Query gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 92 out of 94 Neff 3.5 Searched_HMMs 33803 Date Wed Jun 1 23:19:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781188.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3hef_A Gene 1 protein; bacter 99.8 5.3E-21 1.6E-25 161.1 10.0 126 7-141 6-138 (143) 2 >2elh_A CG11849-PA, LD40883P; 97.2 0.00032 9.4E-09 49.0 3.4 47 16-63 18-64 (87) 3 >1jko_C HIN recombinase, DNA-i 97.0 0.00077 2.3E-08 46.4 4.0 46 12-62 1-46 (52) 4 >2cob_A LCOR protein; MLR2, KI 95.5 0.021 6.3E-07 36.7 4.6 43 17-60 10-53 (70) 5 >1hlv_A CENP-B, major centrome 95.5 0.036 1.1E-06 35.2 5.6 57 15-72 2-60 (67) 6 >2jn6_A Protein CGL2762, trans 95.3 0.021 6.3E-07 36.8 4.0 41 20-61 5-47 (56) 7 >1pdn_C Protein (PRD paired); 94.7 0.033 9.9E-07 35.5 3.8 41 21-62 2-42 (53) 8 >2rn7_A IS629 ORFA; helix, all 94.3 0.044 1.3E-06 34.7 3.5 44 18-62 4-55 (108) 9 >2k27_A Paired box protein PAX 92.0 0.099 2.9E-06 32.3 2.5 41 21-62 26-66 (75) 10 >2hku_A A putative transcripti 91.3 1.1 3.2E-05 25.3 7.2 71 24-95 27-97 (215) 11 >2nx4_A Transcriptional regula 90.0 0.78 2.3E-05 26.3 5.4 77 3-85 1-78 (194) 12 >2v57_A TETR family transcript 89.6 0.89 2.6E-05 25.9 5.5 72 23-95 17-90 (190) 13 >3g7r_A Putative transcription 88.1 1.6 4.7E-05 24.3 5.9 68 23-91 38-109 (221) 14 >2r0q_C Putative transposon TN 87.7 0.52 1.5E-05 27.5 3.2 36 24-60 13-48 (59) 15 >2yve_A Transcriptional regula 86.6 1.9 5.7E-05 23.7 5.7 67 28-95 15-82 (185) 16 >2qwt_A Transcriptional regula 86.4 2.7 8E-05 22.7 9.2 61 24-85 20-80 (196) 17 >2ezh_A Transposase; DNA-bindi 86.1 1.3 4E-05 24.7 4.7 49 15-63 2-61 (75) 18 >2pbx_A Hemagglutinin/protease 85.4 3 9E-05 22.4 8.2 66 29-95 29-95 (203) 19 >2hyj_A Putative TETR-family t 85.0 1 3E-05 25.6 3.6 47 26-73 21-68 (200) 20 >3jsj_A Putative TETR-family t 84.9 1.5 4.4E-05 24.4 4.4 51 24-75 16-66 (190) 21 >2rek_A Putative TETR-family t 84.5 2.9 8.6E-05 22.5 5.7 57 24-81 23-79 (82) 22 >1sgm_A Putative HTH-type tran 84.0 3.2 9.5E-05 22.2 5.8 71 24-95 13-85 (191) 23 >3iuv_A Uncharacterized TETR f 83.8 1.6 4.8E-05 24.2 4.2 62 23-85 13-78 (201) 24 >3knw_A Putative transcription 83.4 3.7 0.00011 21.8 6.5 70 25-95 22-92 (212) 25 >1t33_A Putative transcription 82.6 3.9 0.00012 21.6 9.0 61 24-85 19-79 (224) 26 >1rkt_A Protein YFIR; transcri 82.4 2.8 8.3E-05 22.6 5.0 58 26-84 21-79 (82) 27 >1t56_A EThr repressor; helix- 82.1 4.1 0.00012 21.5 6.7 61 25-86 29-93 (216) 28 >3e7q_A Transcriptional regula 82.1 1.2 3.6E-05 25.0 3.0 58 27-85 24-82 (215) 29 >2id6_A Transcriptional regula 81.5 3.9 0.00012 21.6 5.4 55 30-85 19-73 (77) 30 >2dg8_A Putative TETR-family t 81.4 4.4 0.00013 21.3 8.3 71 24-95 13-87 (193) 31 >3geu_A Intercellular adhesion 80.9 3 8.9E-05 22.4 4.7 69 26-95 12-81 (189) 32 >2w53_A Repressor, SMet; antib 80.8 1.9 5.5E-05 23.8 3.6 59 26-85 20-79 (219) 33 >2g3b_A Putative TETR-family t 80.2 2.4 7.1E-05 23.1 4.0 68 25-93 11-79 (208) 34 >2fd5_A Transcriptional regula 80.0 1.9 5.6E-05 23.7 3.4 49 28-77 19-67 (75) 35 >1pb6_A Hypothetical transcrip 79.5 5 0.00015 20.9 8.5 57 26-83 27-84 (212) 36 >3g5g_A Regulatory protein; tr 78.9 5.2 0.00015 20.8 5.4 61 24-85 28-93 (99) 37 >3b81_A Transcriptional regula 78.5 1.5 4.3E-05 24.5 2.5 44 28-72 22-66 (80) 38 >2zcx_A SCO7815, TETR-family t 78.4 5.4 0.00016 20.7 7.8 61 24-85 27-91 (231) 39 >1vi0_A Transcriptional regula 78.4 5.4 0.00016 20.7 6.1 66 28-94 19-85 (206) 40 >3f1b_A TETR-like transcriptio 77.8 5.6 0.00017 20.6 9.9 69 26-95 23-92 (203) 41 >3f52_A CLP gene regulator (CL 77.6 5.7 0.00017 20.5 6.4 69 21-90 25-98 (117) 42 >3c3w_A Two component transcri 77.4 2.1 6.1E-05 23.5 3.0 34 26-60 6-39 (47) 43 >2rae_A Transcriptional regula 77.2 1.6 4.7E-05 24.3 2.3 46 23-69 20-69 (207) 44 >1ui5_A A-factor receptor homo 77.0 5.9 0.00018 20.4 8.8 71 24-95 16-87 (215) 45 >2i10_A Putative TETR transcri 76.8 3 8.9E-05 22.4 3.7 44 24-68 15-62 (68) 46 >2gfn_A HTH-type transcription 76.6 6.1 0.00018 20.3 6.3 57 27-84 19-76 (209) 47 >3gzi_A Transcriptional regula 76.4 6.1 0.00018 20.3 9.5 80 4-85 2-85 (218) 48 >3cjd_A Transcriptional regula 75.2 6.6 0.0002 20.1 9.2 61 24-85 16-80 (198) 49 >3bjb_A Probable transcription 75.0 2 5.9E-05 23.6 2.3 61 24-85 26-90 (207) 50 >2gen_A Probable transcription 74.9 6.7 0.0002 20.1 11.9 69 26-95 16-85 (197) 51 >3frq_A Repressor protein MPHR 74.4 5.1 0.00015 20.9 4.3 48 26-74 17-65 (195) 52 >2id3_A Putative transcription 74.0 6.9 0.0002 20.0 4.9 44 24-68 44-91 (225) 53 >1mkm_A ICLR transcriptional r 73.8 5.8 0.00017 20.5 4.5 38 22-60 6-46 (64) 54 >1jhf_A LEXA repressor; LEXA S 73.8 4.6 0.00014 21.1 4.0 40 22-61 8-50 (72) 55 >2uxu_A HTH-type transcription 73.8 7.1 0.00021 19.9 6.4 61 24-85 18-79 (210) 56 >2qtq_A Transcriptional regula 73.8 7.1 0.00021 19.9 6.6 46 23-69 19-68 (81) 57 >1x3u_A Transcriptional regula 73.2 3.7 0.00011 21.8 3.4 35 25-60 20-54 (79) 58 >3he0_A Transcriptional regula 72.2 4.8 0.00014 21.1 3.7 56 24-83 15-74 (196) 59 >3kkd_A Transcriptional regula 72.2 4.3 0.00013 21.4 3.5 61 24-85 39-103 (237) 60 >3him_A Probable transcription 71.8 7.9 0.00023 19.6 5.3 67 27-94 26-93 (211) 61 >2fbq_A Probable transcription 71.7 8 0.00024 19.6 8.3 68 25-93 15-83 (235) 62 >3eup_A Transcriptional regula 71.5 6.1 0.00018 20.4 4.2 63 27-90 21-84 (204) 63 >2q24_A Putative TETR family t 71.3 8.1 0.00024 19.5 10.4 60 25-85 23-82 (194) 64 >1a04_A Nitrate/nitrite respon 71.2 3.6 0.00011 21.8 3.0 36 24-60 29-64 (87) 65 >1lmb_3 Protein (lambda repres 71.0 2.4 7.2E-05 23.0 2.0 65 24-89 17-86 (92) 66 >2ia2_A Putative transcription 70.8 2.9 8.5E-05 22.5 2.4 38 22-60 19-59 (86) 67 >2zb9_A Putative transcription 70.2 7.2 0.00021 19.9 4.3 35 35-70 42-76 (85) 68 >3f0c_A TETR-molecule A, trans 69.6 8.8 0.00026 19.3 10.1 71 24-95 15-89 (216) 69 >3f6w_A XRE-family like protei 69.1 9 0.00027 19.2 4.8 51 32-83 23-77 (83) 70 >1b0n_A Protein (SINR protein) 68.8 5.4 0.00016 20.7 3.4 49 32-81 10-63 (65) 71 >2ibd_A Possible transcription 67.7 9.6 0.00029 19.0 9.9 70 25-95 22-92 (204) 72 >2jj7_A Hemolysin II regulator 67.6 5.9 0.00018 20.4 3.4 39 29-68 19-58 (70) 73 >2np3_A Putative TETR-family r 67.6 2.9 8.4E-05 22.5 1.8 69 24-93 34-106 (212) 74 >2eh3_A Transcriptional regula 67.3 9.8 0.00029 19.0 6.7 55 26-81 11-66 (179) 75 >3ccy_A Putative TETR-family t 67.3 9.8 0.00029 19.0 9.3 72 23-95 17-92 (203) 76 >1gdt_A GD resolvase, protein 67.2 6.5 0.00019 20.2 3.5 35 26-61 7-41 (42) 77 >2o0y_A Transcriptional regula 66.9 2.9 8.6E-05 22.5 1.7 38 22-60 21-61 (95) 78 >2np5_A Transcriptional regula 66.7 10 