKKFYVPR---REVMHPVV 112

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                 +++    +    IS   G GK+TL  + + W++   P    +  A+S    ++ 
Sbjct: 113 QAMQDLIDDRLDLL---TISMPPGTGKSTLGIFFLSWVMGRFPDSQSLASAHSGMLTRSF 169

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                  +  +    + +      +  +   ++     +    +  T+TCR  +     +
Sbjct: 170 ---YDGVYQIITDSEYLWADVFPGVKMAATNSKEETIDLHKKHRFSTLTCRAINA----S 222

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             G      +   +D  SG        I    ++   ++ W   +N         D+ + 
Sbjct: 223 LTGATRCDKILYADDLCSG--------IEEAMSKERLDKLWSAYTN---------DLKSR 265

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
             E  K   I TR            + ++YG DS
Sbjct: 266 KKEGAKEIHIATRWSVH---DVIGRLENQYGGDS 296


>gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1428

 Score = 44.0 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 33/256 (12%)

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             + Q   T W E+    +          +  +   +   A  L+ + G   +       
Sbjct: 669 PDDRQRVTTTWREIFASQAAGSFEFRALCRDGAYRWTLTRAVPLKDASGQVQEWVGTDGD 728

Query: 175 TYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            +   +  +        + +A+       T D I    LG  T    +  + +       
Sbjct: 729 IHESRQASEAIRLQEERYRLAML-----ATQDAIWDWDLGADTAEWSDGAYRLFG----- 778

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEILGQFPQQE 292
              + D        W + +I     E + +     I S+    SD  R     G + +  
Sbjct: 779 ---YDDAERADTGAWWKSKIHPDDRERVTTSIKHIIESQEHRWSDEYRFARADGSYAEVT 835

Query: 293 VNNF------------------IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
              F                  I       A  R + + L   L  G  +A E   KT +
Sbjct: 836 DCGFVIRDTEGQALRMVGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGL 895

Query: 335 VFRRGNIIEHIFDWSA 350
             R  N ++ +   S 
Sbjct: 896 ATRSDNALQLLGIGSG 911


>gi|219723105|ref|YP_002474527.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694031|gb|ACL34563.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 450

 Score = 44.0 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L           +   +N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRLRCAQETIIF--DTNPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +  Y+  T     +   F +     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNVATFNTYKFTTYDNVLLSKEFIKTQEKLY-KDIPAYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMDRVDDK 306


>gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70]
          Length = 519

 Score = 44.0 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS-- 307
           +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+   
Sbjct: 229 FTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAH 286

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
            +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 287 IKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEK 340


>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
          Length = 394

 Score = 44.0 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 24/169 (14%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           + +EA    +    +++    +      W    N    +G  Y  F  P   +K   ID 
Sbjct: 44  WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKP---YKAI-ID- 96

Query: 256 RTVEGIDSGFHEGIISRYGL----DSDVARIEILGQFPQQE-----VNNFIPHNYIEEAM 306
                   G++E      G     D+     E+     + E      +  I   ++E A 
Sbjct: 97  ------KQGYYEDDEVYVGKVSYLDNPWLPAELKNDAQKGECDANYEDALIQPEWVEAAT 150

Query: 307 S--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
               +         ++  D A  G D+  +  R G +IE    WS   +
Sbjct: 151 DAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDV 199


>gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218]
          Length = 540

 Score = 44.0 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS-- 307
           +    R     D  ++     +  +D+ V   + L   +        IP  +++ A+   
Sbjct: 250 FTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAH 307

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
            +         +   D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 308 IKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEK 361


>gi|203288918|ref|YP_002223912.1| bsr protein [Borrelia duttonii Ly]
 gi|201084425|gb|ACH94009.1| bsr protein [Borrelia duttonii Ly]
          Length = 399

 Score = 44.0 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 85/278 (30%), Gaps = 45/278 (16%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--------RPGMSIICIANSETQL 120
             NN N  I    I++    GKT L        + T        R G +   + NS+  L
Sbjct: 6   EKNNQNKVILSGGIAS----GKTFLA---CYLFLKTLLKNRHLYRKGTNNFILGNSQKAL 58

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                 E++         +  ++  +  + +  Y E+    + +           Y  ++
Sbjct: 59  ------EINVIEQFEDLANMLKIPFVPKYSNRSYFEIDSLRVNL-----------YGGDK 101

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
              F     ++   ++ +EA+       K  L     + P      T N      +F   
Sbjct: 102 IRDFKRFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIVFDT-NPDHPEHYFKTD 159

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPH 299
           +      +  Y   T   E I   F +     Y  D    +  + LG++       F   
Sbjct: 160 YIDKNTIYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASVLLGEWVANNDAIFRNI 218

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
           N IE        D  +   I   D A   GGD T +  
Sbjct: 219 NIIE--------DYDFKSPIAYLDPAYSSGGDNTSLCV 248


>gi|328882738|emb|CCA55977.1| DNA or RNA helicases of superfamily II [Streptomyces venezuelae
           ATCC 10712]
          Length = 597

 Score = 44.0 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 20  PWGTAGKL-------RAWQQGAME--------KYIQEQPRDF-LAVATP-GAGKTTFALT 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 63  LASWLLHHHVVQQITVVAPTEH---------LKKQWAAAAARIGIKLD------------ 101

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 102 -PDYSAGPLSKEYDGVAITYAGVGVRPM--LHRNRSEQRKTLVILDEIHHAGDSKSWGEA 158

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178


>gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 491

 Score = 43.6 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 94/329 (28%), Gaps = 62/329 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSI 110
             WQ+  +            + +P     AI   RG+GKT + A + L+ +   P G  I
Sbjct: 51  RPWQMGMLR--------PFLDPDPRPLVGAIMGPRGLGKTGIFAALGLYELFCGPDGNEI 102

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A  E      L           P     E+           A +    + +  K  T
Sbjct: 103 PIVAVDERMAGRLL----------KPAAQMVELND----ELAARAVVYRDRIEVPGKRST 148

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFF-------- 215
           +T      +R +               DE          ++L       G          
Sbjct: 149 LTALPAEAKRIEGL-----GTWTLALADELGEIDPDTWSTLLLGAGKLDGAMALGIGTPP 203

Query: 216 ---TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-RTVEGIDSGFHEGIIS 271
              T +  +      +N       FY+      + ++ + +     +E  +    + +  
Sbjct: 204 NRETSVLTDLREACRANPDDRTMAFYEF---SADGFEHHPVSCVHCLELANPQLDDLLSR 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNY---IEEAMSREAIDDLYAPLIMGCDI--AG 326
                + + +    G++ ++ +   +  N    ++             P+  G D+  A 
Sbjct: 261 D--RATALLKQTTEGEYRRKRLCQVVTTNESPFVDA--DTWDGLKAPHPVPDGADVVIAL 316

Query: 327 EG---GDKTVVVFRRGNIIEHIFDWSAKL 352
           +G    D T +V      + H     A  
Sbjct: 317 DGSLKDDSTALVVGTVGKVPHFDRLDAWE 345


>gi|247553003|gb|ACS94840.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 43.6 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|219807285|ref|YP_002477581.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
 gi|224797061|ref|YP_002642778.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225571759|ref|YP_002724342.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|219692550|gb|ACL33771.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
 gi|223929616|gb|ACN24327.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225547179|gb|ACN93166.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 43.6 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|9631142|ref|NP_047924.1| gp33 [Streptomyces phage phiC31]
 gi|3947452|emb|CAA07103.1| gp33 [Streptomyces phage phiC31]
          Length = 519

 Score = 43.6 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 91/315 (28%), Gaps = 31/315 (9%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
            WQ E +    V                 +   R  GK+T+ A +ML+ +    G     
Sbjct: 51  PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           II  AN   Q +     + +K +     +               Y +   + +  D+   
Sbjct: 111 IIAAANDRNQARMVF--DSAKQMVNASPKLAAVCDVQRDVIR--YKDNTYRVVSADAGRQ 166

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                         F    +          A      +   I     + +     +    
Sbjct: 167 QGLNPAAVSLDEYAFSKHSDLFDALTLGSAARN--QPMFLIISTAGPDPDGPFAALCEQG 224

Query: 230 TRRLNGW------FYDIF---------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
            R  +G       FY  +         ++  + W+     +  +  ++    +    R  
Sbjct: 225 ERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACN-PSYDI--LNPDDFKAAAQRST 281

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
             S   RI  L QF +     ++PH   +   + +   +    +++G D + +G    +V
Sbjct: 282 EAS--FRIYRLSQFVRGAS-TWLPHGLWDSLAADDDPLEPGDEVVLGFDGSWKGDSTALV 338

Query: 335 VFR-RGNIIEHIFDW 348
             R R   +  +  W
Sbjct: 339 ACRIRDLKVFVLGHW 353


>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
          Length = 443

 Score = 43.6 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 94/298 (31%), Gaps = 58/298 (19%)

Query: 81  AISAGRGIGKTT-LNAWMMLWLIST--RPGMSI-------ICIAN--SETQLKNTLWAEV 128
           A+  GR  GKT  L++  + +  S   RPGM I       I  A      ++ + L  E+
Sbjct: 27  AVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDIELGGRVGIFTAEYRQYQEIYDKLE-EI 85

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                +LP +  F  Q   L        LL+    ID           + +      G  
Sbjct: 86  -----LLPLKKSFSRQEKRL--------LLKNGGKIDFW--------VTNDNKLAGRGRE 124

Query: 189 NTHGMAVFNDEASGTPDI-----INK-SILGFFTELNPNRFWIMTSNTRRLNGWFYD-IF 241
                 +  DEA+ T        I   SI           +   T +      +FY    
Sbjct: 125 YE---IILIDEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICH 181

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP-HN 300
           N  L  +  +   T +   +     E    R   D  V R E L +F      +      
Sbjct: 182 NKDLG-FHEHHAPTSSNPFVPPEELEK--ERQNNDPRVFRQEFLAEFVDWSAASLFDVRK 238

Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348
           + E     +     ++   +    D A +GG   D T VV+     R G     I DW
Sbjct: 239 WFEGENQDQPVDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDW 296


>gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
 gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
          Length = 1580

 Score = 43.6 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 67   HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLK 121
              N+ NS        +    G GKT   A ++L  + +      P   I   + +   + 
Sbjct: 1079 QENIFNSIIKRRLQLVRGPPGTGKTHFLALIVLIFMESYKRLGKPF-RIAITSFTHNAID 1137

Query: 122  NTLWA------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            N L        E S  +    +   F+ Q+            L      + +H+ +   +
Sbjct: 1138 NLLIRIASLKKEYSTSVGQDINFPLFKKQTKLSEDLKLNKIQLFDKKEFEREHFCVGATS 1197

Query: 176  YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +S    D        +   +  DEAS     I  +I       +  R  +   N
Sbjct: 1198 WSLSNMD------YENFDLLIIDEASQLSSYI-GAIPFSRLNKDTGRVIVCGDN 1244


>gi|195942125|ref|ZP_03087507.1| hypothetical protein Bbur8_04585 [Borrelia burgdorferi 80a]
          Length = 450

 Score = 43.6 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 42/304 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
           +F +    QL  ++  +V      NN    I    I++    GKT L  ++ L  +    
Sbjct: 36  NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIANK 90

Query: 106 ----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                  +   I NS+  ++  +  +  K   +       ++  +  H +  Y  +    
Sbjct: 91  NLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNSYILIDSLR 144

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           + +                 + F G   ++   +F +EA+       + +L         
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                T N      +F   +   +  +K Y   T     +  GF E     Y  D    +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYK 250

Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
             + LG++     + F   N  +        D ++   I   D A   GGD T +    R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSSIAYLDPAFSVGGDNTALCVMER 302

Query: 338 RGNI 341
             + 
Sbjct: 303 VDDK 306


>gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight]
          Length = 614

 Score = 43.6 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 45/230 (19%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR I +D++ E  +   +   E    F++F          G     F      Q +  + 
Sbjct: 25  PRTIPSDKRTELAMMLAITFKE----FRDFAY-------VGMRFLGFELTDM-QADIADY 72

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ-- 119
           +       +           ++A RG  K+TL A   +W +       ++ ++  E Q  
Sbjct: 73  MQYGPRKKM-----------VAAQRGEAKSTLAALYSVWRLIQDQRCRVLILSGGEQQAS 121

Query: 120 -LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            +   +   +  W    P   W +  S     + + A  +   +    K  ++ C   + 
Sbjct: 122 EVATLVIRLIETW----PLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACIGVTA 177

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               +  G                 PD I ++     T+    +   ++ 
Sbjct: 178 ----SLQGKRADLL----------IPDDI-ETTKNGMTQTEREKLLTVSK 212


>gi|219723219|ref|YP_002474654.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692798|gb|ACL34012.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|312148753|gb|ADQ31404.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 43.6 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 IT--------ADYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
 gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
          Length = 450

 Score = 43.6 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 83/297 (27%), Gaps = 55/297 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRP 106
              Q E +  ++ H             K   S G   GKT L +++++  +         
Sbjct: 46  TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSLYER 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K         +  +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D F      +   ++ +EA+         ++            I 
Sbjct: 150 GR-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKSIIIF 196

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
            +N      +F   +    + +K Y   T       + F E     Y       +  +L 
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255

Query: 286 GQFPQQEVNNFIPHNYI--EEAMSREAIDD---LYAPLIMGCDIAGE-GGDKTVVVF 336
           G+             +I  E A+  E I +    +   IM  D A   GGD T +  
Sbjct: 256 GE-------------WILNESALFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAICV 299


>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
 gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
          Length = 272

 Score = 43.2 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +      W +  N   +  + +  F   P E     +
Sbjct: 131 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 188

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
           I+      +     + I +    D D  +    G  P+ + +   I  ++IE A+   + 
Sbjct: 189 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 247

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTV 333
              +      +G D+A  G DK  
Sbjct: 248 LNFEPSGRKRIGFDVADSGTDKCA 271


>gi|120402158|ref|YP_951987.1| hypothetical protein Mvan_1146 [Mycobacterium vanbaalenii PYR-1]
 gi|119954976|gb|ABM11981.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
          Length = 551

 Score = 43.2 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 44/171 (25%), Gaps = 5/171 (2%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +     S + ++   + +  I  G G GKT L   M       R G  +  +  S
Sbjct: 199 EDAADILTEHQSVILDAIRLLNRVEIRGGAGSGKTFL--AMEQARRLARDGQRVALVCYS 256

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L + L    + W       +  E   L                    + +       
Sbjct: 257 HG-LASYLERITAAWNRRQQPAYVGEFHDLGKRWGAPAGPDESLRTEQTVQFWEHDLPAQ 315

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
             E              A+  DEA    D     +L    +      ++ T
Sbjct: 316 MTEL--AMQLDDGQRFDAIVVDEAQDFADAWWDPLLAALKDDETGGLYVFT 364


>gi|154489097|ref|ZP_02029946.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
           L2-32]
 gi|154083234|gb|EDN82279.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
           L2-32]
          Length = 1055

 Score = 43.2 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 68/235 (28%), Gaps = 32/235 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           +   I +     + L +          FK +     P     KP+E  SQ    Q   M+
Sbjct: 194 LSEEIESQISESKPLTD-AWLKLYEEDFKKYA----PQRPNRKPIEKTSQSQTIQPNAMQ 248

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
                  +          +  I +  G GKT L+A+ +                    Q+
Sbjct: 249 V--EALMNLAQLRKQGESRAIIVSATGTGKTYLSAFDV-------------------RQV 287

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K      +++    +  +     Q +   P          S   D K+   T +T S  R
Sbjct: 288 KPNRMLYIAQ-QEQILKKAEESFQKVLGCPKSELGLFSGGSKESDRKYVFATVQTMS--R 344

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           P+T           +  DE         +S         PN    MT+   R +G
Sbjct: 345 PETLAQFDADEFDYILVDE---VHHAAAESYKRVIDHFQPNFMLGMTATPERTDG 396


>gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
           49242]
 gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
           49242]
          Length = 323

 Score = 43.2 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 48/260 (18%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPG---------MSIICIANSETQLKNTL------WAEVS 129
           GR  GK ++ + ++ W  +   G            +C+A  + Q +  L      +AE+ 
Sbjct: 67  GRRAGKDSIASAIVTWSAAMFDGADRLRPGERALCLCLACDKDQARIVLSYVRAYFAELE 126

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
              +M+            L  S      +  +     +  TI C    E           
Sbjct: 127 PLRAMVTRE-----TKDGLELSNGVDIYVGVNDFRAVRGRTILCAVLDE----------- 170

