HHsearch alignment for GI: 254781188 and conserved domain: pfam05225

>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.

Probab=91.21  E-value=0.33  Score=29.26  Aligned_cols=39  Identities=36%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf             99999999998589-23899961588988889999983398
Q gi|254781188|r   23 PELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKKDL   62 (185)
Q Consensus        23 ~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~kde   62 (185)
T Consensus         2 ee~l~~Al~av~~g~~S~~kAa~~ygIP-~sTL~~r~~g~~   41 (45)
T pfam05225         2 EEDLAEALEAVRNGKMSLRKAARKYGIP-RSTLWRRLRGKY   41 (45)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHCCCC
T ss_conf             7899999999991996799999997898-589999975634