0.0003 18.9 7.7 59 24-83 13-75 (203) 79 >3dew_A Transcriptional regula 66.7 5.1 0.00015 20.9 2.9 36 34-70 26-61 (72) 80 >2fq4_A Transcriptional regula 66.6 8 0.00024 19.5 3.9 45 24-69 16-64 (73) 81 >1je8_A Nitrate/nitrite respon 66.4 4.9 0.00014 21.0 2.8 36 24-60 24-59 (82) 82 >1fse_A GERE; helix-turn-helix 66.4 4.9 0.00015 21.0 2.8 36 24-60 14-49 (74) 83 >3c07_A Putative TETR-family t 66.0 10 0.00031 18.8 8.7 70 24-94 45-118 (273) 84 >3dpj_A Transcription regulato 65.6 11 0.00031 18.7 6.0 56 24-83 12-71 (79) 85 >2qco_A CMER; transcriptional 65.4 2.2 6.6E-05 23.3 0.9 59 26-85 22-81 (210) 86 >3bqz_B HTH-type transcription 64.5 11 0.00033 18.6 7.3 42 28-70 13-55 (71) 87 >2d6y_A Putative TETR family r 63.1 12 0.00035 18.4 5.6 41 27-68 19-59 (74) 88 >2r1j_L Repressor protein C2; 63.0 8.1 0.00024 19.5 3.4 49 32-81 14-66 (68) 89 >2ef8_A C.ECOT38IS, putative t 63.0 9 0.00027 19.2 3.6 61 24-85 10-75 (84) 90 >3klo_A Transcriptional regula 62.5 8.6 0.00025 19.4 3.4 35 25-60 9-43 (71) 91 >2ras_A Transcriptional regula 62.4 2.4 7.1E-05 23.0 0.6 38 29-67 23-61 (66) 92 >2q0o_A Probable transcription 62.1 7.1 0.00021 19.9 3.0 35 25-60 7-41 (64) 93 >2pz9_A Putative regulatory pr 62.1 12 0.00036 18.3 6.1 45 23-68 33-81 (226) 94 >3c57_A Two component transcri 61.4 7.4 0.00022 19.8 3.0 36 24-60 30-65 (95) 95 >3clc_A Regulatory protein; pr 61.4 13 0.00037 18.2 5.8 64 21-85 8-76 (82) 96 >2eby_A Putative HTH-type tran 61.3 12 0.00035 18.4 3.9 63 22-85 8-76 (96) 97 >2rnj_A Response regulator pro 61.0 5.2 0.00015 20.8 2.1 36 24-60 32-67 (91) 98 >3fym_A Putative uncharacteriz 60.9 12 0.00036 18.4 4.0 60 31-91 11-80 (130) 99 >3clo_A Transcriptional regula 60.6 7.8 0.00023 19.6 3.0 34 26-60 4-37 (60) 100 >1yio_A Response regulatory pr 60.1 7.7 0.00023 19.7 2.8 34 26-60 4-37 (65) 101 >1ntc_A Protein (nitrogen regu 59.9 11 0.00034 18.5 3.7 38 23-61 49-88 (91) 102 >2qko_A Possible transcription 59.2 6.5 0.00019 20.1 2.4 52 24-76 32-87 (215) 103 >2opt_A Actii protein; helical 58.9 10 0.0003 18.9 3.3 35 35-70 25-59 (67) 104 >2b5a_A C.BCLI; helix-turn-hel 58.6 14 0.00041 17.9 6.0 63 22-85 8-75 (77) 105 >1z4h_A TORI, TOR inhibition p 58.2 5 0.00015 20.9 1.6 23 38-61 12-34 (66) 106 >2ezk_A Transposase; DNA-bindi 56.9 8.6 0.00025 19.4 2.6 41 24-65 37-81 (99) 107 >3kz3_A Repressor protein CI; 56.7 10 0.00031 18.8 3.0 62 23-85 11-77 (80) 108 >1l3l_A Transcriptional activa 56.5 9.6 0.00028 19.0 2.8 35 25-60 4-38 (61) 109 >3b7h_A Prophage LP1 protein 1 56.0 13 0.00037 18.2 3.4 60 23-83 6-71 (78) 110 >2iu5_A DHAS, hypothetical pro 55.7 4.1 0.00012 21.5 0.8 45 24-69 17-65 (195) 111 >3bru_A Regulatory protein, TE 55.7 10 0.0003 18.9 2.9 35 23-58 33-71 (72) 112 >1utx_A CYLR2; DNA-binding pro 55.2 12 0.00035 18.4 3.2 47 31-78 9-59 (66) 113 >1y0u_A Arsenical resistance o 55.1 13 0.00039 18.1 3.4 37 23-60 30-66 (96) 114 >1p4w_A RCSB; solution structu 54.9 8.3 0.00025 19.4 2.3 38 21-60 35-72 (99) 115 >2g7u_A Transcriptional regula 54.6 9.5 0.00028 19.0 2.6 38 22-60 12-52 (75) 116 >3lsg_A Two-component response 53.7 15 0.00045 17.7 3.5 38 23-60 9-47 (58) 117 >2of7_A Putative TETR-family t 53.6 9.9 0.00029 18.9 2.5 36 28-64 59-95 (95) 118 >3bni_A Putative TETR-family t 53.6 14 0.00042 17.9 3.3 32 26-58 52-84 (85) 119 >1v4r_A Transcriptional repres 53.4 16 0.00048 17.5 3.6 42 18-60 9-58 (102) 120 >2jpc_A SSRB; DNA binding prot 53.3 13 0.00037 18.3 3.0 33 27-60 4-36 (61) 121 >1g2h_A Transcriptional regula 53.1 13 0.00039 18.1 3.1 35 26-61 23-57 (61) 122 >2zcm_A Biofilm operon icaabcd 52.8 17 0.00051 17.3 8.4 45 25-70 15-60 (192) 123 >1x57_A Endothelial differenti 52.3 6.8 0.0002 20.0 1.5 63 20-83 9-76 (91) 124 >3ljl_A Transcriptional regula 51.4 9.2 0.00027 19.1 2.1 39 24-63 18-60 (60) 125 >3bs3_A Putative DNA-binding p 51.1 8.7 0.00026 19.3 1.9 49 31-80 18-70 (76) 126 >1eto_A FIS, factor for invers 49.7 18 0.00053 17.2 3.3 32 29-61 18-50 (53) 127 >1umq_A Photosynthetic apparat 49.7 19 0.00057 17.0 3.6 35 26-61 43-78 (81) 128 >2hxo_A Putative TETR-family t 49.6 19 0.00057 17.0 6.9 46 23-69 19-68 (237) 129 >3cdl_A Transcriptional regula 49.1 15 0.00044 17.8 2.8 32 25-57 17-49 (51) 130 >3bqy_A Putative TETR family t 48.8 20 0.00059 16.9 6.7 41 26-67 11-52 (209) 131 >2g7g_A RHA04620, putative tra 48.6 20 0.00059 16.9 8.7 44 23-67 14-59 (213) 132 >1zk8_A Transcriptional regula 48.5 20 0.0006 16.9 9.6 108 26-146 17-125 (183) 133 >3g1l_A Transcriptional regula 48.3 20 0.0006 16.9 10.9 64 23-87 47-114 (256) 134 >3bhq_A Transcriptional regula 48.3 20 0.0006 16.8 11.3 59 26-85 21-80 (211) 135 >2g7l_A TETR-family transcript 48.1 16 0.00047 17.6 2.9 44 23-67 22-69 (243) 136 >3egq_A TETR family transcript 47.9 21 0.00061 16.8 4.6 46 24-70 8-57 (69) 137 >1s7o_A Hypothetical UPF0122 p 47.8 21 0.00061 16.8 4.0 47 21-68 23-70 (73) 138 >2ofy_A Putative XRE-family tr 47.4 21 0.00062 16.8 4.2 57 26-83 17-78 (86) 139 >2di3_A Bacterial regulatory p 46.7 21 0.00063 16.7 3.4 38 22-60 6-51 (78) 140 >1r1t_A Transcriptional repres 46.5 19 0.00056 17.1 3.0 34 26-60 4-38 (78) 141 >1ojl_A Transcriptional regula 46.5 20 0.00058 17.0 3.1 37 23-60 13-51 (51) 142 >2vke_A Tetracycline repressor 45.8 22 0.00066 16.6 4.3 43 27-70 13-56 (67) 143 >3by6_A Predicted transcriptio 45.4 22 0.00066 16.6 4.0 39 21-60 12-58 (106) 144 >1adr_A P22 C2 repressor; tran 45.1 23 0.00067 16.5 3.3 58 25-83 6-68 (76) 145 >1stz_A Heat-inducible transcr 45.1 23 0.00067 16.5 4.1 40 23-62 20-63 (105) 146 >3hyi_A Protein DUF199/WHIA; l 44.4 23 0.00069 16.5 4.3 54 14-68 33-87 (91) 147 >2iai_A Putative transcription 43.8 24 0.0007 16.4 8.6 48 25-73 8-56 (200) 148 >1zug_A Phage 434 CRO protein; 43.8 17 0.0005 17.4 2.5 51 31-82 11-64 (71) 149 >1b9m_A Protein (mode); DNA-bi 43.6 12 0.00035 18.4 1.7 40 21-62 20-59 (112) 150 >2ao9_A Phage protein; structu 43.3 17 0.00051 17.3 2.4 56 21-85 26-88 (90) 151 >2guh_A Putative TETR-family t 42.8 24 0.0007 16.4 3.1 46 24-70 43-92 (214) 152 >1y9q_A Transcriptional regula 42.3 16 0.00049 17.5 2.2 56 23-79 10-70 (76) 153 >3eus_A DNA-binding protein; s 41.4 25 0.00073 16.3 3.0 47 31-78 22-72 (86) 154 >2hxi_A Putative transcription 41.3 26 0.00077 16.1 5.5 45 23-68 32-80 (241) 155 >3col_A Putative transcription 41.1 26 0.00077 16.1 7.2 44 26-70 19-63 (196) 156 >1mus_A TN5 transposase; hairp 41.1 26 0.00077 16.1 3.5 60 18-77 10-88 (93) 157 >3cwr_A Transcriptional regula 41.1 26 0.00077 16.1 3.8 33 35-68 36-68 (208) 158 >3eet_A Putative GNTR-family t 40.4 27 0.00079 16.1 3.4 39 20-59 29-75 (96) 159 >2kpj_A SOS-response transcrip 