Query: 190 THGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN----IP 244
              +A + DE S +PD+ + +++      L P    I  S+  R  G  +          
Sbjct: 171 ---IAYWRDENSASPDLELYRALKPGMATL-PEAMLIGISSPYRRAGLLHAKHRQAYGRD 226

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
            +              +D    +  ++    D   AR E L +F + +++ F+  + IE 
Sbjct: 227 GDTLVIRAPSAVMNPTLDQAEIDQAMA---EDPAAARAEWLAEF-RDDISGFLGLDLIEA 282

Query: 305 AMSREAIDDL----YAPLIM 320
           A+    +       YAP IM
Sbjct: 283 AVDPTIVTRPPRGCYAPWIM 302


>gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 539

 Score = 43.2 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                 F DEA+     +   I    ++    R  + + N   +N  F            
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIS 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ +    E+   +        IP  +++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRKECEK--IDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             +         +   D+A EG DK     R G ++  + +WS K
Sbjct: 307 HIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGK 351


>gi|224022826|ref|YP_002606317.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|223929278|gb|ACN23995.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|224020463|ref|YP_002601168.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
 gi|223929158|gb|ACN23879.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           64b]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219869985|ref|YP_002474251.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692877|gb|ACL34089.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|195942413|ref|ZP_03087795.1| hypothetical protein Bbur8_06149 [Borrelia burgdorferi 80a]
 gi|312201120|gb|ADQ44434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
 gi|312201339|gb|ADQ44646.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219499179|ref|YP_002455350.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
           ZS7]
 gi|218164189|gb|ACK74256.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
           ZS7]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQAQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|11497404|ref|NP_051512.1| hypothetical protein BB_Q50 [Borrelia burgdorferi B31]
 gi|6382425|gb|AAF07735.1|AE001584_32 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497152|ref|NP_051291.1| hypothetical protein BB_R45 [Borrelia burgdorferi B31]
 gi|6382173|gb|AAF07489.1|AE001577_3 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|11497247|ref|NP_051377.1| hypothetical protein BB_O44 [Borrelia burgdorferi B31]
 gi|6382268|gb|AAF07582.1|AE001579_11 conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
 gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
           ND132]
          Length = 428

 Score = 43.2 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 22/144 (15%)

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R       IA    Q K  +W E+ ++                L          E     
Sbjct: 50  RDDWRGAYIAPLYRQAKTVVWDELKRYC------------GFGLDGCTVKFNETELRADF 97

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRF 223
           D+       R +    PD+  G +      V  DE +  P  +  + I    ++    + 
Sbjct: 98  DNGSRI---RLFGANNPDSLRGMYLDG---VVFDEVAQMPLRVWTEVIRPALSD---RKG 148

Query: 224 WIMTSNTRRLNGWFYDIFNIPLED 247
           W M   T R     Y+I+     D
Sbjct: 149 WAMFIGTPRGKNALYEIWEKGKTD 172


>gi|247553170|gb|ACS94899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|11496928|ref|NP_045704.1| hypothetical protein BBA31 [Borrelia burgdorferi B31]
 gi|195942693|ref|ZP_03088075.1| hypothetical protein Bbur8_07694 [Borrelia burgdorferi 80a]
 gi|224796822|ref|YP_002642504.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|224796893|ref|YP_002642572.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|225573840|ref|YP_002724449.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
 gi|226234883|ref|YP_002775758.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|2690260|gb|AAC66261.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|221237191|gb|ACM10059.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|224554443|gb|ACN55827.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|225546432|gb|ACN92439.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
 gi|226202357|gb|ACO38016.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|247552767|gb|ACS94776.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi]
 gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSTLIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  +    +  + LG++     + F   N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMDRVDDK 306


>gi|295836865|ref|ZP_06823798.1| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
 gi|197699526|gb|EDY46459.1| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
          Length = 596

 Score = 42.8 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 20  PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 63  LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 101

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 102 -PDYSAGPVSKEYVGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178


>gi|224591529|ref|YP_002640858.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
 gi|224554111|gb|ACN55505.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   VF +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALVFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
 gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
          Length = 460

 Score = 42.8 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 36/253 (14%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P++   +   W+++ +     H    +N++   I      +G G GKT   A   + L 
Sbjct: 26  APVKKERKSRTWRIKTLP----HQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLA 79

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              PG   I    +   L   ++ E+ K L+    +  F  Q    H             
Sbjct: 80  ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------ 127

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKS---ILGFFTEL 218
            I  +   I C   S E     +G +         DE  +  PDI  ++   +LG     
Sbjct: 128 RIAGQMTRIICD--SMENYTRLIGVNAA---WCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182

Query: 219 NPNRFWIMTSNTRRLNGW--FYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           N  +  I++       G+   Y IF +   +  +  +  T     +   + + + ++Y  
Sbjct: 183 NVRQMVIVS----TPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQYPP 238

Query: 276 DSDVARIEILGQF 288
           +  +    + G+F
Sbjct: 239 E--LIEAYLNGEF 249


>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
          Length = 460

 Score = 42.8 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 36/253 (14%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P++   +   W+++ +     H    +N++   I      +G G GKT   A   + L 
Sbjct: 26  APVKKERKSRTWRIKTLP----HQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLA 79

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              PG   I    +   L   ++ E+ K L+    +  F  Q    H             
Sbjct: 80  ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------ 127

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKS---ILGFFTEL 218
            I  +   I C   S E     +G +         DE  +  PDI  ++   +LG     
Sbjct: 128 RIAGQMTRIICD--SMENYTRLIGVNAA---WCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182

Query: 219 NPNRFWIMTSNTRRLNGW--FYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           N  +  I++       G+   Y IF +   +  +  +  T     +   + + + ++Y  
Sbjct: 183 NVRQMVIVS----TPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQYPP 238

Query: 276 DSDVARIEILGQF 288
           +  +    + G+F
Sbjct: 239 E--LIEAYLNGEF 249


>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 471

 Score = 42.8 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++        +  W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTI-RKTFSEIWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 428

 Score = 42.8 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 64/260 (24%), Gaps = 43/260 (16%)

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           ++R       IA    Q K  +W E+ ++  +       +     L              
Sbjct: 48  TSRTDWRGAYIAPLYKQAKTVVWDELKRYCGLGLDGCTVKFNETEL-------------- 93

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPN 221
                      R +  E PD+  G +         DE +  P  +  + I    ++    
Sbjct: 94  -RADFDNGARIRLFGAENPDSLRGMYLDGA---VFDEVAQMPHRVWTEVIRPALSDRMGW 149

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
             +I     R  N   Y ++       DW            I+ G           +   
Sbjct: 150 AMFI--GTPRGKNA-LYRLWQDARRDPDWFAAMYRASQTGIIEPGELAAAAREMSPE--E 204

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-------LIMGCDIAGEGGDKT 332
              E    F       +      E           + P         +G        D T
Sbjct: 205 YEQEFECSFTAAIRGAYFSALIGEADKGGRITKVPHDPSLPVHTAWDLGM------SDST 258

Query: 333 VVVF---RRGNIIEHIFDWS 349
            + F   R GN    I D+ 
Sbjct: 259 AIWFVQARPGNA-FAIVDYY 277


>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
          Length = 507

 Score = 42.8 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 15/205 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GR +GK+ + +   L    T  G   +  A  +  L + +  E+   L   P        
Sbjct: 55  GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDSIIE-EIEYQLDTNPDLMNSIAV 113

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           +    P               S  Y      Y     D+F   H      V+ DE +   
Sbjct: 114 TKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYG----DSFRSLHVGR---VWVDEGAWLT 166

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +   K++              + S    L +  +Y +     + +  ++  +        
Sbjct: 167 ERAWKALRQCLKTGG---ILRIYSTPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTE 221

Query: 264 GFHEGIISRYG-LDSDVARIEILGQ 287
                ++  YG  DS   + E+ G+
Sbjct: 222 DRESELLEFYGGRDSSGWQHEVAGE 246


>gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
 gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
          Length = 501

 Score = 42.4 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMSRE 309
           +    R+    D  ++     +  +D+ V   + L   +        IP  +++ A+   
Sbjct: 213 FTFHWRSDPRKDDEWYRKECEK--IDNPVVVAQELDLNYQASAEGILIPSEWVQAAIDAH 270

Query: 310 AIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
              D       +   D+A EG DK     R G +++ + +WS +
Sbjct: 271 IHLDIQPSGARLGAMDVADEGRDKNGFAIRYGFLLQDVKEWSGE 314


>gi|51557524|ref|YP_068358.1| DNA packaging terminase subunit 1 [Suid herpesvirus 1]
 gi|40253983|tpg|DAA02178.1| TPA_exp: UL15 protein [Suid herpesvirus 1]
          Length = 735

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 22/152 (14%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSMLPHRHWFEMQS 145
           GKT     ++   ++T  G+ +   A+     +       A + +W       H      
Sbjct: 277 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPVFEEIHARLRRWCRDARVDHVKGENI 336

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P G  + ++                  S    +   G        +F DEA+    
Sbjct: 337 TVTFPDGARSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 377

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              ++ILGF  + +    ++ ++NT + +  F
Sbjct: 378 DAVQTILGFMNQASCKIIFVSSTNTGKASTSF 409


>gi|28395422|gb|AAO38880.1| UL15 [Suid herpesvirus 1]
          Length = 753

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 22/152 (14%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSMLPHRHWFEMQS 145
           GKT     ++   ++T  G+ +   A+     +       A + +W       H      
Sbjct: 293 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPVFEEIHARLRRWCRDARVDHVKGENI 352

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P G  + ++                  S    +   G        +F DEA+    
Sbjct: 353 TVTFPDGARSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 393

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              ++ILGF  + +    ++ ++NT + +  F
Sbjct: 394 DAVQTILGFMNQASCKIIFVSSTNTGKASTSF 425


>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
 gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 18/159 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANS-----------ETQLKNTLWAEVSKWLSML 135
           G GKT      +L L+S  P   I+  A S            +  ++ L+   +      
Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H   +     + +G ++  L   M    K +     T         +G    H   +
Sbjct: 540 QVPHEL-LPFTYQNATGHFSVPLLSRM----KRFRAVVTTCVSANIIAGIGIPRGHYTHI 594

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           F DEA    +   + ++   T  + N   +++ + ++L 
Sbjct: 595 FVDEAGQATEP--EVMIAIKTMADMNTNVVLSGDPKQLG 631


>gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
           49242]
 gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
           49242]
          Length = 439

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 37/259 (14%)

Query: 82  ISAGRGIGKTTLNA-WMMLWLI-----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A W+    +      TRP   I  I  +   ++  +   VS  L++ 
Sbjct: 54  ILGGRGAGKTRAGAEWVKGLALGRPHFCTRPVSRIALIGETAADVREVMIEGVSGLLAIH 113

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGM 193
             R     +S                         +  + +S E P++  G   H     
Sbjct: 114 GKRDRPRWESSR---------------RRLVWDSGVVAQAFSAEDPESLRGPQFHAA--- 155

Query: 194 AVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
             + DE +           +       +  R  + T+   R      D+   P     R 
Sbjct: 156 --WCDELAKWRYARETWDMLQFGLRLGDWPRQLVTTTP--RPTPLLKDLIAHPATVLTRA 211

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
            +       +   F E ++++Y   + + R E+ G+  ++  +     + IE   SR A 
Sbjct: 212 -LTRENAANLAPSFLESVVAQY-AGTRLGRQELDGEIVEERKDALWTRDLIEA--SRVAD 267

Query: 312 DDLYAPLIMGCD-IAGEGG 329
               A +++  D  A  G 
Sbjct: 268 APRLARIVVAVDPPASFGK 286


>gi|298708865|emb|CBJ30823.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1899

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 22/181 (12%)

Query: 71  NNSNPTIFKCAISAGRG-----------IGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           N+S  T  +  ++   G            GKT      +L L+  RP   I+ +  S+T 
Sbjct: 755 NDSQRTAVRDIVTGAHGQVPYIIFGPPGTGKTCTVIESILQLVKLRPECRILAVGPSDTS 814

Query: 120 LKNTLWAEVSKWLSM--LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--- 174
             + +   +S+ +S   L   +W++  +  +HP+       + + G+     TIT +   
Sbjct: 815 -ADVICERLSRHMSRDQLVRINWWQRLTAGVHPNILSYCPQDSNRGMFVPPSTITHQVVV 873

Query: 175 -TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            T       + +G    +   +F DE+S       ++ L            I+  + R+L
Sbjct: 874 CTCGTAGMLSVLGVDENYFTHIFVDESSN----AMETELLVPLSYAGRAQIILCGDPRQL 929

Query: 234 N 234
            
Sbjct: 930 G 930


>gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
 gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 73/259 (28%), Gaps = 19/259 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A  G G+ +  +W ++         +I     +   L+     E+   L+        +
Sbjct: 23  RAAHG-GRGSAKSWSVV-------DAAIFHTVTTPR-LRVVFLREIMANLTESSLELVRK 73

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                     ++ E+     G+  +        +   +P+               +EA  
Sbjct: 74  RLEHFGLLGSYFREVNGTFQGLGGQKIMFIG-LWKGGKPEGIKSLEGAG--LTILEEAQE 130

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   +L        +  W +  N          F+     P       +I+     
Sbjct: 131 VRQASLDVLLPTILRTAISELWAIW-NPRLDTDPIDVFFRGPVKPKGA-IVRKINYDQNP 188

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP 317
                  E +   +  D   A    LG +             ++EA    R A +  +  
Sbjct: 189 HFPDALRELMELDFSKDKLRAAWIWLGGYMPSVQGAIWNREGLDEAWREGRHAPEGSWGR 248

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           +++G D +G G D  +VV 
Sbjct: 249 VVVGVDPSGGGDDVGIVVA 267


>gi|302521533|ref|ZP_07273875.1| involving differentiation [Streptomyces sp. SPB78]
 gi|333024829|ref|ZP_08452893.1| putative differentiation protein [Streptomyces sp. Tu6071]
 gi|302430428|gb|EFL02244.1| involving differentiation [Streptomyces sp. SPB78]
 gi|332744681|gb|EGJ75122.1| putative differentiation protein [Streptomyces sp. Tu6071]
          Length = 596

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 20  PWGTAGKL-------RAWQEGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 63  LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 101

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 102 -PDYSAGPVSKEYVGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178


>gi|3318666|gb|AAC26153.1| BBA31 homolog [Borrelia burgdorferi 297]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + + G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERYRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
 gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
          Length = 466

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 47/302 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P+ WQ + ++ +       +   +   +          GKT +     LW +    G +
Sbjct: 35  SPYPWQEKLIKDIFAVNDDGLWTHSKFGYAVPRRN----GKTEIVYMAELWFLM--DGKN 88

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           II  A+  +   +  + ++ K+L  +      + +S+            ++ + +     
Sbjct: 89  IIHTAHRISTSHS-SFKKLKKYLEKMGLVDKVDFKSIKAK--------GQEMIELIKTGG 139

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            I  RT +E       G      + V  DEA    +    ++    T+ +     +  + 
Sbjct: 140 VIQFRTRTETG-----GLGEGFDLLVI-DEAQEYTEGQESALKYTVTDSDNPMILMCGTP 193

Query: 230 TRRLNG--WFYD------IFNIPLEDWKRYQIDTRTVE-------GIDSG-----FHEGI 269
              ++G   F                W  + +   T           +           +
Sbjct: 194 PTLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYKTNPSMGYKLRERAV 253

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
               G D     I+ LG + +    + I   ++  + +    +  L   L +G      G
Sbjct: 254 EEEIGPDETDFNIQRLGYWVKYNQKSVISKLDW--DRLKLTRLPSLVGKLHVGI---KYG 308

Query: 329 GD 330
            D
Sbjct: 309 ND 310


>gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357]
          Length = 503

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 21/224 (9%)

Query: 136 PHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
           P   +++ +             W  +     M ++        +  + +           
Sbjct: 141 PKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GD 195

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
                F DEA+     +   I    ++    R  + + N   +N  F             
Sbjct: 196 RTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIPV 249

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
           +    R+    D  ++     +  +D+ V    E+   +        IP  +++ A+   
Sbjct: 250 FTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAH 307

Query: 310 AIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                      +   D+A EG DK     R G ++  + +WS K
Sbjct: 308 IRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351


>gi|226246423|ref|YP_002775825.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
 gi|226201818|gb|ACO38403.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSTDFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|224796679|ref|YP_002641707.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|224553883|gb|ACN55283.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++       NN +  IF   I++    GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K  S+        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
                          D F      +   ++ +EA+    + + + I              
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T N      +F   +    + +K Y   T       + F +     Y       R  +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254

Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            G++   E        + E   +++     +   IM  D A   GGD T +  
Sbjct: 255 YGEWILNE-----SMLFNEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299


>gi|218780689|ref|YP_002432007.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762073|gb|ACL04539.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 20/145 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           IS G G GKTT+ A ++  L+S   G   SI   A +       L + + K LS L    
Sbjct: 160 ISGGPGTGKTTIAARIIRLLLSLADGRAPSIAITAPTGKAAARLLES-LGKELSRLGVPP 218

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +  +    +    +  +   ++ + P             +  DE
Sbjct: 219 G---------MEDAIPKRAKTIHRLMGARFNSSQFIHNADNPINAD--------ILIVDE 261

Query: 200 ASGTPDIINKSILGFFTELNPNRFW 224
           AS     +   +L    +       
Sbjct: 262 ASMVELSLMARLLEALPDHGKLILL 286


>gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638]
 gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638]
          Length = 539

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +N  F            
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
            +    R+    D  ++     +  +D+ V    E+   +        IP  +++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306

Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                       +   D+A EG DK     R G ++  + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351


>gi|320010525|gb|ADW05375.1| type III restriction protein res subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 593

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 18  PWGTAGKL-------RAWQQGAME--------KYIQEQPRDF-LAVATP-GAGKTTFALT 60

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 61  LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 99

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 100 -PDYSAGPVSKEYHGVAITYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 156

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
               F      R   +T    R
Sbjct: 157 CQEAF--DPATRRLALTGTPFR 176


>gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602]
 gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602]
          Length = 539

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 20/215 (9%)

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
           GW A+     M ++        +  + +                F DEA+     +   I
Sbjct: 162 GWSAKKHAPYMRVEFPTTGAVLKGEAGDNIGR-----GDRTTLYFVDEAAFLQRPL--LI 214

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGII 270
               ++    R  + + N   +   F    +      +  +    R+    D  ++    
Sbjct: 215 EASLSQTTRCRIDLSSVN--GMANPFAQKRHGGRIPVFTFHW---RSDPRKDEAWYAKEC 269

Query: 271 SRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGE 327
           ++  +D+ V   + L   +        IP+ +I  A++   +         +   D+A E
Sbjct: 270 AK--IDNPVVVAQELDLNYSASAEGVLIPNEWIRAAINAHIKLGIQPTGKRLGAMDVADE 327

Query: 328 GGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360
           G DK     R G ++  + +WS     I +++++ 
Sbjct: 328 GRDKNAFSARYGFLLTEVEEWSGVGSDIYKSSEKA 362


>gi|13242438|ref|NP_077457.1| DNA packaging terminase subunit 1 [Cercopithecine herpesvirus 9]
 gi|11036590|gb|AAG27219.1|AF275348_40 unknown [Cercopithecine herpesvirus 9]
          Length = 745

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 16/149 (10%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT     ++  L+ST  G+ +   A+     +   + E+           WF  + +  
Sbjct: 271 GKTWFIVSLIALLMSTFRGIKVGYTAHIRKATEPV-FEEIK-----ARLEQWFGTERIE- 323

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                     E      S     T    S    +   G        +F DEA+       
Sbjct: 324 ------HVKGESITFSFSDGCCSTAVFSSSHNTNGIRGQTFN---LLFVDEANFIRPDAV 374

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           ++I+GF  + N    ++ ++NT + +  F
Sbjct: 375 QTIVGFLNQTNCKIIFVSSTNTGKASTSF 403


>gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581]
 gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581]
          Length = 531

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 8/137 (5%)

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           S    +   F             +    R     D  ++   +      +     EI   
Sbjct: 229 STPNGMGNPFAQ--RRHSGKISVFTFHWRDDPRKDDAWYAKQVDELDPVT--VAQEIDIN 284

Query: 288 FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           +        IP  +++ A+   ++   ++    +   D+A EG D+     R G +++ +
Sbjct: 285 YSASVEGVLIPSAWVQAAVDAHKKLGIEITGERLGALDVADEGKDQNAYAGRHGILLDLV 344

Query: 346 FDWSAK--LIQETNQEG 360
            +W+ K   I  T Q+ 
Sbjct: 345 DEWTGKGSDIFGTVQKA 361


>gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82]
          Length = 539

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                 F DEA+     +   I    ++    R  + + N   +N  F            
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
            +    R+    D  ++     +  +D+ V    E+   +        IP  +++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306

Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                       +   D+A EG DK     R G ++  + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351


>gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus]
          Length = 2968

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM------MLWLISTRPGM 108
            Q+     +   C   ++  NP  F   I+ G G GK+ L   +      +L  +   P  
Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343

Query: 109  S-IICIANS 116
              ++  A +
Sbjct: 2344 VCVLLTAPT 2352


>gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68]
          Length = 539

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                 F DEA+     +   I    ++    R  + + N   +N  F            
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
            +    R+    D  ++     +  +D+ V    E+   +        IP  +++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306

Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                       +   D+A EG DK     R G ++  + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351


>gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEA+     +   I    ++    R  + + N   +   F            
Sbjct: 141 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 194

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE---A 305
            +    R     D  ++     +  +D+ V   + L   +        IP  +++    A
Sbjct: 195 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQATVDA 252

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
             +  I      L    D+A EG DK     R G ++E++ +WS     I ++ ++
Sbjct: 253 HIKLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 307


>gi|225576048|ref|YP_002724855.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|225546646|gb|ACN92649.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|216996657|ref|YP_002333778.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
           ACA-1]
 gi|216752579|gb|ACJ73283.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
           ACA-1]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIAITDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306


>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
 gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
          Length = 402

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 61/210 (29%), Gaps = 20/210 (9%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
            +H        + + FK  +  GR  GKTT  A   +          +   A +  Q ++
Sbjct: 3   RLHQSQRKIAESSSRFKV-LRCGRRFGKTTY-AVEEMKGACLFEPGPVAYFATTRDQARD 60

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            +WAE+ +  +++   ++       L  +    +     + +       T R        
Sbjct: 61  IVWAELLE--NVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGWENIETARG------- 111

Query: 183 TFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                   + + V    D          + I     +    R   M +     + +  + 
Sbjct: 112 ------KKYSLVVLDELDSMRAFEKQWREIIRATLADY-RGRALFMGTPKGYKSLYRLEK 164

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
            +    +++ +   +     +     + + 
Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMR 194


>gi|225621767|ref|YP_002724125.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547658|gb|ACN93635.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
                 +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNTATFKTYNFTTYDNVLLGKGFIEPQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D +++  I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
 gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
 gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           110-3]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
 gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
 gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
 gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
 gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
          Length = 471

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 51/183 (27%), Gaps = 38/183 (20%)

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------- 245
           + +EA    +    +++    +      +  + N    +G  Y  F  P           
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSELRF--SFNPAEEDGAVYKRFVKPYKAIIDKQGYY 162

Query: 246 ---EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
              + +           +        + +    ++     YG + D              
Sbjct: 163 EDDDLYVGNVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  I   ++  A+    +         ++  D AG G D+  +  R G +IE    W  
Sbjct: 212 EDALIQPEWVGAAIDAHIKLGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLE 271

Query: 351 KLI 353
             +
Sbjct: 272 GDV 274


>gi|225621943|ref|YP_002724616.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547242|gb|ACN93227.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  +    +  + LG++     + F   N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERVDDK 306


>gi|317483571|ref|ZP_07942553.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316914997|gb|EFV36437.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 27/189 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ   +  +          ++      +I   R  GKT   + +++ L +  P +++I
Sbjct: 42  DRWQQGLLTLILGRRADGTFAASVGGVVLSI--CRQTGKTFTVSSLVVILCTLIPNLTVI 99

Query: 112 CIA-------NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             A       N+   ++  +                     +         + +    G+
Sbjct: 100 WTAHHNRTNSNTFDHVRTLV------------RNPAL----IGYLDHSGRTDGVRGGNGM 143

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
               +    +     R   F    N     +  DEA    +     ++   T  +PN   
Sbjct: 144 QEITFANGSKILFGARAQGFA-RGNDAVDIIVFDEAQILTEQAISDMVPA-TNTSPNALV 201

Query: 225 IMTSNTRRL 233
           +      R 
Sbjct: 202 LYIGTPPRP 210


>gi|326779045|ref|ZP_08238310.1| type III restriction protein res subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659378|gb|EGE44224.1| type III restriction protein res subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 34  PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 76

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 77  LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 115

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 116 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 172

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
               F      R   +T    R
Sbjct: 173 CQEAF--DPATRRLALTGTPFR 192


>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
           IHE3034]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|182438394|ref|YP_001826113.1| hypothetical protein SGR_4601 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466910|dbj|BAG21430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 34  PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 76

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E          + K  +    R   ++             
Sbjct: 77  LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 115

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 116 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 172

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
               F      R   +T    R
Sbjct: 173 CQEAF--DPATRRLALTGTPFR 192


>gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
          Length = 539

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                 F DEA+     +   I    ++    R  + + N   +N  F            
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMS- 307
            +    R+    D  ++     +  +D+ +    E+   +        IP  +++ A+  
Sbjct: 249 VFTFHWRSDPRKDDEWYRKECEK--IDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDA 306

Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             +         +   D+A EG DK     R G ++  + +WS K
Sbjct: 307 HIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGK 351


>gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905]
          Length = 539

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 291 QEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                 IP  +++ A+              +   D+A EG DK     R G ++  + +W
Sbjct: 289 SAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEW 348

Query: 349 SAK 351
           S K
Sbjct: 349 SGK 351


>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           198-1]
 gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           198-1]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
 gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
 gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
 gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
 gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
 gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
 gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
 gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
 gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
 gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
 gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
 gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
 gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
 gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
 gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
 gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
 gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
 gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
 gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 295 NFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
             I  ++IE A+   +    +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 10  AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69


>gi|195942758|ref|ZP_03088140.1| hypothetical protein Bbur8_08065 [Borrelia burgdorferi 80a]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 18/168 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNIIEHI 345
             +        D ++   I   D A    GD T +    R  +    I
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVRGDNTALCVMERVDDQFRTI 310


>gi|225622132|ref|YP_002725127.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
 gi|225546387|gb|ACN92395.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           94a]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYQARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
                      D ++   I   D A   GGD T +    R  + 
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|219846951|ref|YP_002333526.2| DNA packaging terminase subunit 1 [Equid herpesvirus 9]
 gi|226423816|dbj|BAH02470.2| DNA packaging protein [Equid herpesvirus 9]
          Length = 734

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           GKT     ++   ++T  G+ I   A+       + + + A + +W    P  H      
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P G  + ++                  S    +   G        +F DEA+    
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              ++I+GF  + N    ++ ++NT + +  F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396


>gi|9629774|ref|NP_045262.1| DNA packaging terminase subunit 1 [Equid herpesvirus 4]
 gi|2605992|gb|AAC59564.1| 47/44 [Equid herpesvirus 4]
          Length = 734

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           GKT     ++   ++T  G+ I   A+       + + + A + +W    P  H      
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P G  + ++                  S    +   G        +F DEA+    
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              ++I+GF  + N    ++ ++NT + +  F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396


>gi|50313286|ref|YP_053090.1| DNA packaging terminase subunit 1 [Equid herpesvirus 1]
 gi|139648|sp|P28969|TRM3_EHV1B RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein 44; AltName: Full=Terminase
           large subunit
 gi|59798996|sp|P84396|TRM3_EHV1V RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein 44; AltName: Full=Terminase
           large subunit
 gi|42795172|gb|AAS45929.1| putative terminase [Equid herpesvirus 1]
 gi|49617029|gb|AAT67302.1| DNA packaging protein [Equid herpesvirus 1]
          Length = 734

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           GKT     ++   ++T  G+ I   A+       + + + A + +W    P  H      
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P G  + ++                  S    +   G        +F DEA+    
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              ++I+GF  + N    ++ ++NT + +  F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396


>gi|262200363|ref|YP_003271571.1| NERD domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262083710|gb|ACY19678.1| NERD domain protein [Gordonia bronchialis DSM 43247]
          Length = 550

 Score = 41.6 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 5/171 (2%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +    +     + + ++   + +  I  G G GKT L   +      +R G  +  I  S
Sbjct: 200 DATAEIITEQQAVILSAISKLSRVEIRGGAGSGKTFL--ALEQARRLSRAGQRVALICYS 257

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L +      S W       +  E   L +                 ++ +  T    
Sbjct: 258 HG-LASYFTRITSHWSRREQPAYIGEFHDLGITWGASAGPDESVRTQEAAEFWEHTLPHQ 316

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
             E  +     H     A+  DEA    D     +L    +   +  ++ +
Sbjct: 317 MVELAEALPPGHRFD--AIVIDEAQDFADDWWLPLLACLRDPGTSGIYLFS 365


>gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 539

 Score = 41.3 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 291 QEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                 IP  +++ A+    +         +   D+A EG DK     R G ++  + +W
Sbjct: 289 STEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEW 348

Query: 349 SAK 351
           S K
Sbjct: 349 SGK 351


>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
 gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
          Length = 452

 Score = 41.3 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 47/272 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
           I  GRG GKT   A    W+ S   G           +  +  +  Q++  +    S  L
Sbjct: 60  IMGGRGAGKTRAGA---EWVRSMVEGARPLDAGRCRRVALVGETIEQVREVMIFGDSGIL 116

Query: 133 SMLP--HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
           +  P   R  +E     L                           ++   P+   GP   
Sbjct: 117 ACSPADRRPDWEATRKRL-----------------VWPNGAVASVHTAHDPEGLRGPQFD 159

Query: 191 HGMAVFNDEAS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
              A + DE +     +     +        +P    +  + T R       +   P   
Sbjct: 160 ---AAWVDELAKWKKAEETWDQLQFALRLGEDPR---VCVTTTPRNVDVLKKLLASPSTV 213

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
              +         +   F E + +RY   + + R E+ G               +E    
Sbjct: 214 -TTHAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSEMLER--G 269

Query: 308 REAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
           R      +  +++G D    AG G D+  +V 
Sbjct: 270 RIEKLPTFDRIVVGVDPATTAGAGSDECGIVV 301


>gi|327400267|ref|YP_004341106.1| hypothetical protein Arcve_0358 [Archaeoglobus veneficus SNP6]
 gi|327315775|gb|AEA46391.1| protein of unknown function DUF699 ATPase [Archaeoglobus veneficus
           SNP6]
          Length = 807

 Score = 41.3 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 25/141 (17%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
             I+A RG GKT +   +  +LIS      +  + I+ +A +   ++   +  + K L  
Sbjct: 275 VVITADRGRGKTAVLGIVTPYLISRMHRVLKRPVRIMVVAPTPQAVQTY-FRFLKKALVR 333

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                    Q +  +       L+       ++   +  R    E+          +   
Sbjct: 334 ---------QGMKNYKVKESNGLITVINSKFARVEYVVPRRAMIEK---------DYADI 375

Query: 195 VFNDEASGTPDII-NKSILGF 214
           +  DEA+G    +  +   G 
Sbjct: 376 IIVDEAAGIDVPVLWQITEGA 396


>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 470

 Score = 41.3 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILVPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           117-3]
          Length = 471

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKCIAEGLLMDINE 276


>gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3]
          Length = 966

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N      F  A++AGRG GK+      +     +    +I   + S 
Sbjct: 173 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 225

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 226 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 278

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K++LG
Sbjct: 279 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 312


>gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13]
          Length = 961

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N      F  A++AGRG GK+      +     +    +I   + S 
Sbjct: 173 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 225

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 226 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 278

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K++LG
Sbjct: 279 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 312


>gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a]
          Length = 1056

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N      F  A++AGRG GK+      +     +    +I   + S 
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402


>gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789]
 gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291]
 gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118]
          Length = 1056

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N      F  A++AGRG GK+      +     +    +I   + S 
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402


>gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c]
 gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer
           toxin-resistance protein 33
 gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae]
 gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c]
          Length = 1056

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N      F  A++AGRG GK+      +     +    +I   + S 
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402


>gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017]
 gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71]
          Length = 179

 Score = 41.3 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 295 NFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
             I  ++IE A+   +    +      +G D+A  G DK   V+R G+++    +W AK 
Sbjct: 10  AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69


>gi|288931818|ref|YP_003435878.1| hypothetical protein Ferp_1452 [Ferroglobus placidus DSM 10642]
 gi|288894066|gb|ADC65603.1| protein of unknown function DUF699 ATPase putative [Ferroglobus
           placidus DSM 10642]
          Length = 763

 Score = 41.3 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANS 116
           V     +  +          I+A RG GKT +   +  +LIS      +  + I+ +A +
Sbjct: 216 VLEAFETFFDRKREKKAVV-ITANRGRGKTAVLGIVTPYLISRMNRVLKRPVRILVVAPT 274

