HHsearch alignment for GI: 254781188 and conserved domain: pfam07141
>pfam07141 Phage_term_sma Putative bacteriophage terminase small subunit. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=91.04 E-value=0.81 Score=26.64 Aligned_cols=133 Identities=24% Similarity=0.362 Sum_probs=82.9
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH--------HHH
Q ss_conf 540246567644589999999999858923899961588988889999983398999999999997379--------999
Q gi|254781188|r 9 KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD--------LLA 80 (185)
Q Consensus 9 ~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD--------~la 80 (185)
T Consensus 4 qkggrptilpkmyeeplfsqiidkiesgcndreiytslhc-saktfrkwrddni---kaydeakgiargnllelaesala 79 (174)
T pfam07141 4 QKGGRPTILPKMYEEPLFSQIIDKIESGCNDREIYTSLHC-SAKTFRKWRDDNI---KAYDEAKGIARGNLLELAESALA 79 (174)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHCCH---HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 6689874456653123799999999748851454554201-4788887631324---56566403000029999999875
Q ss_pred HHHH----HHCCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986----200230056403603789979999889---999987-64665343----420344331346788999999
Q gi|254781188|r 81 EELL----EEPAPTAEELANPVFYSKMRDRKQRMG---TFLLEK-LSNQKYGP----RVSVESKHTIDLRPAIERLRE 146 (185)
Q Consensus 81 EEIL----E~~a~~~ee~~~~~~~~~lr~~~~~~~---~w~l~k-~~p~~yg~----rvs~e~~h~~~~~~~~~~~~~ 146 (185)
T Consensus 80 skltvrtlketetiydadgn-vekvkvkekeldkdslvammvakagnpelynptewrrlqqeessahdlkakieeldd 156 (174)
T pfam07141 80 SKLTVRTLKETETIYDADGN-VEKVKVKEKELDKDSLVAMMVAKAGNPELYNPTEWRRLQQEESSAHDLKAKIEELDD 156 (174)
T ss_pred HHHHHHHHCCCCEEECCCCC-EEEEEECHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 33213301132125637898-655651054315365899999853895546838998988754104568887776532