40.4 27 0.00079 16.1 4.0 57 24-81 9-70 (94) 160 >1pjq_A CYSG, siroheme synthas 39.9 20 0.00059 16.9 2.3 44 45-88 20-63 (63) 161 >2zj8_A DNA helicase, putative 39.3 28 0.00082 15.9 4.3 48 26-74 82-129 (156) 162 >2o7t_A Transcriptional regula 39.2 28 0.00082 15.9 3.3 33 24-57 12-48 (50) 163 >3ivp_A Putative transposon-re 38.9 28 0.00083 15.9 4.3 57 22-79 10-71 (73) 164 >3crj_A Transcription regulato 38.5 29 0.00084 15.9 8.0 57 25-85 22-79 (199) 165 >3e7l_A Transcriptional regula 37.9 29 0.00086 15.8 3.4 32 29-61 24-56 (63) 166 >1vz0_A PARB, chromosome parti 37.3 30 0.00088 15.7 3.8 35 24-59 23-57 (59) 167 >1rp3_A RNA polymerase sigma f 37.2 30 0.00088 15.7 4.4 61 24-85 14-74 (150) 168 >1fp1_D Isoliquiritigenin 2'-O 35.7 31 0.00093 15.6 3.0 56 25-86 22-78 (82) 169 >3fiw_A Putative TETR-family t 34.9 14 0.00041 18.0 0.9 44 23-67 28-75 (88) 170 >1r69_A Repressor protein CI; 34.9 30 0.0009 15.7 2.6 50 32-82 10-62 (69) 171 >1bl0_A Protein (multiple anti 34.0 33 0.00099 15.4 3.1 39 23-61 9-48 (76) 172 >2vpr_A Tetracycline resistanc 33.6 27 0.0008 16.0 2.2 42 28-70 15-57 (68) 173 >2ijl_A AGR_C_4647P, molybdenu 31.3 33 0.00097 15.5 2.3 34 26-60 28-61 (135) 174 >2k9s_A Arabinose operon regul 31.0 37 0.0011 15.1 3.4 38 23-60 9-47 (61) 175 >1y7y_A C.AHDI; helix-turn-hel 30.9 37 0.0011 15.1 3.3 38 23-61 12-50 (74) 176 >2obp_A Putative DNA-binding p 30.2 28 0.00083 15.9 1.8 22 37-59 37-58 (96) 177 >2wiu_B HTH-type transcription 29.9 38 0.0011 15.0 2.4 61 19-80 7-72 (88) 178 >1e0g_A Membrane-bound lytic m 29.5 22 0.00065 16.6 1.2 26 33-59 7-32 (48) 179 >1d5y_A ROB transcription fact 28.9 40 0.0012 14.8 2.4 81 24-108 7-88 (104) 180 >2vxz_A Pyrsv_GP04; viral prot 28.9 40 0.0012 14.8 3.0 37 23-60 10-47 (165) 181 >3i3n_A Kelch-like protein 11; 28.6 33 0.00097 15.5 1.9 36 37-72 9-50 (57) 182 >2ppx_A AGR_C_3184P, uncharact 28.5 38 0.0011 15.1 2.2 29 30-59 37-65 (68) 183 >2q1z_A RPOE, ECF SIGE; ECF si 28.4 28 0.00083 15.9 1.5 39 22-61 35-73 (82) 184 >2g7s_A Transcriptional regula 28.3 41 0.0012 14.8 2.8 29 28-57 19-48 (50) 185 >2nut_A Protein transport prot 28.0 27 0.00081 16.0 1.4 58 52-122 53-117 (126) 186 >2qib_A TETR-family transcript 27.5 43 0.0013 14.7 7.4 44 24-68 17-64 (213) 187 >2o8x_A Probable RNA polymeras 26.8 44 0.0013 14.6 3.8 40 21-61 16-55 (70) 188 >1v6t_A Hypothetical UPF0271 p 26.6 44 0.0013 14.6 6.5 50 21-74 79-134 (255) 189 >3frw_A Putative Trp repressor 26.5 45 0.0013 14.6 2.7 29 28-57 27-55 (84) 190 >2dfa_A Hypothetical UPF0271 p 26.0 45 0.0013 14.5 6.5 55 15-74 74-134 (250) 191 >3fbl_A Putative uncharacteriz 25.6 46 0.0014 14.5 3.3 45 38-83 7-53 (82) 192 >2o3f_A Putative HTH-type tran 25.5 46 0.0014 14.5 4.4 60 22-82 23-89 (111) 193 >2a6c_A Helix-turn-helix motif 25.3 47 0.0014 14.4 2.2 51 24-75 18-74 (83) 194 >1uly_A Hypothetical protein P 25.3 47 0.0014 14.4 3.1 38 22-60 9-47 (74) 195 >3edp_A LIN2111 protein; APC88 25.0 47 0.0014 14.4 4.6 39 21-60 10-56 (76) 196 >1m2o_A SEC23, protein transpo 24.2 27 0.00079 16.1 0.8 57 52-121 42-105 (108) 197 >3hot_A Transposable element m 24.2 49 0.0015 14.3 4.6 37 24-60 10-52 (65) 198 >2wv0_A YVOA, HTH-type transcr 24.2 49 0.0015 14.3 3.4 38 21-59 11-56 (82) 199 >2qsb_A UPF0147 protein TA0600 24.1 48 0.0014 14.3 2.1 11 39-49 19-29 (89) 200 >2pn6_A ST1022, 150AA long hyp 24.1 49 0.0015 14.3 3.0 36 24-60 3-40 (53) 201 >2p5t_A Putative transcription 23.9 50 0.0015 14.3 4.7 49 32-81 10-62 (158) 202 >2djp_A Hypothetical protein S 23.6 41 0.0012 14.8 1.7 26 33-59 20-45 (77) 203 >1zg3_A Isoflavanone 4'-O-meth 23.3 51 0.0015 14.2 2.9 52 30-85 27-80 (85) 204 >1qpz_A PURA, protein (purine 23.3 51 0.0015 14.2 4.2 33 38-71 2-38 (45) 205 >2v79_A DNA replication protei 23.2 51 0.0015 14.2 4.3 36 24-60 21-59 (120) 206 >3lhq_A Acrab operon repressor 23.1 51 0.0015 14.1 13.3 57 26-83 23-80 (220) 207 >2nrk_A Hypothetical protein G 22.6 53 0.0016 14.1 3.5 32 52-83 118-149 (173) 208 >2ewt_A BLDD, putative DNA-bin 22.5 53 0.0016 14.1 4.6 48 22-69 6-57 (71) 209 >2qzg_A Conserved uncharacteri 22.4 52 0.0015 14.1 2.0 28 23-58 13-40 (94) 210 >3f6v_A Possible transcription 22.1 54 0.0016 14.0 3.7 37 23-60 57-94 (131) 211 >2hsg_A Glucose-resistance amy 22.0 54 0.0016 14.0 3.1 33 38-71 4-40 (46) 212 >1ddz_A Carbonic anhydrase; al 21.5 33 0.00097 15.5 0.8 34 16-49 36-80 (242) 213 >1tty_A Sigma-A, RNA polymeras 21.3 56 0.0017 13.9 3.8 39 22-61 20-62 (87) 214 >2a6h_F RNA polymerase sigma f 21.1 56 0.0017 13.9 2.7 27 34-61 43-69 (88) 215 >2do9_A NALP10, nacht-, LRR- a 21.1 56 0.0017 13.9 3.0 36 113-148 62-97 (115) 216 >1j5y_A Transcriptional regula 21.0 57 0.0017 13.9 3.2 38 22-60 19-59 (79) 217 >1r1u_A CZRA, repressor protei 20.8 57 0.0017 13.9 2.4 38 22-60 24-62 (106) 218 >1r71_A Transcriptional repres 20.8 57 0.0017 13.8 3.9 35 24-59 40-74 (76) 219 >2kko_A Possible transcription 20.3 58 0.0017 13.8 2.7 34 26-60 27-61 (82) 220 >2oi8_A Putative regulatory pr 20.1 59 0.0017 13.8 3.5 34 23-57 19-56 (58) 221 >2gu1_A Zinc peptidase; alpha/ 20.0 59 0.0018 13.7 2.0 29 33-62 12-40 (95) No 1 >>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:) Probab=99.85 E-value=5.3e-21 Score=161.13 Aligned_cols=126 Identities=28% Similarity=0.490 Sum_probs=106.9 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55540246567644589999999999858923899961588988889999983398999999999997379999998620 Q gi|254781188|r 7 KAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185) Q Consensus 7 ~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185) +..|.||+. +|+++++++||..+++|.|++.||...|||+++||++|+.++++|+++|.+|++.+.+.+++.+++. T Consensus 6 ~~~k~gRps----ky~~e~~~~i~~~~~~G~s~~~Ia~~~gips~~Tl~~W~~~~~ef~e~~~~ak~~~~~~v~~~l~~~ 81 (143) T 3hef_A 6 TEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFEI 81 (143) T ss_dssp -------CC----SCCHHHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCC----CCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999997----6899999999999987987999987279996899999998178999999999999999999999999 Q ss_pred -CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH Q ss_conf -02300564036037899799998899999876466534342034433------13467889 Q gi|254781188|r 87 -PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKH------TIDLRPAI 141 (185) Q Consensus 87 -~a~~~ee~~~~~~~~~lr~~~~~~~~w~l~k~~p~~yg~rvs~e~~h------~~~~~~~~ 141 (185) ...+.++.- +...++++.+++ |.|.++.|.+||+++++|++. ++.