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              ++        K+L     R     Q +         +L+       ++      R  
Sbjct: 275 PYAVQTYF-----KFLKKALVR-----QGMKEFKEKRSNDLVTVINSKWARVEYAVPRRA 324

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGF 214
             E+          +   +  DEA+G    +  K + G 
Sbjct: 325 MVEK---------DYADIIIVDEAAGIDVPVLWKIVEGA 354


>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM1]
 gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM1]
          Length = 560

 Score = 41.3 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 72/340 (21%)

Query: 12  EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
           ++++ E L   E  + F    ++         P +       +Q E +E+   +  +   
Sbjct: 23  KEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDM----WDFQEELIESFHENRFNIAK 78

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
                            GK+T     +L  I     +++  +AN  +  ++ L     + 
Sbjct: 79  LPRQ------------TGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL----GRL 122

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                    +  Q + ++ +    EL   S  + +       R  S              
Sbjct: 123 QLAYEQLPLWLQQGIVVY-NKGSMELENGSKILAASTSASAVRGMSFN------------ 169

Query: 192 GMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244
              +F DE +  P+ I      S+    T    +   I+ S    +N  FY ++      
Sbjct: 170 --IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIISTPNGMN-HFYKLWVDAQKG 225

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--NYI 302
              +   ++    V G D+ + E  I+               QF Q+    F+      I
Sbjct: 226 RNGYAWSEVHWSKVPGRDAKWKEQTIANTSER----------QFTQEFDCEFLGSVDTLI 275

Query: 303 EEAMSREAIDD-----------LYAPL-----IMGCDIAG 326
             A  R    D              P+     I+  D++ 
Sbjct: 276 TAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSR 315


>gi|254884963|ref|ZP_05257673.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837756|gb|EET18065.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 566

 Score = 40.9 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 82  ISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           + AGRG+ K+T+     ++  +W +   PG  +  +AN+   LK+ +   V K   M+  
Sbjct: 38  VIAGRGMSKSTVIQSRRSYRCIWEM---PGAPLAFVANTYANLKDNIMPAVQKGWEMMGL 94

Query: 138 RHWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                       P  W A+   ++       S          S + P    G      + 
Sbjct: 95  YEGVHYIRGKEPPVSWKAKCSIIVNDYRNCYSFWNGSVIFMGSLDNPSLLAG---KSVVH 151

Query: 195 VFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
           +F DE+    D         + G       +  ++  + T  +        N    DW  
Sbjct: 152 LFYDESKYDKDEKVNRAMPVLRGDSLTYGASHLFLGLTITTDMPDV-----NEGEYDWYF 206

Query: 251 YQIDTRTVEGIDSGFH 266
                R    +D    
Sbjct: 207 -----RYAPNMDPDRI 217


>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 448

 Score = 40.9 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 80/276 (28%), Gaps = 40/276 (14%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GK+      M+      P    + I      L+++++                  
Sbjct: 48  GGAGSGKSHFVVQKMILKYLEYPNRKCLVIRKVGNSLRDSIF------------------ 89

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-------VF 196
           +      S W+       +       ++   T        F G  ++  +        + 
Sbjct: 90  ELFKTVLSDWHL------LERCEIRDSLLSITLPNGSTFIFKGLDDSEKIKSIANIDDIV 143

Query: 197 NDEASGTPDIINKSILGFFTELNP-NRFWIMTSNTRRLNGWFYDI-FNIPLEDWKRYQID 254
            +E +         +       N  N+  +M  N    + W Y++ F    ++     + 
Sbjct: 144 VEECTEIDKQEFSQLGLRLRSKNGYNQIHVMF-NPISKSNWVYEMWFQNGYDESDTMVLK 202

Query: 255 T--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSREA 310
           T  +  + +   +   +I     D    RI  LG+F    ++  I  N+  ++    +  
Sbjct: 203 TTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEF--ASLDKLIYTNWEELDFDWRKLM 260

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
               YA    G D          +      + + I+
Sbjct: 261 QQRPYAKACFGLDFGYVNDPSAFIAMIVDEVNKEIY 296


>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
 gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
          Length = 432

 Score = 40.9 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 196 FNDEASGTPDIINKS----ILGFFTELNPNRFWIMTSNTRRLNGW--FY--DIFNIPLED 247
           F DE +       +     I     +       + T N  +   +  FY  D       D
Sbjct: 126 FIDECNQITYKAWQIVKSRIRYKLNQYGIEPKMLGTCNPAKNWVYAQFYLKDKNGTLDND 185

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFP-QQEVNNFIPHNYIEEA 305
            K  Q        + + +   ++S    +S   +  +  G +    +    I +  I+  
Sbjct: 186 KKFIQALPTDNPHLPASYLTSLLSL-DENS---KQRLYYGNWEYDNDPAKLIDYEKIQNC 241

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
            +   I   +  + +  DIA  G DK V+    G  +  IF  +   I E
Sbjct: 242 FTNTFIP--FGEMYISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITE 289


>gi|18496890|ref|NP_569740.1| putative terminase gp4 [Mycobacterium phage TM4]
 gi|4336041|gb|AAD17572.1| putative terminase gp4 [Mycobacterium phage TM4]
          Length = 474

 Score = 40.9 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ +  + +       +  ++  +F  +I   R  GKT L   ++  L    P  ++I
Sbjct: 41  DLWQDDLGKLICAKRDDGLYAAD--MFAMSI--PRQTGKTYLLGALVFALCIKTPNTTVI 96

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     +    AE  + +  L  R       L++H       +L +    +      
Sbjct: 97  WTAH-----RTRTAAETFRSMQGLAKRDKIAPHILNVHTGNGKEAVLFK----NGSRILF 147

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
             R       +   G        +  DEA    +     ++   T   PN   ++     
Sbjct: 148 GAR-------ERGFGRGFAGVDVLIFDEAQILTENAMDDMVPA-TNAAPNPLILLAGTPP 199

Query: 232 RLN 234
           +  
Sbjct: 200 KPT 202


>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM2]
 gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM2]
          Length = 560

 Score = 40.9 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 58/334 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            + ++ E L   E  + F    ++         P +       +Q E +E+   H  +  
Sbjct: 22  TKHQIQEYLKCKEDPVYFAMNYIKIISLDEGIVPFKM----WDFQQELIESFHEHRFNIA 77

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                             GK+T     +L  I     +++  +AN  +  ++ L    S+
Sbjct: 78  KLPRQ------------TGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL----SR 121

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                     +  Q + ++ +    EL   S  + +       R  S             
Sbjct: 122 LQLAYEQLPLWIQQGIVVY-NKGSMELENGSKILAASTSASAVRGMSFN----------- 169

Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
               +F DE +  P+ I      S+    T    +   I+ S    +N  FY ++     
Sbjct: 170 ---IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIISTPNGMN-HFYKLWVDAQK 224

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302
               +   ++    V G D+ + E  I+           E   +F    V+  I  + + 
Sbjct: 225 GRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEF-LGSVDTLITASKLR 281

Query: 303 ----EEAMSREAIDDLYAPL------IMGCDIAG 326
               ++ M+     D+Y         I+  D++ 
Sbjct: 282 VLTYDDVMTTNGSLDIYEKPIDKHEYIITVDVSR 315


>gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1055

 Score = 40.9 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +  +D      +N++        ++AGRG GK+      +     +    +I   + S 
Sbjct: 263 ILSFIDAISEKTLNST------VTLTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  + K    L ++   +   +      +   ++   +  D +      +T  
Sbjct: 316 ENLKT-LFEFIFKAFDALGYQEHIDYDIIQSTNPQFNKAIVRVDIKRDHR------QTIQ 368

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              P             V  DEA+  P  I K +LG
Sbjct: 369 YIMPQDHQVLGQAE--LVVIDEAAAIPLPIVKKLLG 402


>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
 gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           21-1]
 gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
 gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           21-1]
          Length = 471

 Score = 40.9 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 75/267 (28%), Gaps = 21/267 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+         I   ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             D +  G D      R G++++ I +
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|34365522|tpg|DAA01288.1| TPA_exp: replicase/helicase/endonuclease [Danio rerio]
          Length = 3007

 Score = 40.9 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 1    MPRLISTDQKLEQELHEMLMHAECVLSF----KNFVMR----FFPWGIKGKPLEHFSQPH 52
            M   +   ++ E+ + ++   A   ++      N + R         +    L  F +  
Sbjct: 2248 MKDKLQQVEEHEEHIPDLASEANQKVAHLEKKNNIMCRRDGLALIRSLNDTQLSIFYEIR 2307

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL------NAWMMLWLISTRP 106
            +W L+            V   NP+     I+ G G GK+ L       A  +L  +   P
Sbjct: 2308 QWCLD-----------KVMGKNPSPVHLFITGGAGTGKSHLIKAIQYEAMRILSTVCRHP 2356

Query: 107  G-MSIICIANS 116
              +S++  A +
Sbjct: 2357 DNISVLLTAPT 2367


>gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii
           ACA-1]
 gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii
           ACA-1]
          Length = 450

 Score = 40.9 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 45/292 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H          T  K   S G   GKT L +++++  +    S    
Sbjct: 46  TTKQKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K   +        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D F      +   ++ +EA+         ++            I 
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIF 196

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
            +N      +F   +    + +K Y   T       + F E     Y       +  +L 
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
           G++   E  +        +       D  +   IM  D A   GGD T V  
Sbjct: 256 GEWVLNES-SLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAVCV 299


>gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
 gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
          Length = 450

 Score = 40.9 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 45/292 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H          T  K   S G   GKT L +++++  +    S    
Sbjct: 46  TTKQKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K   +        +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D F      +   ++ +EA+         ++            I 
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIF 196

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
            +N      +F   +    + +K Y   T       + F E     Y       +  +L 
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
           G++   E  +        +       D  +   IM  D A   GGD T V  
Sbjct: 256 GEWVLNES-SLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAVCV 299


>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
 gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
          Length = 436

 Score = 40.5 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 23/178 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A ++L + ++RP   ++C              E+ K +    H+   + 
Sbjct: 39  GGRGGGKSWTVAAVLLVMAASRPL-RVLCT------------REIQKSIKQSVHQ-LLKD 84

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHY-TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
               L+   ++  L  +  GI+   +     ++++ +   +F G        V+ +EA G
Sbjct: 85  VITRLNLHAFFEVLETEVRGINGSLFLFSGLQSHTVDSIKSFEGCD-----IVWVEEAHG 139

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVE 259
                  +++    +     +  +  N        Y  F   P  D    +I+ R   
Sbjct: 140 VSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPSPDTWVVEINWRDNP 195


>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
 gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
          Length = 471

 Score = 40.5 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 223 FWIMTSNTRRL--NGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
              +T N ++   +  F+  F      +  K  Q   +    ID G+ + ++S   +   
Sbjct: 190 RIFVTLNPKKNWCHTVFWKPFKAGQLPDKVKFLQALVQDNPFIDPGYIDNLMS---ITDK 246

Query: 279 VARIEIL-GQFP-QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           V +  +L G F    + N  + ++ I +  + E + +      +  DIA  G DK+VV+ 
Sbjct: 247 VKKQRLLYGNFDYDDDDNALMEYDSINDIFTNEFVVE--GKKYITADIARFGSDKSVVMV 304

Query: 337 RRGNIIEHIFDWSAKLI 353
             G  +  I  +     
Sbjct: 305 WNGLRVVEIRKFEKMRT 321


>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
          Length = 470

 Score = 40.5 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
                 +      +  + R   LG+         I   ++E A              ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHTKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|158318502|ref|YP_001511010.1| helicase domain-containing protein [Frankia sp. EAN1pec]
 gi|158113907|gb|ABW16104.1| helicase domain protein [Frankia sp. EAN1pec]
          Length = 1143

 Score = 40.5 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K  +  E+     +L  +    +   +L  S W   L E ++  D+  Y    R      
Sbjct: 284 KTYIAGELLHEAVILNRQKALVVAPATLRDSTWKPFLRETNLPADTVSYEELTRGMPAAG 343

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTRRLNGWF 237
                  H      V  DEA     +  +         T   P R  ++T+     +   
Sbjct: 344 QQGAALQHPDAYALVIVDEAHALRSLGTQRAEAMRLLLTGKVPKRLVLLTATPVNNS--L 401

Query: 238 YDIFN 242
           YD++N
Sbjct: 402 YDLYN 406


>gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 2423

 Score = 40.5 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 23/165 (13%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      +  W   L       +
Sbjct: 1194 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RIKDWGRRLAGPAGLRL 1249

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
              L+   +     + E  + +   + +    R++           +      V  DE   
Sbjct: 1250 VELTGDNTPDTRTIGEADVIVTTPEKWDGISRSWQTRG-------YVRKVSLVIIDEIHL 1302

Query: 201  -SGTPDIINKSI------LGFFTELNPNRFWI--MTSNTRRLNGW 236
             +G    I + I      +G  T  +     +    +N   L  W
Sbjct: 1303 LAGDRGPILEIIVSRMNYIGAATGSSVRLLGMSTACANATDLASW 1347


>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
 gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
          Length = 455

 Score = 40.5 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 96/297 (32%), Gaps = 45/297 (15%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNT-LWAEVSKW 131
           I  GRG GKT   A    W+     G           +  +  +  Q+++  ++ E S  
Sbjct: 62  IMGGRGAGKTRAGA---EWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGE-SGI 117

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           L+  P     E ++                          T + YS + P+   GP    
Sbjct: 118 LACSPPDRRPEWEATK---------------RRLVWANGATAQAYSAQEPEALRGPQFD- 161

Query: 192 GMAVFNDEASGT--PDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
             A + DE +     +     +        +P +  ++T+   R  G    I N P    
Sbjct: 162 --AAWVDELAKWRRAEETWDMLQFALRLGKHPQQ--VITTTP-RNVGVLKAILNNPSTV- 215

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
             +         +   F   + +RY   + + R E+ G   +           +E    R
Sbjct: 216 VTHAPTEANRAYLAESFLAEVQARY-AGTRLGRQELEGVLLEDVEGALWTTAQLEG--LR 272

Query: 309 EAIDDLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            A       +++  D A   G G D+  +V         + DW A ++++ +  G P
Sbjct: 273 LASPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRP 329


>gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII]
 gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
          Length = 534

 Score = 40.5 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 291 QEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                 IP  +++ A+    +         I   D+A EG D      R G +++ +  W
Sbjct: 289 AAEGILIPSEWVQAAIGAHTKLGITPSGARIGALDVADEGIDLNAFSSRTGVLLDRLKAW 348

Query: 349 SAK--LIQETNQ 358
           S K   I  T Q
Sbjct: 349 SGKGSDIYATTQ 360


>gi|312149784|gb|ADQ29854.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 304

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 16/157 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +K Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             +        D ++   I   D A    GD T +  
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVRGDNTALCV 299


>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
 gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
          Length = 470

 Score = 40.5 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 76/275 (27%), Gaps = 21/275 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GK+        W I       ++  A     ++     E+   +S    R   +
Sbjct: 21  KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                 + + +  +         +  +       +  +  +  G         + +EA  
Sbjct: 68  TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                   ++    +      W+  +    L+  +      P +D     ++        
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
                 +      +  + R   LG+             ++E A    ++        ++ 
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEAATDAHKKLGWKAKGAVVS 241

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
             D +  G D      R G++++ I +     I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276


>gi|33863356|ref|NP_894916.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640805|emb|CAE21260.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT
           9313]
          Length = 576

 Score = 40.5 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           S G G GKT+    M+   ++ RPG+ I   A +    +    A V K L  +P      
Sbjct: 158 SGGPGTGKTSTIVQMLARAVTLRPGLKIGLAAPTGKAARRLEEA-VRKGLETIPPPQRQA 216

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM---AVFNDE 199
           + SL   P       L+   G                      G H  H +    +  DE
Sbjct: 217 LTSL---PCSTLHRWLQARPGGF--------------------GRHQQHPLMLDLLVIDE 253

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            S     + +++L        +   +M  +  +L
Sbjct: 254 MSMVELALMQALLNAL---PVDSQLVMIGDPDQL 284


>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
 gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
          Length = 436

 Score = 40.5 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 37/262 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I AGRG GKT   A  +  L    PG  I  +  +   ++  +    S  L++       
Sbjct: 60  IRAGRGFGKTRAGAEWVSALARDNPGARIALMGATLRDVERVMVRGESGLLAVARKGEAP 119

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNT--HGMAVFN 197
           +                  S+G            YS   P+   G   H      +  + 
Sbjct: 120 KWIG---------------SLGQVHFTSGAIGFAYSAAAPEALRGPQHHAAWCDELGKWK 164