++|+. T Consensus 82 A~~~~~~~~~--~~~~~~~~~A~~---f~L~~~~p~~y~dk~~~e~tg~~g~~i~~~~~~~~ 138 (143) T 3hef_A 82 ADNAIPDAAE--VAKARLRVDTRK---WALARMNPRKYGDKVTNELVGKDGGAIQIETSPMS 138 (143) T ss_dssp HHTCCSSHHH--HHHHHHHHHHHH---HHHHHHSHHHHSCCEEEEEECGGGSCCCEEEC--- T ss_pred HHCCCCCHHH--HHHHHHHHHHHH---HHHHCCCHHHCCCCCCCCCCCCCCCCEEEEECCCH T ss_conf 9601135278--877778888999---99972681313654320035789986588732405 No 2 >>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:) Probab=97.16 E-value=0.00032 Score=48.99 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=41.5 Q ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH Q ss_conf 676445899999999998589238999615889888899999833989 Q gi|254781188|r 16 KGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185) Q Consensus 16 k~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185) +....|++|+-.+|..++-.|.|+..||++.|++ -+|||+|++.+.+ T Consensus 18 ~~rr~yt~efK~~av~~~~~G~sv~eva~~~gIs-~stl~~W~k~~~~ 64 (87) T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDGESKASVARDIGVP-ESTLRGWCKNEDK 64 (87) T ss_dssp SCCSSCCHHHHHHHHHHHHHTCCHHHHHHHHTCC-HHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHHH T ss_conf 8887089999999999987269999999997969-9999999999998 No 3 >>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:) Probab=96.98 E-value=0.00077 Score=46.42 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=41.2 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 246567644589999999999858923899961588988889999983398 Q gi|254781188|r 12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) ||.++ +|++-+..+...+++|+|+..||+..|+ |.+|||+|+.... T Consensus 1 GRp~k----lt~eq~~~a~~l~~~G~s~~~iA~~~gV-Sr~TiYr~l~~~~ 46 (52) T 1jko_C 1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS 46 (52) T ss_dssp CCCCS----SCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC T ss_pred CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCHH T ss_conf 98986----9999999999999879989999999897-9999999845214 No 4 >>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=95.48 E-value=0.021 Score=36.75 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=37.4 Q ss_pred CCCCCCHHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 76445899999999998589-238999615889888899999833 Q gi|254781188|r 17 GCIYYSPELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 17 ~~i~Ys~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ..-.|++|.+..-++.|-+| +|+++.++..|+| ++|++.||+. T Consensus 10 ~~~~yt~e~l~~Ai~aV~~g~mS~~~As~~y~IP-~sTL~~ri~g 53 (70) T 2cob_A 10 RYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIP-HSTLEYKVKE 53 (70) T ss_dssp CSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCC-HHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCEEEHHCCCCCCCC-CCHHHHHHHH T ss_conf 3233688899999999983541222037530576-5011122776 No 5 >>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67) Probab=95.46 E-value=0.036 Score=35.25 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=47.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 56764458999999999985892--38999615889888899999833989999999999 Q gi|254781188|r 15 KKGCIYYSPELFAGILDQVANGK--ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185) Q Consensus 15 Kk~~i~Ys~Eiad~Ic~rIA~Ge--SLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185) |+-...+|-+-=-+||.++-+|+ |-.+|++..|+| .+||..|++.-+++...+..+- T Consensus 2 Krkr~~ltl~eK~~ii~~~e~g~~~s~~~iAr~~gi~-~STis~IlK~k~~i~~~~~~~~ 60 (67) T 1hlv_A 2 GPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIP-PSTLSTILKNKRAILASERKYG 60 (67) T ss_dssp CCSSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCC-HHHHHHHHHTHHHHHHHHHHHG T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9521301278774899998739751100677750898-4889999960488876654540 No 6 >>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56) Probab=95.26 E-value=0.021 Score=36.75 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=37.1 Q ss_pred CCCHHHHHHHHHHHHC--CHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 4589999999999858--92389996158898888999998339 Q gi|254781188|r 20 YYSPELFAGILDQVAN--GKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 20 ~Ys~Eiad~Ic~rIA~--GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .|++|+=.++.....+ |.|+..|+++.|+ +.+||++|++.. T Consensus 5 ~ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi-~~~tl~~Wvk~~ 47 (56) T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDLGI-NRVTLKNWIIKY 47 (56) T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCHHHHHHHHH T ss_conf 8999999999999998389839999999699-821303999997 No 7 >>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69) Probab=94.74 E-value=0.033 Score=35.46 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=38.4 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 589999999999858923899961588988889999983398 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) |+-++-..|++.+.+|.|.+++++..++ |.+|+++|++... T Consensus 2 yS~DlR~riv~~~~~G~s~~~aA~~f~V-S~~tv~k~~~r~~ 42 (53) T 1pdn_C 2 LPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQ 42 (53) T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH T ss_conf 9899999999999869999999998896-8999999999987 No 8 >>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:) Probab=94.25 E-value=0.044 Score=34.66 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=37.2 Q ss_pred CCCCCHHHHHHHHHHHH--------CCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 64458999999999985--------8923899961588988889999983398 Q gi|254781188|r 18 CIYYSPELFAGILDQVA--------NGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 18 ~i~Ys~Eiad~Ic~rIA--------~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) +..|++|+=.++...+- .|.|++.||...|+ +.+|+++|++... T Consensus 4 ~r~ys~efK~~aV~l~~e~~~~~~~~g~sv~~vA~~lgi-s~~~l~~W~k~~~ 55 (108) T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGC-TPETLRVWVRQHE 55 (108) T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTS-CHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC-CHHHHHHHHHHHC T ss_conf 999999999999999998622346666539999753577-9899615998730 No 9 >>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75) Probab=92.05 E-value=0.099 Score=32.30 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=38.7 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 589999999999858923899961588988889999983398 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) |+.++-..|++.+..|.|.++|++..++ +.+|+.+|++... T Consensus 26 lS~DLR~rIV~~~~~G~s~r~iArrf~V-S~stv~kwl~R~r 66 (75) T 2k27_A 26 LPEVVRQRIVDLAHQGVRPCDISRQLRV-SHGCVSKILGRYY 66 (75) T ss_dssp SCHHHHHHHHHHHHHTCCHHHHHHHHTC-CSHHHHHHHCCSS T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH T ss_conf 9899999999999759989999988776-5989999999986 No 10 >>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} (A:) Probab=91.31 E-value=1.1 Score=25.32 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999999858923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +.+-.+|..-+-|-|++.||+.-|+ +.+|||++..+.+++-....+....+.....++.+....+..+-.. T Consensus 27 ~aA~~l~~~~G~~~si~~IA~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (215) T 2hku_A 27 TAATELFLEHGEGVPITQICAAAGA-HPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGDYTE 97 (215) T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHTC-CHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 9999999985867859999998652-2141111435399999999999999999998750377789999999 No 11 >>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:) Probab=89.96 E-value=0.78 Score=26.32 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=50.2 Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 74245554024656764458999999999985-89238999615889888899999833989999999999973799999 Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laE 81 (185) ||+++.++.-+..+ =-+.+.+++..-+ +|-|++.||+.-|+ +.+|||....+.+++-.........+.....+ T Consensus 1 gm~r~~~~~~~r~~-----Il~aa~~l~~~~G~~~~si~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~ 74 (194) T 2nx4_A 1 GVPKLVDHDERRRS-----ITAAAWRLIAARGIEAANMRDIATEAGY-TNGALSHYFAGKDEILRTSYEHISEATDRRIA 74 (194) T ss_dssp CCCHHHHHHHHHHH-----HHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 94899998999999-----9999999999759250659999999790-99888530799999999999987999999998 Q ss_pred HHHH Q ss_conf 9862 Q gi|254781188|r 82 ELLE 85 (185) Q Consensus 82 EILE 85 (185) .+++ T Consensus 75 ~~~~ 78 (194) T 2nx4_A 75 EALG 78 (194) T ss_dssp HHHT T ss_pred HHHC T ss_conf 8623 No 12 >>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A (A:) Probab=89.61 E-value=0.89 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999999985--8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 23 PELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 23 ~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) ..+.+.-...++ .+-|++.||+.-|+ +.+|||+...+.+++-.........+.....++++....+..+.+. T Consensus 17 ~~Il~aa~~l~~~~G~~ti~~Ia~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (190) T 2v57_A 17 RAILDAAMLVLADHPTAALGDIAAAAGV-GRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAALR 90 (190) T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 9999999999988699749999998784-9888977709999999999999999999999987636999999999 No 13 >>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:) Probab=88.10 E-value=1.6 Score=24.28 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=42.2 Q ss_pred HHHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 99999999998---5-892389996158898888999998339899999999999737999999862002300 Q gi|254781188|r 23 PELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTA 91 (185) Q Consensus 23 ~Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ 91 (185) ..+.+.-...+ + +|-|++.||+.-|+ +.+|||++..+.+++-....+-...+.....++.+....+.. T Consensus 38 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221) T 3g7r_A 38 ARLLGTATRIFYAEGIHSVGIDRITAEAQV-TRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAAD 109 (221) T ss_dssp HHHHHHHHHHHHHHCSTTSCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999999999999849150749999998789-968411068999999999999999999999999872598412 No 14 >>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209) Probab=87.66 E-value=0.52 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.470 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) -+.+.|.+-|..|.|+.+|.+..|+ +..|||+-=++ T Consensus 13 ~iY~rVv~mL~~G~~is~IAk~~gi-sRqTVYRIK~d 48 (59) T 2r0q_C 13 VIYHRVVEMLEEGQAISKIAKEVNI-TRQTVYRIKHD 48 (59) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999999877999999999896-99999999997 No 15 >>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:) Probab=86.61 E-value=1.9 Score=23.68 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=44.7 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 9999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) .++..-+ +|-|++.||+.-|+ |.+|||++..+.+++-.........+.....++.++.+.+..+... T Consensus 15 ~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (185) T 2yve_A 15 DYIGEYSLETLSYDSLAEATGL-SKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPLERLR 82 (185) T ss_dssp HHHHHSCSTTCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSSTTSHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 9999859251789999998683-7402258799999999999999999999999998728999999999 No 16 >>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} (A:) Probab=86.45 E-value=2.7 Score=22.70 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +.+..++..-+-|-|++.||+.-|+ +.+|||.+..+.+++-....+.........++..++ T Consensus 20 ~aa~~l~~~~G~~~t~~~Ia~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (196) T 2qwt_A 20 EVAYDTFAAEGLGVPMDEIARRAGV-GAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLA 80 (196) T ss_dssp HHHHHHHHHTCTTSCHHHHHHHTTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999987967879999999596-999999880899999999999999999999988722 No 17 >>2ezh_A Transposase; DNA-binding protein, transposition; NMR {Enterobacteria phage MU} (A:) Probab=86.10 E-value=1.3 Score=24.73 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=33.5 Q ss_pred CCCCCCCCHHHHHHHHHHHH--CCHHH-------HHHHHCCC--CCCHHHHHHHHHCCHH Q ss_conf 56764458999999999985--89238-------99961588--9888899999833989 Q gi|254781188|r 15 KKGCIYYSPELFAGILDQVA--NGKAL-------GHVLRKVG--MPKYSTFYRWIKKDLK 63 (185) Q Consensus 15 Kk~~i~Ys~Eiad~Ic~rIA--~GeSL-------r~ICkd~g--MPs~sTV~rWL~kdeE 63 (185) ++|....++++++-|-+..- ..-|+ ...|+..| .||+.||++||+.-+. T Consensus 2 ~kg~~~l~~~v~~~I~~~yL~~~~ps~~~~~~~i~~~c~~~gl~~PS~~Tv~rri~~i~~ 61 (75) T 2ezh_A 2 NVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDE 61 (75) T ss_dssp ----CCCCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHCH T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH T ss_conf 710421999999999999827348989999999999999819899999999999994899 No 18 >>2pbx_A Hemagglutinin/protease regulatory protein; quorum sensing, transcription factor, TETR family, DNA-binding, transcription regulation; 2.20A {Vibrio cholerae 2740-80} (A:) Probab=85.37 E-value=3 Score=22.36 Aligned_cols=66 Identities=5% Similarity=0.091 Sum_probs=40.9 Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) ++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+.....+.++....+..