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
            EA G  +++    LG       +   ++T+  R        +    +      +   RT
Sbjct: 165 GEA-GWDNLMMTLRLG------EHPRVLVTTTPRATP-----LMRKVMALPDCVETIGRT 212

Query: 258 VEG--IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
            +   +   F + ++S+YG D+ + R E+ G+              ++    R       
Sbjct: 213 SDNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREGALWTRALLDR--QRVKTVPAL 269

Query: 316 APLIMGCD-IAGEGGDKTVVVF 336
             +++G D  A   GD   +V 
Sbjct: 270 DRVVVGVDPPATSSGDACGIVA 291


>gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative
           [Alicycliphilus denitrificans BC]
 gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative
           [Alicycliphilus denitrificans BC]
          Length = 454

 Score = 40.5 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRR 232
           T     PDT  G        V  DE +   D   I K++    ++  P     + S    
Sbjct: 113 TALPANPDTARGFSAN----VLLDEFAFHQDSRAIWKALFPVISK--PGLKLRVISTPNG 166

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
               FYD+     + W R+  D    V        E +  +   D D+   E   ++  +
Sbjct: 167 KGNKFYDLMTGADDGWSRHTTDIYQAVADGLPRNIEEL-RKGAGDDDLWAQEFELKWLDE 225

Query: 292 EVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGG 329
               ++P   I       + +       P  +G DIA    
Sbjct: 226 AS-AWLPFELITACEHEAAGKPEHYQGGPCFVGVDIASRND 265


>gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
 gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
          Length = 1102

 Score = 40.5 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 19/164 (11%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAIS--AGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q   ++       + V   +    +  ++  AGRG GK+      +          +I  
Sbjct: 254 QARTLDQAKAIL-TFVEAVSEKTLRSTVALTAGRGRGKSAALGMSLA-GAVAYGYSNIFV 311

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A S   LK   +  V K    L ++   + + +      +   ++  ++  + +     
Sbjct: 312 TAPSPENLKTV-FEFVFKGFDALKYKEHLDYEIVQSTNPEFNHAVVRVNIFREHR----- 365

Query: 173 CRTYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILG 213
            +T    +P      H+        V  DEA+  P  + K++LG
Sbjct: 366 -QTIQYIQPT-----HHEKLAQAELVAIDEAAAIPLPVVKNLLG 403


>gi|46949065|gb|AAT07420.1| UL89 DNA packaging protein [Macacine herpesvirus 3]
          Length = 671

 Score = 40.1 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEASGTPDI 206
               +  E  +  + ID K    T    S    ++  G   H      +  DEA    + 
Sbjct: 261 FAKDYVVENKDFVISIDHKGAKSTALFASCYNTNSIRGQNFH-----LLLVDEAHFIKEK 315

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +ILGF  +      +I ++NT      F
Sbjct: 316 AFNTILGFLAQNTTKIIFISSTNTTSDATCF 346


>gi|29366753|ref|NP_813693.1| gp33 [Streptomyces phage phiBT1]
 gi|29243073|emb|CAD80101.1| gp33 [Streptomyces phage phiBT1]
          Length = 527

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 83/310 (26%), Gaps = 20/310 (6%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
            WQ   +                      +   R  GK+T+ A +ML+ +    G     
Sbjct: 54  PWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 113

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  AN   Q +     + +K +     +               Y +   + +  D+   
Sbjct: 114 VIAAANDRNQARMVF--DSAKQMVNASPKLAAVCNVQRDVIR--YKDNTYRVVSADAGRQ 169

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                         F    +          A      +   I     + +     +    
Sbjct: 170 QGLNPAAVSLDEYAFSKSSDLFDALTLGSAARN--QPMFLIISTAGPDPDGPFAALCEQG 227

Query: 230 TRRLNGW------FYDIFNIPLEDWKRY---QIDTRTVEGIDSGFHEGIISRYGLDSDV- 279
            R  +G       FY  +   L +   +   ++  R     D    +   +     ++  
Sbjct: 228 ERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYDILNPDDFKAAAQRSTEAS 287

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-R 338
            RI  L QF +          +   A   +   +    ++ G D + +G    +V  R R
Sbjct: 288 FRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKGDSTALVACRVR 347

Query: 339 GNIIEHIFDW 348
              +  +  W
Sbjct: 348 DLRVFVLGHW 357


>gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654]
          Length = 426

 Score = 40.1 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 47/272 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
           I  GRG GKT   A    W+ +   G           +  I  +  Q+++ +        
Sbjct: 33  ILGGRGAGKTRAGA---EWVRAQVEGPAPLSPGRAGRVALIGETFDQVRDVMV------- 82

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                   F    +            E +          T  ++S   P+   GP     
Sbjct: 83  --------FGDSGIVACAPPDRRPAWEATKRRLVWPNGATATSFSASEPEGLRGPQFD-- 132

Query: 193 MAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            A + DE +     D     +      L  +   ++T+  R +      I    L     
Sbjct: 133 -AAWADELAKWKKVDDAWDMLQFAL-RLGDHPRQVVTTTPRDVP-----ILRRLLTLSST 185

Query: 251 YQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                 T      +   F E I +RYG  + + R E+ G         F     +E+   
Sbjct: 186 VTTHAPTTANRANLAKSFLEEIEARYG-GTRLGRQELEGVLLDDREGAFWSTAMLEDC-- 242

Query: 308 REAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
           R       + +++  D       G D+  +V 
Sbjct: 243 RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVV 274


>gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
           L2-32]
 gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
           L2-32]
          Length = 477

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 66/231 (28%), Gaps = 28/231 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSI 110
             WQ +    V        +       + A+ +  R  GKT    W+ +   +  PGM I
Sbjct: 37  DPWQRQINRIVLA-----KSADGFWSARNAVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A   + +K+T         S+       EM  L     G     +  + G +   + 
Sbjct: 92  VWTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFR 139

Query: 171 ITCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTS 228
              R +   R      G        +  DEA    D    S+L       NP   ++ T 
Sbjct: 140 NGSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTP 197

Query: 229 N-TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
              R     F  + +          +       R  + +D          Y
Sbjct: 198 PGPRDNGEAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSY 248


>gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1]
          Length = 313

 Score = 40.1 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--R 308
            I+      +     + I  +   D       I    P+ + + + I  +++E A+   +
Sbjct: 21  HINYNENPFLSQTALDVIADKKRRD-PEGFAHIYDGMPRADDDMSIIKASWVEAALDAHK 79

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
               D      +G D+A  G DK  +V R+G +     +W A+ 
Sbjct: 80  LLNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWKARE 123


>gi|158425199|ref|YP_001526491.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
 gi|158332088|dbj|BAF89573.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
          Length = 569

 Score = 40.1 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           ++ST + L+               F+NF+     W   G P      P   Q +    + 
Sbjct: 1   MVSTKEHLKSSTR-FTDPDPLKADFRNFLYVV--WKHLGLP-----DPTPIQYD----IA 48

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           V+       S    F+       G+GK+ + +  + WL+   P   I+ ++ S+
Sbjct: 49  VYLQHGPKRSIIEAFR-------GVGKSWVTSAFVCWLLYCNPDHKILVVSASK 95


>gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
 gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
          Length = 2013

 Score = 40.1 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W + L      ++
Sbjct: 1169 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVKDWGARLAKPLGLKL 1224

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
              L+   +     + +  + I   + +    R++           +      V  DE   
Sbjct: 1225 VELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRG-------YVRKVSLVIIDEIHL 1277

Query: 201  -SGTPDIINKSILG-----FFTELNPNRFWIM---TSNTRRLNGW 236
             +G    I + I+        +  N  R   M    +N   L  W
Sbjct: 1278 LAGDRGPILEIIVSRMNYIASSTKNAVRLLGMSTACANATDLGNW 1322


>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
 gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
          Length = 408

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 83/269 (30%), Gaps = 41/269 (15%)

Query: 82  ISAGRGIGKTTLNA-WMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A W+   +  +RP        +  +  +  Q++  +    S  L+  
Sbjct: 16  IMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILACS 75

Query: 136 P--HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           P   R  +E     L                           ++   P+   GP      
Sbjct: 76  PADRRPDWEATRKRL-----------------VWPNGAVATVHTAHDPEGLRGPQFD--- 115

Query: 194 AVFNDEAS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
           A + DE +     +     +        +P    +  + T R  G   ++   P      
Sbjct: 116 AAWVDELAKWKKAEETWDQLQFALRLGEDPR---VCVTTTPRNVGVLKNLLASPSTV-TT 171

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +         +   F E + +RY   + + R E+ G               IE    R+ 
Sbjct: 172 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDV 230

Query: 311 IDDLYAPLIMGCDI---AGEGGDKTVVVF 336
              L   +++G D    AG G D+  +V 
Sbjct: 231 --PLLDRIVVGLDPATTAGAGSDECGIVV 257


>gi|221148414|gb|ACL99813.1| BDRF1 [Human herpesvirus 4]
          Length = 690

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT +   ++  ++S    + I  +A+ +  + + ++ E+   L+        E+   + 
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             +  ++  +           T+ C T   +        H      +F DEA+       
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +ILGF  + +    +I + N+      F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364


>gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii
           Far04]
 gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii
           Far04]
          Length = 267

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 72/243 (29%), Gaps = 38/243 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
              Q E +  ++ H             K   S G   GKT L +++++  +    S    
Sbjct: 46  TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEK 95

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             +   I NS   L      ++ K         +  +          + ++    + I  
Sbjct: 96  DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D+F      +   ++ +EA+       +++L     L   +  I+
Sbjct: 150 GK-----------NRDSFSKIRGGNSAIIYVNEATVIHK---ETLLEAIKRLRKGKAIII 195

Query: 227 T-SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
             +N      +F   F    + +K Y   T       + F E     Y       +  +L
Sbjct: 196 FDTNPESPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVL 254

Query: 286 -GQ 287
            G+
Sbjct: 255 YGE 257


>gi|123845631|sp|Q3KSR3|TRM3_EBVG RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|64173286|gb|AAY41136.1| probable DNA packaging protein [Human herpesvirus 4]
          Length = 690

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT +   ++  ++S    + I  +A+ +  + + ++ E+   L+        E+   + 
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             +  ++  +           T+ C T   +        H      +F DEA+       
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +ILGF  + +    +I + N+      F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364


>gi|82503246|ref|YP_401690.1| BGRF1/BDRF1 [Human herpesvirus 4]
 gi|139424519|ref|YP_001129485.1| BGRF1/BDRF1 [Human herpesvirus 4 type 2]
 gi|267408|sp|P03219|TRM3_EBVB9 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|254784086|sp|P0C744|TRM3_EBVA8 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|1632798|emb|CAA24834.1| probable DNA packaging protein [Human herpesvirus 4]
 gi|23893636|emb|CAD53440.1| BGRF1-BDRF1 protein [Human herpesvirus 4]
 gi|82703995|gb|ABB89264.1| BGRF1/BDRF1 [Human herpesvirus 4]
          Length = 690

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT +   ++  ++S    + I  +A+ +  + + ++ E+   L+        E+   + 
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             +  ++  +           T+ C T   +        H      +F DEA+       
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +ILGF  + +    +I + N+      F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364


>gi|29826542|ref|NP_821176.1| hypothetical protein SAV_2 [Streptomyces avermitilis MA-4680]
 gi|29603638|dbj|BAC67711.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 77

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            P   +  I +  G GKT++ A      ++  P   I+    +   L
Sbjct: 2   PPQGARGTIVSATGSGKTSMAAAST---LNCFPEGRILVTVPTLDLL 45


>gi|15618661|ref|NP_224947.1| exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
 gi|4377059|gb|AAD18890.1| Exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
          Length = 493

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
            ++     + + N         +S G G GKT L A ++L L+  +P + I  ++ +   
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189

Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            + ++  L    +   + ++   H F  +      +     L+++   +         +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
                     G      +      +S         ILG   +L P    I   N  + L 
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288

Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
           G+F++   F       K   +D  T   +     
Sbjct: 289 GYFHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322


>gi|15836285|ref|NP_300809.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
 gi|16752288|ref|NP_445657.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|33242111|ref|NP_877052.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
 gi|7190033|gb|AAF38887.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8979125|dbj|BAA98960.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
 gi|33236621|gb|AAP98709.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
          Length = 493

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
            ++     + + N         +S G G GKT L A ++L L+  +P + I  ++ +   
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189

Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            + ++  L    +   + ++   H F  +      +     L+++   +         +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
                     G      +      +S         ILG   +L P    I   N  + L 
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288

Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
           G+F++   F       K   +D  T   +     
Sbjct: 289 GYFHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322


>gi|308178069|ref|YP_003917475.1| type I restriction-modification system restriction subunit
           [Arthrobacter arilaitensis Re117]
 gi|307745532|emb|CBT76504.1| type I restriction-modification system restriction subunit
           [Arthrobacter arilaitensis Re117]
          Length = 1033

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 14/146 (9%)

Query: 66  CHSNVNNSNPTIFKCAISAG------RGIGKTTLNAWMMLWLISTRPGMSI-ICIANSE- 117
            H+          + A   G      +G GK+    W+  W++ T+    + +    +E 
Sbjct: 248 RHNQYFGVQAAQDRIAKREGGIIWHTQGSGKSLTMVWLAKWILETQHDARVLVITDRTEL 307

Query: 118 -TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP--SGWYAELLEQSMGIDSKHYTITCR 174
             Q+++       K +          M + S  P       +    + G   K       
Sbjct: 308 DGQIEDGFSGVGEKIVRTQSGADMLAMLNTSNPPLMCSLVHKFRGTNDGARDKDAEDFAN 367

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEA 200
               + P    G      + VF DEA
Sbjct: 368 ELKTQIP---AGYTAKGNIFVFVDEA 390


>gi|281355726|ref|ZP_06242220.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318606|gb|EFB02626.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 28/158 (17%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS-ETQLKNTLWAEVSKWLSMLPHR 138
             IS G G GKTT+ A ++    +  P + +   A + + Q +          L      
Sbjct: 187 TVISGGPGTGKTTVVAALLALEFARAPELRVALCAPTGKAQAR----------LGEALRE 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM---AV 195
              ++             +LE +     +       T+  +        H  + +    V
Sbjct: 237 DGLKI----GTAEAIRRRILELAPSTIDRLIGSAPLTHRTK-------YHAGNPLPFDLV 285

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
             DE+S     +   ++       P    I+  +  +L
Sbjct: 286 IVDESSMVSLPLMARLMQAL---APETRLILLGDPNQL 320


>gi|124022672|ref|YP_001016979.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962958|gb|ABM77714.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus
           marinus str. MIT 9303]
          Length = 576

 Score = 39.7 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 42/182 (23%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q   +EA+D H                +S G G GKT+    M+   ++ RPG+ I   A
Sbjct: 142 QQAAVEAIDNH------------GVVLLSGGPGTGKTSTIVQMLARAVTLRPGLRIGLAA 189

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +    +    A V K L  +P     + Q+L+  P       L+   G           
Sbjct: 190 PTGKAARRLEEA-VRKGLEAIP---PTQRQALTSLPCSTLHRWLQARPGGF--------- 236

Query: 175 TYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                      G H  H +    +  DE S     + +++L        +   +M  +  
Sbjct: 237 -----------GRHQQHPLMLDLLVIDEMSMVELSLMQALLSAL---PIDSQLVMIGDPD 282

Query: 232 RL 233
           +L
Sbjct: 283 QL 284


>gi|124009888|ref|ZP_01694555.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
 gi|123984124|gb|EAY24490.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
          Length = 539

 Score = 39.7 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 77/262 (29%), Gaps = 32/262 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           AG+G GKT   A ++ + + T  PG+     AN++ QL ++    V      L    + E
Sbjct: 36  AGQGAGKTH-GAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 94

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 95  YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 154

Query: 198 DEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD---------------IF 241
           DE   T  + + + ILG   +        ++  T+ L    YD               IF
Sbjct: 155 DETKDTREEAVQEVILGRLRQQG----LYISEATQALTSEEYDEGSPVVANLPFNPLYIF 210

Query: 242 NIPLED-WKRYQIDTRTVEGIDSGFH----EGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             P +  W     +    E           +    + G DS    I       +   +N+
Sbjct: 211 TSPAKVPWINDWFELSEYEEEIKAKIYNPPQYFKKKVGGDSKFVVISATHLNLKNLPSNY 270