+... T Consensus 29 l~~~~G~~~~ti~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (203) T 2pbx_A 29 VFAKRGIGRGGHADIAEIAQV-SVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQ 95 (203) T ss_dssp HHHHHCTTCCCHHHHHHHHTS-CHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 998719240779999988399-8542232689879999999999999999999999852699999999 No 19 >>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:) Probab=85.00 E-value=1 Score=25.57 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.8 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 999999985-892389996158898888999998339899999999999 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ 73 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are 73 (185) +-.+|..-+ +|-|++.||+.-|+ +.+|||+...+.+++-........ T Consensus 21 a~~l~~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~~~ 68 (200) T 2hyj_A 21 AAEIASEEGLDGITIGRLAEELEM-SKSGVHKHFGTKETLQISTLDKAF 68 (200) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHTTCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999739441679999998783-801276565899999999999998 No 20 >>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} (A:) Probab=84.88 E-value=1.5 Score=24.44 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=39.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 9999999998589238999615889888899999833989999999999973 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~q 75 (185) +.+.++|.+-+-|-|++.||+.-|+ +.+|||++..+.+++-....+....+ T Consensus 16 ~aA~~l~~~~G~~~t~~~IA~~agv-s~~tiY~~F~sKe~L~~a~~~~~~~~ 66 (190) T 3jsj_A 16 EAAAALTYRDGVGIGVEALCKAAGV-SKRSXYQLFESKDELLAASLKERSAA 66 (190) T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTC-CHHHHHHHCSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHH T ss_conf 9999999986967859999999789-82300121899999999999999999 No 21 >>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} (A:1-82) Probab=84.49 E-value=2.9 Score=22.49 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998589238999615889888899999833989999999999973799999 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laE 81 (185) +.+-++|..-+-|-|++.||+.-|+ +.+|||....+.+++-..+..-...+.....+ T Consensus 23 ~aa~~l~~~~G~~~t~~~ia~~agv-s~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~ 79 (82) T 2rek_A 23 EAAAAEVARHGADASLEEIARRAGV-GSATLHRHFPSRWGLLQAVFQERVAQLCDEAR 79 (82) T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999987978879999999694-99899988599899999999999999999999 No 22 >>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:) Probab=84.03 E-value=3.2 Score=22.21 Aligned_cols=71 Identities=10% Similarity=0.207 Sum_probs=45.7 Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 99999999985-89238999615889888899999833989-99999999997379999998620023005640 Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeE-freqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +-+-.+|..-+ +|-|++.||+.-|+ +.+|||.+..+.++ +.+-..+......+.+.+.+.....+..+... T Consensus 13 ~aA~~l~~~~G~~~~si~~Ia~~agv-s~~tiY~yF~sK~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (191) T 1sgm_A 13 HTASRLSQLQGYHATGLNQIVKESGA-PKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQ 85 (191) T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHCC-CSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999839030669999998790-98899888599088899999999988899999876512302578999 No 23 >>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:) Probab=83.78 E-value=1.6 Score=24.21 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999985----892389996158898888999998339899999999999737999999862 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) ..+.+.-.+.++ +|-|++.||+.-|+ +.+|||++..+.+++-....+....+.....++.+. T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 78 (201) T 3iuv_A 13 QRIIDAAIRVVGQKGIAGLSHRTVAAEADV-PLGSTTYHFATLDDLXVAALRQANEGFARVVAAHPA 78 (201) T ss_dssp HHHHHHHHHHHHTTCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHTTCGG T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999849030679999999785-861798883899999999999999999999997651 No 24 >>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:) Probab=83.39 E-value=3.7 Score=21.80 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=48.5 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 9999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) .+.++|..-+ .|-|++.||+.-|+ +.+|||......+++-.........+.....+++++...+..+.+. T Consensus 22 aa~~lf~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (212) T 3knw_A 22 SGFHLVLRKGFVGVGLQEILKTSGV-PKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLX 92 (212) T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 9999998709552889999999790-9999988858999999999999999999999999843799899999 No 25 >>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} (A:) Probab=82.64 E-value=3.9 Score=21.61 Aligned_cols=61 Identities=8% Similarity=-0.047 Sum_probs=42.6 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +.+..+|..-+-.-|++.||+.-|+ |.+|||+...+.+++-.....-...+.....++.++ T Consensus 19 ~aA~~lf~~~G~~~T~~~IA~~aGv-s~~tiY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~ 79 (224) T 1t33_A 19 AAALAQFGEYGLHATTRDIAALAGQ-NIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAE 79 (224) T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHTS-CHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999987907569999998389-924215788999999999999999999999999998 No 26 >>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82) Probab=82.39 E-value=2.8 Score=22.61 Aligned_cols=58 Identities=7% Similarity=-0.011 Sum_probs=39.3 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-89238999615889888899999833989999999999973799999986 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELL 84 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEIL 84 (185) +.+++..-+ +|-|++.||+.-|| +.+|||....+-+++-..+..-...+....+++.+ T Consensus 21 a~~l~~~~G~~~~ti~~ia~~agv-s~~t~Y~~F~~k~~Ll~~~~~~~~~~~~~~l~~~~ 79 (82) T 1rkt_A 21 AKTVFKRKGFELTTXKDVVEESGF-SRGGVYLYFSSTEEXFRRIIETGLDEGLRKLDKSA 79 (82) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999819240889999998589-96521016899999999999999999999999875 No 27 >>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} (A:) Probab=82.06 E-value=4.1 Score=21.47 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=42.3 Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999985----8923899961588988889999983398999999999997379999998620 Q gi|254781188|r 25 LFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185) Q Consensus 25 iad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185) +.