Query: 297 IPHNYIEEAMSREAIDDLYAPL 318
           I       A  R  +     PL
Sbjct: 271 IEKQEANLASHRHGMLIYGDPL 292


>gi|269302541|gb|ACZ32641.1| putative exodeoxyribonuclease V, alpha subunit [Chlamydophila
           pneumoniae LPCoLN]
          Length = 493

 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
            ++     + + N         +S G G GKT L A ++L L+  +P + I  ++ +   
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189

Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            + ++  L    +   + ++   H F  +      +     L+++   +         +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
                     G      +      +S         ILG   +L P    I   N  + L 
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288

Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
           G+F++   F       K   +D  T   +     
Sbjct: 289 GYFHENTFFLKTSHRAKTGAVDQLTQSVLRGEMI 322


>gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
 gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
          Length = 709

 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 21/170 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +  G GKT      M W    RPG  ++ IA  +  ++      V  W + L      ++
Sbjct: 279 SPTGSGKTVAAELAMWWAFKERPGSKVVYIAPMKALVRE----RVKDWGARLAKPLGLKL 334

Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
             L+   +     + +  + I   + +    R++           +      V  DE   
Sbjct: 335 VELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDEIHL 387

Query: 201 -SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDW 248
            +G    I + I+        N     T N+ RL G      N   L +W
Sbjct: 388 LAGDRGPILEIIVSRM-----NYIAASTKNSVRLLGMSTACANASDLGNW 432


>gi|290960848|ref|YP_003492030.1| phage terminase large subunit [Streptomyces scabiei 87.22]
 gi|260650374|emb|CBG73490.1| phage terminase (large subunit) [Streptomyces scabiei 87.22]
          Length = 598

 Score = 39.3 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 29/203 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA---ISAGRGIGKTTLNAWMMLWLIS--TR 105
           P  WQ+ ++ A          +++  +       +   R  GK+TL+  + ++L      
Sbjct: 101 PDPWQVAWIIAPVFGWVRFDADADMYVRIITDLYVDVPRKNGKSTLSGGLAIYLTCADGE 160

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           PG  +I  A ++ Q    ++  + +     P        +L  H   +  +++    G  
Sbjct: 161 PGAQVIAAATTKQQ-AGYVFTPIRQLAERAP--------ALKGHVKPYRGKIIHPKSGSY 211

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFW 224
            +                    H  +      DE     D    + I    T     R  
Sbjct: 212 FEVIASVADA-----------QHGANLHGAVIDELHVHKDPEMVEVIE---TGTGSRRQP 257

Query: 225 IMTSNTRRLNGWFYDIFNIPLED 247
           ++   T   +G    I+N     
Sbjct: 258 LIVIITTADSGKPETIYNRKRTR 280


>gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1075

 Score = 39.3 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+      +          +I   A S   LK  L+  + K    + ++ 
Sbjct: 279 VALTAARGRGKSAALGVAIA-GAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    S +   ++   + I  +H         ++               +  DE
Sbjct: 337 HIDYDLVESTNSAFNKAIV--RVNIFRQHRQTIQYIQPKDHEKLAQAE------LLVIDE 388

Query: 200 ASGTPDIINKSILG 213
           A+  P  I K++LG
Sbjct: 389 AAAIPLPIVKALLG 402


>gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001]
          Length = 1974

 Score = 39.3 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W + L      ++
Sbjct: 1153 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVKDWGARLARPLGLKL 1208

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
              L+   +     + +  + I   + +    R++           +      V  DE   
Sbjct: 1209 VELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDEIHL 1261

Query: 201  -SGTPDIINKSI 211
             +G    I + I
Sbjct: 1262 LAGDRGPILEII 1273


>gi|154500994|ref|ZP_02039032.1| hypothetical protein BACCAP_04681 [Bacteroides capillosus ATCC
           29799]
 gi|150270018|gb|EDM97537.1| hypothetical protein BACCAP_04681 [Bacteroides capillosus ATCC
           29799]
          Length = 726

 Score = 39.3 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           +   +  R Q E M         +   +  T   C IS G G GK ++   ++       
Sbjct: 313 DLDDEIDRQQAE-MGFTFAQEQRHAIRTALTSPICIISGGPGTGKASIQRAILNIYKKVF 371

Query: 106 PGMSIICIANSET 118
           P   ++C A +  
Sbjct: 372 PDSDVVCCAPTGR 384


>gi|254425155|ref|ZP_05038873.1| cyclic peptide transporter subfamily [Synechococcus sp. PCC 7335]
 gi|196192644|gb|EDX87608.1| cyclic peptide transporter subfamily [Synechococcus sp. PCC 7335]
          Length = 546

 Score = 39.3 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 14/141 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---------ETQLKNTLWAEVSKWL 132
           I  G G GK+TL   +    I   P    + + N            QL +T++++   + 
Sbjct: 360 IVGGNGSGKSTLAKLITSLYI---PDSGQLILDNEPITDINREWYRQLFSTVFSDYYLFE 416

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAEL--LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            ++        +      +  Y E   LE+ + I +   + T  +  + +    +  +  
Sbjct: 417 RLVSTEETSLEEVTPRSTAQNYLEKLQLEEKVSIQNGQLSTTALSQGQRKRLALLAAYLE 476

Query: 191 HGMAVFNDEASGTPDIINKSI 211
                  DE +   D + + I
Sbjct: 477 DRSLYLFDEWAADQDPVFREI 497


>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
 gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
          Length = 419

 Score = 39.3 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 86/285 (30%), Gaps = 43/285 (15%)

Query: 82  ISAGRGIGKTTLNA-WMMLWLISTRPG-----MSIICIANSETQLKNT-LWAEVSKWLSM 134
           I  GRG GKT   A W+   +  +RP        I  +  +  Q++   ++ E S  ++ 
Sbjct: 27  IMGGRGAGKTRAGAEWVRAQVEGSRPLDEGRCKRIALVGETIDQVREVMVFGE-SGIMAC 85

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + Q+                            + YS   P+   GP       
Sbjct: 86  SPPDRRPDWQATR---------------KRLIWPNGAVAQAYSAHDPEALRGPQFDGA-- 128

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  R  + T  T R  G   DI  +P        
Sbjct: 129 -WVDELAKWKRARETWDMLQFGLRLGDAPRVCVTT--TPRNVGVLKDIVAVP----STVV 181

Query: 253 IDTRTVEG---IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
               T      +   F + + +RY   + + R E+ G    +  +       +E A  R 
Sbjct: 182 TSAPTEANRAYLAESFLDEVRARY-AGTRLGRQELDGLLIDEAEDALWTPAMLEAA--RV 238

Query: 310 AIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                +  +++  D       G D+  ++         + DW   
Sbjct: 239 ESLPEFDRVVVAVDPPVTGHAGSDECGIIMAGAITRGPVQDWRVW 283


>gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb03]
          Length = 2011

 Score = 39.3 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1219 VELTGDNTPDTKTIRDSDIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268


>gi|296129166|ref|YP_003636416.1| type III restriction protein res subunit [Cellulomonas flavigena
           DSM 20109]
 gi|296020981|gb|ADG74217.1| type III restriction protein res subunit [Cellulomonas flavigena
           DSM 20109]
          Length = 601

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 47/202 (23%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  G           WQ E +E              P  F  A++   G GKTT    
Sbjct: 34  PWGAAGSL-------RAWQAEAIELYRQ--------RGPRDF-LAVATP-GAGKTTFALR 76

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +   L+  +    +  +A +E          + K  +    R    +     +  G +  
Sbjct: 77  IATELLEAKVVRRVTVVAPTEH---------LKKQWADAAARVGIRLDPRFSNAQGRHGA 127

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE------ASGTPDIINKS 210
             +      ++  +      +    +            V  DE      A    D + ++
Sbjct: 128 GYDGVAVTYAQVASKPALHAARTTAER---------TLVILDEVHHGGDALSWGDAVREA 178

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
             G        R   +T    R
Sbjct: 179 FEGA------TRRLALTGTPFR 194


>gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb18]
          Length = 2011

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1219 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268


>gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb01]
 gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb01]
          Length = 2012

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1219 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268


>gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum
           F8]
          Length = 477

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ +    +         ++  T+        R  GKT    W+ +   +  PGM I+
Sbjct: 37  DVWQRQINRIILAKSADGFWSARNTVLSI----PRQTGKTYDIGWVAIHRAARTPGMRIV 92

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A   + +K+T         S+       EM  L     G     +  + G +   +  
Sbjct: 93  WTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFRN 140

Query: 172 TCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSN 229
             R +   R      G        +  DEA    D    S+L       NP   ++ T  
Sbjct: 141 GSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTPP 198

Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
             R     F  + +          +       R  + +D          Y
Sbjct: 199 GPRDNGEAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSY 248


>gi|108797804|ref|YP_638001.1| hypothetical protein Mmcs_0827 [Mycobacterium sp. MCS]
 gi|119866897|ref|YP_936849.1| hypothetical protein Mkms_0844 [Mycobacterium sp. KMS]
 gi|108768223|gb|ABG06945.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692986|gb|ABL90059.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 563

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 17/189 (8%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  +A+  H  + + ++   + +  +  G G GKT L A      ++ R G  +  +  
Sbjct: 212 EDAADALTEH-QAIILDAIRLLNRVEVRGGAGSGKTFL-AMEQARRLAQR-GQRVALVCY 268

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L      W       +  E  +L +                  + +      
Sbjct: 269 SHG-LASYLERICETWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEETVRFWEHDLPL 327

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----------TELNPNRFW 224
           +  +        H      +  DEA    D     +L              T+     F 
Sbjct: 328 HMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDPVDGGLYVFTDEGQRVFN 385

Query: 225 IMTSNTRRL 233
            + S    L
Sbjct: 386 RVGSPPVPL 394


>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
 gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
          Length = 461

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 29/246 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G G GK+ + A  ++ L++  PG   I    +   L   ++ E+ K       R  F  
Sbjct: 58  SGFGGGKSWVAARKVIQLLTLNPGHDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNK 117

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q                S+ +  K   + C   S E     +G +      +  DE   T
Sbjct: 118 QDKIY------------SVLVKGKWTRVICE--SMENYTRLIGVNAA---WIVADEFDTT 160

Query: 204 PDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGW--FYDIFNIPLE-DWKRYQIDTRT 257
              +  +              R +++ S      G+   Y IF +  +   +  +  T  
Sbjct: 161 KQDVALAAYHKLLGRLRAGFVRQFVIVSTP---EGYRAMYQIFEVEKDSQKRLIRAKTTD 217

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              + + F + + S+Y   +++    + G F              EE  S E +      
Sbjct: 218 NHHLPADFIDTLRSQY--PANLIDAYLNGLFVNLTSGAVYKMFNREENASTEEVQ-PEDT 274

Query: 318 LIMGCD 323
           LI+G D
Sbjct: 275 LIIGMD 280


>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
 gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 83/273 (30%), Gaps = 40/273 (14%)

Query: 84  AGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            GRG GKT   A    WLI     G  +  +  +   ++  +                  
Sbjct: 77  GGRGAGKTYAGAA---WLIEQATAGARLALVGPTFHDVREVM------------IEGPSG 121

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEA 200
           +++LSL       E   + +         T   +S E PD+  G   H       + DE 
Sbjct: 122 LKALSLPDEHPRWEASRRRL---VWPNGATAYAFSAEDPDSLRGPQFHAA-----WADEF 173

Query: 201 SGTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
              P   +   +   G     +P      T    R                      +  
Sbjct: 174 CAWPKPGDTLAMLRFGLRLGADPRLVVTTTPKPHRALKVLM----AEPGVSLTRAGTSAN 229

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              +   F   + S YG  + +A  E+ G   + +   F   +      +R A  D    
Sbjct: 230 AGNLAPAFLRTLESLYG-GTRLAAQELDGVIVETDGGLFRAEDLARCRAARPARLDR--- 285

Query: 318 LIMGCD-IAGEGGDKT--VVVFRRGNIIEHIFD 347
           +++  D  A  GGD    VVV RR +    + D
Sbjct: 286 VVVAVDPPATAGGDACGIVVVGRRDDRAFVLAD 318


>gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
 gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
          Length = 98

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 82  ISAGRGIGKTTL--NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           + +GR  GKT L   A + L    T+PG  +  +A S  Q K+  WA++ 
Sbjct: 25  VFSGRRFGKTRLMLTAGVEL--CLTKPGAKVFHLAPSRKQAKDIAWADLK 72


>gi|145225752|ref|YP_001136430.1| hypothetical protein Mflv_5176 [Mycobacterium gilvum PYR-GCK]
 gi|145218238|gb|ABP47642.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
          Length = 551

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 5/181 (2%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    V     S + ++   + +  I  G G GKT L       L      ++++C +  
Sbjct: 199 EDAADVLTEQQSVILDAIKLLHRVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYS-- 256

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L + L    + W       +  E   L                    K +     + 
Sbjct: 257 -HGLASYLERITATWNRRHRPAYVGEFHDLGKQWGAPAGPDESVRNDETVKFWEHDLPSQ 315

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                      H     A+  DEA    D     +L    +      ++ +   +R+   
Sbjct: 316 MTRLATQLDPGHRFD--AIVVDEAQDFADAWWDPLLAALKDDETGGLYLFSDEGQRVFDR 373

Query: 237 F 237
           F
Sbjct: 374 F 374


>gi|124005744|ref|ZP_01690583.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
 gi|123988812|gb|EAY28418.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
          Length = 535

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG+G GKT     +   LIS  PG+     AN++ QL ++    V      L    + E 
Sbjct: 33  AGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEH 92

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFND 198
                +  G          G   K Y      ++         + +             D
Sbjct: 93  TGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152

Query: 199 EASGT-PDIINKSILGFFTELN 219
           E   T  + + + ILG   +  
Sbjct: 153 ETKDTREEAVQEVILGRLRQQG 174


>gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1993

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 23/165 (13%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W     PG  ++ IA  +  ++      V  W   L       +
Sbjct: 1164 SPTGSGKTVAAELAMWWAFREHPGSKVVYIAPMKALVRE----RVKDWGDRLAKPLGLRL 1219

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
              L+   +     + +  + I   + +    R++           +      V  DE   
Sbjct: 1220 VELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRG-------YVRKVSLVVIDEIHL 1272

Query: 201  -SGTPDIINKSILG-----FFTELNPNRFWIM---TSNTRRLNGW 236
             +G    I + I+        +  N  R   M    +N   L  W
Sbjct: 1273 LAGDRGPILEIIVSRMNYIAASTKNAVRLLGMSTACANATDLGNW 1317


>gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A]
 gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A]
 gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A]
          Length = 477

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ +    +         ++  T+        R  GKT    W+ +   +  PGM I+
Sbjct: 37  DVWQRQINRIILAKSADGFWSARNTVLSI----PRQTGKTYDIGWVAIHRAARTPGMRIV 92

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A   + +K+T         S+       EM  L     G     +  + G +   +  
Sbjct: 93  WTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFRN 140

Query: 172 TCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWIMTSN 229
             R +   R      G        +  DEA    D    S+L       NP   ++ T  
Sbjct: 141 GSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPP 198

Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
             R     F  + +          +       R  + +D          Y
Sbjct: 199 GPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSY 248


>gi|117926000|ref|YP_866617.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609756|gb|ABK45211.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 1170

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 53/249 (21%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA--------------- 81
           PWG      +       ++++     D     + +N  P   + +               
Sbjct: 67  PWGFDAPGPDFKLGVEAFRIQLAHLFDPMMAVHTSNVEPLPHQISAVYESMLPRQPLRYV 126

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++   G GKT +   ++  L+       I+ +A           + V +W   +  +   
Sbjct: 127 LADDPGAGKTIMAGLLIRELLMRSDAKRILIVAPG---------SLVEQWQDEMYEKFGV 177

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVFNDE 199
           E    S        + +  S     +H  +  R     R D F     H+   + +  DE
Sbjct: 178 EFTVFSRE-----LDQVSLSGNAFDEHDRLIARLDQLSRNDEFQEKLAHSEWDL-IIVDE 231

Query: 200 -----ASGTPDIINKS---ILGFFTELNPNRFWIMTSNTRR-------------LNGWFY 238
                AS     + ++    LG         F +MT+                     FY
Sbjct: 232 AHKMSASYYGQKVKETKRFKLGKLLGSVSRHFLLMTATPHNGKETDFQLFLSLLDGDRFY 291

Query: 239 DIFNIPLED 247
             F      
Sbjct: 292 GKFREGAHR 300


>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
 gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
          Length = 478

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 90/298 (30%), Gaps = 42/298 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
           I  GRG GKT   A    W+ S   G           +  +  +  Q+++ +    S  L
Sbjct: 86  ILGGRGAGKTRAGA---EWVRSEVEGAEPFGIGRARRMALVGETYDQVRDVMIHGDSGIL 142

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +  P     E ++                          T + +S   P+   GP     
Sbjct: 143 ACSPPDRRPEWRA---------------GERRLVWPNGATAQAFSASDPEALRGPQFD-- 185

Query: 193 MAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            A + DE +           +          R  + T+   R       +   P      
Sbjct: 186 -AAWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVTTTP--RNVPLLKQLLESPSTV-TT 241

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +         +  GF   + +RYG  S +AR E+ G               +E+   R+ 
Sbjct: 242 HAPTEANRANLAPGFLTEVRARYG-GSRLARQELDGVMLADVDGALWTSGMLEQLQRRDR 300

Query: 311 IDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
                  +++  D    A +G D   ++         I +W A ++ +   +G  P G
Sbjct: 301 --PPLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHTVQGLGPTG 356


>gi|126433456|ref|YP_001069147.1| hypothetical protein Mjls_0847 [Mycobacterium sp. JLS]
 gi|126233256|gb|ABN96656.1| conserved hypothetical protein [Mycobacterium sp. JLS]
          Length = 549

 Score = 38.6 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 6/162 (3%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  +A+  H  + + ++   + +  +  G G GKT L A      ++ R G  +  +  
Sbjct: 198 EDASDALTEH-QAVILDAIRQLNRVEVRGGAGSGKTFL-AMEQARRLAQR-GQRVALVCY 254

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L      W       +  E  +L +                  + +      
Sbjct: 255 SHG-LASYLERIAETWPRRQQPAYVGEFHALGVQWGAPEGPDEAVRTEETVRFWEHDLPL 313

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              +        H      +  DEA    D     +L    +
Sbjct: 314 QMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRD 353


>gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
 gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
          Length = 1949

 Score = 38.6 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 20/154 (12%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIFKCA--------ISAGRGIGKTTLNAWMMLWLISTRP 106
            Q   +E +     S  N      F           I A  G GKT        W     P
Sbjct: 1125 QNPVLEEICAKRFSFFNAVQSQFFHTVYHTPTNVFIGAPTGSGKTMAAELATWWAFREHP 1184

Query: 107  GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-D 165
            G  ++ IA  +  +K      +  W + L       M  L+   S     ++   + I  
Sbjct: 1185 GSKVVYIAPMKALVKE----RLKDWGARLVEPMHINMIELTGDTSPDSKTIMGADIIITT 1240

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + +    R +   +       +  +   V  DE
Sbjct: 1241 PEKWDGITRNWRTRK-------YVQNVSLVIIDE 1267


>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1721

 Score = 38.6 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT     ++L L S  P   I+  A +   + N L   +S   +  P R   E++ +
Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVLRRYLSLNPTHPPLRISTEIRKV 1391

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-----G-----PHNTHGMAVF 196
            S   + +  + +             T +     +    V     G       N     V 
Sbjct: 1392 SPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMFDIVI 1451

Query: 197  NDEAS 201
             DEAS
Sbjct: 1452 IDEAS 1456


>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
 gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
          Length = 441

 Score = 38.6 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 30/251 (11%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I AGRG GKT   A  +  +  +     I  +++S  + +  +    S  L+  P     
Sbjct: 55  IMAGRGFGKTRAGAEWVRSIAESHSEARIALVSSSLAEARAVMVEGESGLLACSP----- 109

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA- 200
                            E S+             YS   P+   GP  +H    + DE  
Sbjct: 110 ----------PDRRPEFEPSLRRVRFPNGAEAHLYSAGEPEALRGPQFSHA---WCDEVG 156

Query: 201 ------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
                 S      +  ++G     +P     +T+  R +      +     +     +  
Sbjct: 157 KWPISHSRATRAWDNLLMGLRLGDDPRIA--VTTTPRAVPLVQRLLKQETSQATAVTRGS 214

Query: 255 TRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T      + + F E I   +   S + R EI G+  +         + +E++   EA   
Sbjct: 215 TYDNSANLPARFLEAIADEF-AGSQLGRQEIEGELIEDIEGALWSRSLLEQS-KEEAGPP 272

Query: 314 LYAPLIMGCDI 324
            +  +++G D 
Sbjct: 273 GFRRIVIGVDP 283


>gi|315654463|ref|ZP_07907371.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491498|gb|EFU81115.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 424

 Score = 38.6 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSIICIANSET 118
           + +  +    +    P +   AI   +G+GKT T   W+   L    P M  +  A++  
Sbjct: 11  DYLPRYLDEELRELFPQLPAIAIDGAKGVGKTETAQRWVEHVLALDNPEMGQLIAADTVN 70

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           QL       + +W    P             P+ +        +     H          
Sbjct: 71  QLTKYATTCIDEWQKYPPVWDAVRRLVDQQTPNRFLLTGSATPVSGVDTHSGAGRIASLR 130

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
            RP +     +T      +   SG  +I  ++I G  T+ 
Sbjct: 131 LRPLSLAERPSTSPRVFISRLFSGDAEISGETIFG-LTDY 169


>gi|67611038|ref|XP_667129.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658236|gb|EAL36904.1| hypothetical protein Chro.80234 [Cryptosporidium hominis]
          Length = 991

 Score = 38.6 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 50/237 (21%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             GK + +     + Q   ++  D+    N+N         +++AGRG GK+     + L
Sbjct: 263 EIGKVISNCITFDQAQT-VLKMADIIIQKNMNAI------ISLTAGRGRGKSAALG-LSL 314

Query: 100 WLISTRPGMSIICIANSETQLKNTL-WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
               ++   +I   A S   +     + E+            FE+       S    +  
Sbjct: 315 ACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEHKHFELVRSKTIDSRVGGDFS 374

Query: 159 EQSMGIDSKHYTITCR-TYSEERPDTFVGPHNTHGMA-----VFNDEASGTPDIINKSIL 212
                +   +     R T    +P+        + +      V  DEA+  P  I K  L
Sbjct: 375 HSVSRLIRVNIFKDHRQTIQYIKPE-------DYHLVSQAEIVVMDEAAAIPLPIVKKFL 427

Query: 213 G------------------FFT----------ELNPNRFWIMTSNTRRLNGWFYDIF 241
           G                    +           LN N    ++SNT   + +F + F
Sbjct: 428 GNHLFIFSSTINGYEGTGRALSLKLINDLKKKSLNNNGNLPISSNTDNQSDYFVNSF 484


>gi|206895210|ref|YP_002247305.1| cobalt import ATP-binding protein CbiO 2 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737827|gb|ACI16905.1| cobalt import ATP-binding protein CbiO 2 [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 271

 Score = 38.6 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLW---AEVSKWLSMLP 136
            G G GKTTL   +   L+ T   + I    I  A  + Q+K  +     E     S++ 
Sbjct: 34  GGNGAGKTTLARVIKGLLLPTSGKVLIDGMEISTAGRDYQIKVGIVFQNPENQIVASVVE 93

Query: 137 HRHWFEMQSLSLHPSGW--YAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGM 193
               F  ++L L P       E   +++G+ D +H  +   +  +++     G       
Sbjct: 94  EDVAFGPENLGLSPREIKERVESSLKTVGLWDLRHRPVHALSGGQKQRLAIAGILALRPS 153

Query: 194 AVFNDEASGTPDII--NKSILGFFTELNPNRFWIMT 227
            +  DEA+   D +   + +    +  N      +T
Sbjct: 154 YILFDEATALLDPVGRREVLETALSLANSVGVLWIT 189


>gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035]
 gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035]
          Length = 419

 Score = 38.6 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 83/283 (29%), Gaps = 45/283 (15%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNT-LWAEVSKW 131
           I  GRG GKT   A    W+ S   G           I  +  +  Q++   ++ E S  
Sbjct: 27  IMGGRGAGKTRAGA---EWVRSEVEGARPMDSGRCKRIALVGETIDQVREVMIFGE-SGI 82

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           L+  P     E Q+                            + +S   P+   GP    
Sbjct: 83  LACSPPDRRPEWQATR---------------KRLIWPNGAVAQAFSAHDPEGLRGPQFDG 127

Query: 192 GMAVFNDEASGT--PDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               + DE +           +  G      P    +  + T R  G   DI   P    
Sbjct: 128 A---WVDELAKWKRARETWDMLQFGLRLGEAPR---VCVTTTPRNVGVLKDILATPSTVT 181

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                +      +   F + + +RY   + + R E+ G    +  +       +E A  R
Sbjct: 182 SSAPTEA-NRAHLAESFLDEVRARY-AGTRLGRQELDGLLIDEAEDALWSPAMLEAA--R 237

Query: 309 EAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDW 348
                 +  +++  D    G    D+  ++         + DW
Sbjct: 238 VDTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPVQDW 280


>gi|145493391|ref|XP_001432691.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399805|emb|CAK65294.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 38.6 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGR 86
           F  F+      G + + ++ F+    W  E + A +       V+  N    + AI+   
Sbjct: 317 FDAFLEEQGDQGDEEQAVDKFTFNW-WCKEGIRANIAKIRQEFVDYHNLKPIRIAITGPP 375

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIIC------IANSETQLKNTL 124
           GIGK+T+   +  +       +  +        +    QLK  L
Sbjct: 376 GIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTNL 419


>gi|145486706|ref|XP_001429359.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396451|emb|CAK61961.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 38.6 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGR 86
           F  F+      G + + ++ F+    W  E + A +       V+  N    + AI+   
Sbjct: 317 FDAFLEEQGDQGDEEQAVDKFTFNW-WCKEGIRANIAKIRQEFVDYHNLKPIRIAITGPP 375

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIIC------IANSETQLKNTL 124
           GIGK+T+   +  +       +  +        +    QLK  L
Sbjct: 376 GIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTNL 419


>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
 gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
 gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
          Length = 567

 Score = 38.2 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 77/272 (28%), Gaps = 38/272 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GKT   A  + W     P  ++I    +   ++            M+      + 
Sbjct: 199 GGRGAGKTFAGARWITWNALAYPSQALI--GPTLHDVREV----------MIEGPSGLKA 246

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEAS 201
                +   W     E S              +S E P++  G   H       + DE  
Sbjct: 247 MGGPAYRPRW-----EASRRRLVWPNGAVAYAFSAEDPESLRGPQFHAA-----WADEFC 296

Query: 202 GTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
             P       +   G     +P      T    R                      +   
Sbjct: 297 AWPKPAETLAMLRFGLRLGEDPRLVVTTTPKPHRA----LKTLMAEPGVALTRAGTSANA 352

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F   + S YG  + +A  E+ G   + +   F   +      +R A  D    +
Sbjct: 353 GNLAPAFLRTLASLYG-GTRLAAQELDGVVVETDGGLFRAEDLARCRAARPARLDR---V 408

Query: 319 IMGCD-IAGEGGDKT--VVVFRRGNIIEHIFD 347
           ++  D  A   GD    VVV RR +    + D
Sbjct: 409 VVAVDPPATATGDACGIVVVGRRDDRAFVLAD 440


>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
           L-1]
 gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
           L-1]
          Length = 438

 Score = 38.2 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 28/258 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AGRG GKT   A  +  +    P   I  +  +  + +  +   V     +L    W+  
Sbjct: 59  AGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVM---VEGASGVLAVSPWWNR 115

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE---- 199
            +               ++             +     ++  GP  +HG   + DE    
Sbjct: 116 PAFL------------PALRKLVWRNGAVATLFGAAEAESLRGPQFSHG---WADEIAKW 160

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A G     +  ++G    + P    + T+  R +      +     +             
Sbjct: 161 AGGQA-AWDNLMMGMRLGIAP--RVLATTTPRPVALVRGLVERNGSDVVVTRGRSADNAS 217

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +  GF   +   YG  + + R E+ G+  ++        + +E       +    A ++
Sbjct: 218 HLADGFLAAMERNYG-GTRLGRQELDGELIEEVEGALWSRDLLERC-RVAHVRGTLARVV 275

Query: 320 MGCD-IAGEGGDKTVVVF 336
           +  D  A   GD   +V 
Sbjct: 276 VAVDPPASVHGDACGIVV 293


>gi|302560409|ref|ZP_07312751.1| DNA/RNA helicase, superfamily II [Streptomyces griseoflavus Tu4000]
 gi|302478027|gb|EFL41120.1| DNA/RNA helicase, superfamily II [Streptomyces griseoflavus Tu4000]
          Length = 599

 Score = 38.2 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   M+            + P  F  A++   G GKTT    
Sbjct: 23  PWGTAGKL-------RAWQQGAMD--------KYIQTQPRDF-LAVATP-GAGKTTFALT 65

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  S    R   ++             
Sbjct: 66  LASWLLHHHVVQQVTVVAPTEH---------LKKQWSEAAARIGIKLD------------ 104

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G   K Y     TY+          H          V  DE   +G      ++
Sbjct: 105 -PEYSAGPLGKDYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 161

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 162 CLEAF--EPATRRLALTGTPFR 181


>gi|328773858|gb|EGF83895.1| hypothetical protein BATDEDRAFT_29142 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1016

 Score = 38.2 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK+      +     +    +I   + S   +K  L+  + K    L +  
Sbjct: 280 VTLTASRGRGKSASLGIAIA-SAISYGYSNIFITSPSPENIKT-LFEFIFKGFDALGYEE 337

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  +   D +      +T    +P  F G      + V  DE
Sbjct: 338 HLDYDIIQSTNPAFQKSIVRVNFFRDHR------QTIQWIQPSDF-GILAQAELLVI-DE 389

Query: 200 ASGTPDIINKSILG 213
           A+  P  + K +LG
Sbjct: 390 AAAIPLPVVKKLLG 403


>gi|224586602|ref|YP_002640499.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
 gi|224497136|gb|ACN52769.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
          Length = 450

 Score = 38.2 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              +  +  Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIHTFTTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D +++  I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2009

 Score = 38.2 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L  +   ++
Sbjct: 1166 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVQDWRKRLTRQMGLKL 1221

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1222 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRD-------YVRKVSLVIIDE 1271


>gi|308449036|ref|XP_003087834.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
 gi|308252534|gb|EFO96486.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
          Length = 411

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 21/183 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ     A+     S +  +         S  R +GKT     ++  L    P +++I
Sbjct: 47  DEWQAGLGRAMLAKRASGLYAAGIGGIII--SICRQVGKTFTIGSIIFALCIIFPKLTVI 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYT 170
             A+                 S   +  +  +Q  +       +   + +  G     + 
Sbjct: 105 WTAH----------------HSRTSNETFESLQGFAQKRKVAPHIRQIRRVNGQQQITFK 148

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
              R     R   F G        V  DEA    +   + ++   T  + N   I+    
Sbjct: 149 NGSRIMFGARESGF-GRGFAGVDVVVADEAQILGNKALEDMVPA-TNASKNPLIILMGTP 206

Query: 231 RRL 233
            R 
Sbjct: 207 PRP 209


>gi|319943331|ref|ZP_08017613.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
           51599]
 gi|319743146|gb|EFV95551.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
           51599]
          Length = 220

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 47/166 (28%), Gaps = 15/166 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ     A   H  +            AI    G GKTTL A +     S  PG  ++
Sbjct: 30  TAWQASPRTAFVDHLMARAGTHAGRPAIIAIDGRSGSGKTTLTAALA----SVVPGAQVL 85

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKH 168
                   L + +W E              E+ +     L P  W     E S+ I +  
Sbjct: 86  -------HLDDLIWNEPLYQWDQQLVAALSELHTTGALDLIPHPWREHGREGSIRITAGA 138

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
             +     +        G  + H      D+ +   DI      G 
Sbjct: 139 PLVIVEG-TGAGLQAIRGLIDLHVWVQTGDDVTEHRDISRDIAEGT 183


>gi|329936550|ref|ZP_08286286.1| DNA or RNA helicases of superfamily II [Streptomyces
           griseoaurantiacus M045]
 gi|329304065|gb|EGG47947.1| DNA or RNA helicases of superfamily II [Streptomyces
           griseoaurantiacus M045]
          Length = 611

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   M+              P  F  A++   G GKTT    
Sbjct: 35  PWGTAGKL-------RAWQQGAMD--------RYLQQQPRDF-LAVATP-GAGKTTFALT 77

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  +    R   ++             
Sbjct: 78  LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 116

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G   + Y     TY+          H          V  DE   +G      ++
Sbjct: 117 -PEYSAGPLGREYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 173

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 174 CLEAF--EPATRRLALTGTPFR 193


>gi|315446103|ref|YP_004078982.1| nuclease-like protein [Mycobacterium sp. Spyr1]
 gi|315264406|gb|ADU01148.1| nuclease-like protein [Mycobacterium sp. Spyr1]
          Length = 551