+.-...++ .|-|++.||+.-|+ +.+|||+...+.+++-.........+.....+.+++. T Consensus 29 Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~tlY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~ 93 (216) T 1t56_A 29 ILATAENLLEDRPLADISVDDLAKGAGI-SRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEN 93 (216) T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999709440779999999685-8666603589878999999999999999999998735 No 28 >>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} (A:) Probab=82.06 E-value=1.2 Score=25.04 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=38.7 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) ..+|..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-.........+......+.++ T Consensus 24 ~~l~~~~G~~~~si~~Ia~~agv-s~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 82 (215) T 3e7q_A 24 LACLKRHGFQGASVRKICAEAGV-SVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAID 82 (215) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999739340779999999794-888898885999999999999999999999988763 No 29 >>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} (A:1-77) Probab=81.49 E-value=3.9 Score=21.62 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=41.8 Q ss_pred HHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985892389996158898888999998339899999999999737999999862 Q gi|254781188|r 30 LDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 30 c~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) ...=-.|-|++.||+.-|++ .+|||++....+++-.....-...+.....+++++ T Consensus 19 ~~~G~~~~ti~~ia~~agvs-~~~~Y~~F~ske~l~~~~~~~~~~~~~~~~~~~~~ 73 (77) T 2id6_A 19 GKKGYDRATTDEIAEKAGVA-KGLIFHYFKNKEELYYQAYXSVTEKLQKEFENFLX 73 (77) T ss_dssp HHHHHHHCCHHHHHHHHTCC-THHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHHHHCCC-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87291406799999987909-99995118989999999999999988999999874 No 30 >>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} (A:) Probab=81.41 E-value=4.4 Score=21.31 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=44.1 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 9999999998---5-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) .+.+.-+..+ + +|-|++.||+.-|+ |.+|||++..+.+++-.....-...+.....++.++...+..+... T Consensus 13 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (193) T 2dg8_A 13 RILAATLDLIAEEGIARVSHRRIAQRAGV-PLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEARE 87 (193) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999729040679999999890-9999976638999999999999999999999887334899899999 No 31 >>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} (A:) Probab=80.91 E-value=3 Score=22.40 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=43.7 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +.+++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+..-.+...++...+..+... T Consensus 12 a~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (189) T 3geu_A 12 AITLFSEKGYDGTTLDDIAKSVNI-KKASLYYHFDSKKSIYEQSVKCCFDYLNNIIXXNQNKSNYSIDALY 81 (189) T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTC-CHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999749363769999998790-9768877779999999999999999999999987606899999999 No 32 >>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} (A:) Probab=80.83 E-value=1.9 Score=23.78 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=39.6 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +-.+|..-+ +|-|++.||+.-|+ +.+|||+...+.+++-.........+.....+..+. T Consensus 20 a~~l~~~~G~~~~t~~~IA~~agv-s~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 79 (219) T 2w53_A 20 AEACFHEHGVARTTLEMIGARAGY-TRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTST 79 (219) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999859240879999998688-844087638999999998999999999999998740 No 33 >>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} (A:) Probab=80.23 E-value=2.4 Score=23.07 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=44.9 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 9999999985-89238999615889888899999833989999999999973799999986200230056 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEE 93 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee 93 (185) .+..++..-+ +|-|++.||+.-|+ +.+|||+...+.+++-.........+.....++.+....+..+. T Consensus 11 aA~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) T 2g3b_A 11 ASATAIAQRGIRGLRVNDVAEVAGV-SPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGDSARDR 79 (208) T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTS-CHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC-CCSHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 9999999759241629999999890-99999401899999999999999889999998764258978999 No 34 >>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75) Probab=79.98 E-value=1.9 Score=23.72 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.4 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 99999858923899961588988889999983398999999999997379 Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77 (185) Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD 77 (185) .|...=-+|-|++.||+.-|+ +.+|||....+.+++-..+......+.. T Consensus 19 l~~~~G~~~~t~~~Ia~~agv-s~~~~y~~F~~K~~l~~~~~~~~~~~~~ 67 (75) T 2fd5_A 19 ALLERGAVEPSVGEVMGAAGL-TVGGFYAHFQSKDALMLEAFEQLLGKRR 67 (75) T ss_dssp HHHHHTTTSCCHHHHHHHTTC-CGGGGGGTCSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 999719451689999987389-9426979819899999999999999999 No 35 >>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} (A:) Probab=79.53 E-value=5 Score=20.91 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=37.9 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) +.+++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+.....+.+ T Consensus 27 A~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~ 84 (212) T 1pb6_A 27 ALDTFSQFGFHGTRLEQIAELAGV-SKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAF 84 (212) T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999859151889999999794-9888978778999999987899999999999975 No 36 >>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A (A:) Probab=78.94 E-value=5.2 Score=20.79 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=47.0 Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999-98589238999615889888899999833----9899999999999737999999862 Q gi|254781188|r 24 ELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185) .+...|-. +...|.|...+++.-|+ +.+|+.+|.+- ..+.-.+++++.....+.|++...