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 5/181 (2%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    V     S + ++   + +  I  G G GKT L       L      ++++C +  
Sbjct: 199 EDAADVLTEQQSVILDAIKLLHRVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYS-- 256

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L + L    + W       +  E   L                    + +     + 
Sbjct: 257 -HGLASYLERITATWNRRHRPAYVGEFHDLGKQWGAPAGPDESVRNDETVRFWEHDLPSQ 315

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                      H     A+  DEA    D     +L    +      ++ +   +R+   
Sbjct: 316 MTRLATQLDPGHRFD--AIVVDEAQDFADAWWDPLLAALKDDETGGLYVFSDEGQRVFDR 373

Query: 237 F 237
           F
Sbjct: 374 F 374


>gi|218202744|ref|YP_002364661.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
 gi|218164272|gb|ACK74336.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
          Length = 450

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              ++ +  Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIDTFTTYNFTTYDNVLLSKGFIETQEKLY-KDMPTYKARVLLGEWIASIDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D +++  I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|154335334|ref|XP_001563907.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1080

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M+      +   +I+C A +   ++  L+    + L  L +R 
Sbjct: 305 CVVTAGRGRGKSAALGMMVA-GAIAQGYSNIMCTAPTPENVQT-LFEFAIRGLKELGYRE 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +    T +  S      F             DE
Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQ---TLQFVSATDTAKFAQAE-----VCVIDE 414

Query: 200 ASGTPDIINKSILG 213
           A+  P  + K ILG
Sbjct: 415 AAALPLPLVKRILG 428


>gi|328854149|gb|EGG03283.1| hypothetical protein MELLADRAFT_49560 [Melampsora larici-populina
           98AG31]
          Length = 1103

 Score = 37.8 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+      +          +I   + S   LK   +  + K L  + +  
Sbjct: 290 VALTAARGRGKSAALGLAIT-AAIAHSYSNIFVTSPSPENLKTV-FEFIFKGLDAIGYEE 347

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +          W+       + ID          Y E +    +G        V  DE
Sbjct: 348 HLDYDIHQSTNPEWH----NCVVRIDIFRQHRQTIQYIEPQDYKVLGQAE----LVVIDE 399

Query: 200 ASGTP 204
           A+  P
Sbjct: 400 AAAIP 404


>gi|237794637|ref|YP_002862189.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
           str. 657]
 gi|229260548|gb|ACQ51581.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
           str. 657]
          Length = 543

 Score = 37.8 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMS---IICIANSETQLKNTL--WAEVSKWLSMLPHRH 139
           GRG GK    + +  +  ++  G     +  +ANSE Q K +     EV      L    
Sbjct: 94  GRGAGKNGFISALSWYFTTSFHGKRGYNVDIVANSEEQAKTSFDDVYEVIDDNKRLQKAF 153

Query: 140 WFEMQSLSLHPSGWYAEL 157
           ++  + +    +  Y + 
Sbjct: 154 YYTKEKIVYKKTRSYLKF 171


>gi|322498208|emb|CBZ33283.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1065

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLPH 137
           C ++AGRG GK+      +      +   +IIC A +   ++      +   K L     
Sbjct: 287 CVVTAGRGRGKSAALGMTIA-GAIAQGYSNIICTAPTPENVQTLFEFAIRGLKELGYRER 345

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             +  +Q +S   +  +  +        +  +     T    + +               
Sbjct: 346 TDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAADTAKFAQAE-----------LCVI 394

Query: 198 DEASGTPDIINKSILG 213
           DEA+  P  + K ILG
Sbjct: 395 DEAAALPLTLVKRILG 410


>gi|146083626|ref|XP_001464793.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068887|emb|CAM59821.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1065

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLPH 137
           C ++AGRG GK+      +      +   +IIC A +   ++      +   K L     
Sbjct: 287 CVVTAGRGRGKSAALGMTIA-GAIAQGYSNIICTAPTPENVQTLFEFAIRGLKELGYRER 345

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             +  +Q +S   +  +  +        +  +     T    + +               
Sbjct: 346 TDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAADTAKFAQAE-----------LCVI 394

Query: 198 DEASGTPDIINKSILG 213
           DEA+  P  + K ILG
Sbjct: 395 DEAAALPLTLVKRILG 410


>gi|5802839|gb|AAD51802.1|AF170560_1 SdrA [Streptomyces coelicolor A3(2)]
          Length = 597

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 22  PWGTAGKL-------RAWQQGAME--------KYLQDQPRDF-LAVATP-GAGKTTFALT 64

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  +    R   ++             
Sbjct: 65  LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 103

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G  S+ Y     TY+          H          V  DE   +G      ++
Sbjct: 104 -PEYSAGPLSREYQGIAITYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 160

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 161 CLEAF--EPATRRLALTGTPFR 180


>gi|21221383|ref|NP_627162.1| hypothetical protein SCO2936 [Streptomyces coelicolor A3(2)]
 gi|256787436|ref|ZP_05525867.1| hypothetical protein SlivT_23354 [Streptomyces lividans TK24]
 gi|289771334|ref|ZP_06530712.1| hypothetical protein SSPG_04602 [Streptomyces lividans TK24]
 gi|5531385|emb|CAB51017.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289701533|gb|EFD68962.1| hypothetical protein SSPG_04602 [Streptomyces lividans TK24]
          Length = 598

 Score = 37.8 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 22  PWGTAGKL-------RAWQQGAME--------KYLQDQPRDF-LAVATP-GAGKTTFALT 64

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  +    R   ++             
Sbjct: 65  LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 103

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G  S+ Y     TY+          H          V  DE   +G      ++
Sbjct: 104 -PEYSAGPLSREYQGIAITYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 160

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 161 CLEAF--EPATRRLALTGTPFR 180


>gi|50312271|ref|XP_456167.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645303|emb|CAG98875.1| KLLA0F24398p [Kluyveromyces lactis]
          Length = 1055

 Score = 37.4 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 30/212 (14%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           P+         QEL E+ +  E V                   L   S+        +  
Sbjct: 221 PKDDEEISPKNQELKELKVSLEDV--------------QPAGSLVALSKTVNQAHAILTF 266

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +D      +N++       A++AGRG GK+      +     +    +I   + S   LK
Sbjct: 267 IDAISEKTLNST------VALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLK 319

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L+  + K    L ++   +   +      +   ++   +  + +              
Sbjct: 320 T-LFEFIFKGFDALGYQEHIDYDIIQSTNPSFNKAIVRVDIKREHRQTIQYIIPNDSH-- 376

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
              +G        V  DEA+  P  + K +LG
Sbjct: 377 --VLGQAE----LVVIDEAAAIPLPLVKKLLG 402


>gi|313233376|emb|CBY24491.1| unnamed protein product [Oikopleura dioica]
          Length = 985

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 31/157 (19%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISA------GRGIGKTTLNAWMMLWLISTRPGM 108
           Q EF+   D      V +   T  + A+ +        G GKT + A ++   +   P  
Sbjct: 41  QREFVFPDD----FPVRSYQQTAARAALKSNCLVCLPTGAGKTLVAAAVIRNFLDWHPNS 96

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             I +A                W   L ++    +   +  PS     +   +   + + 
Sbjct: 97  QAIFVA----------------WTKPLLNQQKEALTRDAGIPSSQSCVINGHTSAKNREE 140

Query: 169 YTITCRT--YSEERPDTFVGP---HNTHGMAVFNDEA 200
           +  TCR    + +  +   G    +      V  DEA
Sbjct: 141 WYSTCRLICATPQTINNDAGKNLINMQRIKLVIVDEA 177


>gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis ATCC 18188]
          Length = 2024

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270


>gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis ER-3]
          Length = 2024

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270


>gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis SLH14081]
 gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis SLH14081]
          Length = 2024

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270


>gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 739

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 38/167 (22%)

Query: 48  FSQPHR-----WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
           F  P       WQ            +             I+ G G GKT   A ++  ++
Sbjct: 235 FGGPPAPDRFDWQRSACAIALRGRLAL------------ITGGPGTGKTYTVARLLALVM 282

Query: 103 STRPGM---SIICIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  P      I   A +     +LK ++ + + +  + LP    + +    L  S    +
Sbjct: 283 AVHPQPQALRIALAAPTGKAAARLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHK 342

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           LL      D++ +    R             H      +  DEAS  
Sbjct: 343 LLGARP--DTRRFGRDAR-------------HPLEVDLLVVDEASMV 374


>gi|226322130|ref|ZP_03797652.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|226232450|gb|EEH31207.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
          Length = 450

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           + F G   ++   +F +EA+       + +L              T N      +F   +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
              ++ +  Y   T     +  GF E     Y  D    +  + LG++     + F   N
Sbjct: 212 IDNIDTFTTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
             +        D +++  I   D A   GGD T +    R  + 
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306


>gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 2022

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W   +      ++
Sbjct: 1162 SPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRE----RVQDWRKRITTAMGLKL 1217

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1218 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1267


>gi|291453805|ref|ZP_06593195.1| hypothetical protein SSHG_04098 [Streptomyces albus J1074]
 gi|291356754|gb|EFE83656.1| hypothetical protein SSHG_04098 [Streptomyces albus J1074]
          Length = 593

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   M+              P  F  A++   G GKTT    
Sbjct: 18  PWGTAGKL-------RAWQQAAMD--------KYVQEQPRDF-LAVATP-GAGKTTFALT 60

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  W++       +  +A +E          + K  +    R   ++             
Sbjct: 61  LASWMLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 99

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 100 -PEYSAGPLSKEYQGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 156

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 157 CLEAF--EPATRRLALTGTPFR 176


>gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2030

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 84   AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L      ++
Sbjct: 1164 SPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRE----RVQDWRKRLTAAMGLKL 1219

Query: 144  QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              L+   +     + +  + I   + +    R++           +      V  DE
Sbjct: 1220 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1269


>gi|294629610|ref|ZP_06708170.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832943|gb|EFF91292.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 596

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME              P  F  A++   G GKTT    
Sbjct: 20  PWGTAGKL-------RAWQQGAME--------KYLQEQPRDF-LAVATP-GAGKTTFALT 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  +    R   ++             
Sbjct: 63  LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARVGIKLD------------ 101

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             E S G   + Y     TY+          H          V  DE   +G      ++
Sbjct: 102 -PEYSAGPLGREYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178


>gi|209544598|ref|YP_002276827.1| hypothetical protein Gdia_2467 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532275|gb|ACI52212.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 491

 Score = 37.4 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 26/199 (13%)

Query: 87  GIGKTTLNAW-MMLWLISTRPGMSII------CIANSETQLKNTLWAEVSKWLSMLPHRH 139
           G GK++   W M+L  +   PG   +       I NS  QL++T    V +W   +    
Sbjct: 32  GSGKSSGCVWEMVLRGLKQAPGPDGVRRSRWAVIRNSYRQLEDTTIRTVHQWFPPMQFGR 91

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
           W         PS     +   +   D K   I     + +RPD      +      + +E
Sbjct: 92  W--------KPSEHSYTINRLAAQGDEKPAEIELLFRALDRPDQVGNLLSLELTGAWINE 143

Query: 200 ASGTPDIINKSILGFF----TELNPNRFW---IMTSNTRRLNGWFYDIF----NIPLEDW 248
           A   P  + +++ G       + +    W   IM +N       +Y  F    +    + 
Sbjct: 144 AREVPWAVIEAVQGRVGRYPAKRDGGATWSGIIMDTNPPDAESEWYKFFEEKDHTDAVEA 203

Query: 249 KRYQIDTRTVEGIDSGFHE 267
               I   TVE     F +
Sbjct: 204 IAQVIPGMTVERYARIFKQ 222


>gi|260431843|ref|ZP_05785814.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415671|gb|EEX08930.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 176

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 182 DTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +   G        +  DEA    PD    +        +  R +++++     +G+FY+ 
Sbjct: 49  ENARGETAD---LIIGDEACFIQPDEALTAFFPM--RRSTGRIFLLSTPNGTRSGYFYET 103

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPH 299
           +          +I  R+++         I       SD   R E L ++      + +  
Sbjct: 104 WESDA---NVRRIRARSMDTTREDRLAQIEFDRRTMSDATFRREHLCEWVGAGE-SLLSW 159

Query: 300 NYIEEAMS 307
           N +E AM 
Sbjct: 160 NTLERAMQ 167


>gi|331245260|ref|XP_003335267.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309314257|gb|EFP90848.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1092

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK+      +  +       +I   + S   LK  L+  + K L+ L +  
Sbjct: 291 VTLTASRGRGKSAALGMAIA-VAVAHSYSNIFVTSPSPENLKT-LFEFIFKSLTALGYEE 348

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +          W   ++   +  + +      +T    +P  +          V  DE
Sbjct: 349 HLDYNVHQSSNPEWKNCIVRVDIFRNHR------QTIQYIQPQDYKVLGQAE--LVVIDE 400

Query: 200 ASGTP 204
           A+  P
Sbjct: 401 AAAIP 405


>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 424

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A+++  LI   P ++ +CI  ++  L+ +++ ++   +S
Sbjct: 22  NPKILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAIS 80

Query: 134 MLPHRHWFEMQS----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
                 +F+       ++  P G Y            K    +   ++    +       
Sbjct: 81  EQGLERYFKFNKSPLRITYIPRGNYIVFRGAQNPERIKSLKDSRFPFAIGWIEELAEFKT 140

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLE 246
                   DE      I N  + G   +    +F+   +  +R   W    Y+    P  
Sbjct: 141 E-------DE---VKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPKN 190

Query: 247 DWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            +      T      I   F     +         R E LG+
Sbjct: 191 TF--VHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 230


>gi|297194112|ref|ZP_06911510.1| type III restriction enzyme, res subunit [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152113|gb|EFH31533.1| type III restriction enzyme, res subunit [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 594

 Score = 36.3 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG   K          WQ   ME              P  F  A++   G GKTT    
Sbjct: 18  PWGTANKL-------RAWQQGAME--------KYLQEQPRDF-LAVATP-GAGKTTFALT 60

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       +  +A +E          + K  +    R   ++             
Sbjct: 61  LASWLLHHHVVQQVTVVAPTEH---------LKKQWAAAAARIGIKLD------------ 99

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
             + S G  SK Y     TY+          H          V  DE   +G      ++
Sbjct: 100 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 156

Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
            L  F      R   +T    R
Sbjct: 157 CLEAF--EPATRRLALTGTPFR 176


>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
 gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
 gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
 gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
          Length = 432

 Score = 35.9 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A+++  LI   P ++ +CI  ++  L+ +++ ++   +S
Sbjct: 30  NPQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAIS 88

Query: 134 MLPHRHWFEMQS----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
                 +F+       ++  P G Y            K    +   ++    +       
Sbjct: 89  EQGLERYFKFNKSPLRITYIPRGNYIVFRGAQNPERIKSLKDSRFPFAIGWIEELAEFKT 148

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLE 246
                   DE      I N  + G   +    +F+   +  +R   W    Y+    P  
Sbjct: 149 E-------DE---VKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSN 198

Query: 247 DWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            +      T      I   F     +         R E LG+
Sbjct: 199 TF--VHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 238


>gi|217970261|ref|YP_002355495.1| exodeoxyribonuclease V, subunit alpha [Thauera sp. MZ1T]
 gi|217507588|gb|ACK54599.1| exodeoxyribonuclease V, alpha subunit [Thauera sp. MZ1T]
          Length = 683

 Score = 35.9 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 22/144 (15%)

Query: 79  KCAI-SAGRGIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLKNTLWAEVSKWLSM 134
           + +I + G G GKT   A ++  +++T P      I   A +             K  + 
Sbjct: 217 RLSILTGGPGTGKTYTAARLLALMLATHPAPERLRIALAAPT------------GKAAAR 264

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM- 193
           L       +Q+L     G + +L   +  I +            +    F   H  + + 
Sbjct: 265 LRQAIDGSLQALQRSL-GGHLDLAALTRRIGAARTLHALLGARPD-TRRFR-HHAGNPLD 321

Query: 194 --AVFNDEASGTPDIINKSILGFF 215
              V  DEAS     +  ++L   
Sbjct: 322 VDVVIVDEASMVHLEMMAALLEAL 345


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.129    0.365 

Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,772,568
Number of Sequences: 14124377
Number of extensions: 258892913
Number of successful extensions: 679973
Number of sequences better than 10.0: 653
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 557
Number of HSP's that attempted gapping in prelim test: 678964
Number of HSP's gapped (non-prelim): 829
length of query: 367
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 227
effective length of database: 2,865,380,850
effective search space: 650441452950
effective search space used: 650441452950
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 82 (36.3 bits)