+ T Consensus 28 ~i~~~lk~~r~~~gltq~elA~~~gi-s~~~i~~~e~G~~~~s~~~l~~ia~~l~v~~~~l~~~~~~ 93 (99) T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNL-DRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 93 (99) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999849999999965677-4238999974234475999999999959999999814389 No 37 >>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80) Probab=78.52 E-value=1.5 Score=24.49 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=31.7 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999985-89238999615889888899999833989999999999 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185) .++..-+ ++-|++.||+.-|+ +.+|||+...+.+++-.....-. T Consensus 22 ~l~~~~G~~~~t~~~Ia~~~gv-s~~~~Y~~F~~K~~L~~~~~~~~ 66 (80) T 3b81_A 22 DIFIANGYENTTLAFIINKLGI-SKGALYHYFSSKEECADAAIENR 66 (80) T ss_dssp HHHHHHCSTTCCHHHHHHHHTC-CHHHHHTTCSSHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999749040789999999598-98899871699999999999999 No 38 >>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:) Probab=78.42 E-value=5.4 Score=20.69 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=39.7 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998---5-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+.+.-.+.+ + +|-|++.||+.-|+ +.+|||++..+.+++-.........+.....++.+. T Consensus 27 ~Il~aA~~l~~~~G~~~~si~~IA~~agv-s~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~ 91 (231) T 2zcx_A 27 AILDAARELGTERGIREITLTDIAATVGM-HKSALLRYFETREQIFLKITAEGWKEWSAELCARLR 91 (231) T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999709540779999999695-989997887999999999999999999999999874 No 39 >>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:) Probab=78.36 E-value=5.4 Score=20.68 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=41.1 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 9999985-892389996158898888999998339899999999999737999999862002300564 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEEL 94 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~ 94 (185) .++..-+ +|-|++.||+.-|+ +.+|||+...+.+++-.........+........+....+..+.. T Consensus 19 ~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (206) T 1vi0_A 19 EVIAENGYHQSQVSKIAKQAGV-ADGTIYLYFKNKEDILISLFKEKXGQFIERXEEDIKEKATAKEKL 85 (206) T ss_dssp HHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 9999839340779999999598-875798608987999999999887799998887641220126899 No 40 >>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} (A:) Probab=77.81 E-value=5.6 Score=20.57 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=45.2 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +..+|..-+ .|-|++.||+.-|+ +.+|||+...+.+++-.........+.....+++++...+..+.+. T Consensus 23 a~~l~~~~G~~~~t~~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (203) T 3f1b_A 23 AVDVFSDRGFHETSXDAIAAKAEI-SKPXLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLR 92 (203) T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999729341779999999890-9889978829999999999999999999999886345899899999 No 41 >>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A (A:) Probab=77.56 E-value=5.7 Score=20.53 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=51.7 Q ss_pred CCHHHHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 589999999999-8589238999615889888899999833----989999999999973799999986200230 Q gi|254781188|r 21 YSPELFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLEEPAPT 90 (185) Q Consensus 21 Ys~Eiad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE~~a~~ 90 (185) +...+...|-.. ...|.|...+++.-|+ +.+|+.+|.+. ..+.-.+++++...-.+.|+..-.+..... T Consensus 25 ~~~~ig~~l~~~R~~~g~tq~elA~~~gi-s~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~~~ 98 (117) T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEASRV-SPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMALQ 98 (117) T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHCCC T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHH T ss_conf 99999999999999959899999988603-077899997530327699999999998988999976033100035 No 42 >>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:149-195) Probab=77.43 E-value=2.1 Score=23.50 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=30.3 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999998589238999615889888899999833 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) --+||..++.|.|.+.|+..-++ |..||...+.. T Consensus 6 E~~vl~~l~~G~s~~eIA~~L~i-S~~TV~~~~~~ 39 (47) T 3c3w_A 6 ERTLLGLLSEGLTNKQIADRMFL-AEKTVKNYVSR 39 (47) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 99999999957999999999788-78899999999 No 43 >>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} (A:) Probab=77.20 E-value=1.6 Score=24.26 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=33.3 Q ss_pred HHHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999998---5-89238999615889888899999833989999999 Q gi|254781188|r 23 PELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185) Q Consensus 23 ~Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185) ..+.+.-...+ + +|-|++.||+.-|+ +.+|||++..+.+++-.... T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~~F~sK~~L~~~~~ 69 (207) T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGI-ARRTLFRYFPSKNAIPWGDF 69 (207) T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTS-CHHHHHHHCSSTTTGGGCSH T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH T ss_conf 999999999999729541789999988398-99999775688899999999 No 44 >>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:) Probab=77.00 E-value=5.9 Score=20.42 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=48.4 Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 99999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +.+..+|..-+ .|-|++.||+.-|+ +.+|||....+.+++-....+....+..-..+.+++...+..+.+. T Consensus 16 ~aa~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (215) T 1ui5_A 16 GAAADLFDRRGYESTTLSEIVAHAGV-TKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALX 87 (215) T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999849452889999998688-9450865199999999988999999999999976246899999999 No 45 >>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} (A:1-68) Probab=76.80 E-value=3 Score=22.41 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=32.7 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 9999999998---5-8923899961588988889999983398999999 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) .+.+.-+..| + ++-|++.||+.-|| +.+|||.+..+.+++-... T Consensus 15 ~Il~aa~~l~~~~G~~~~ti~~Ia~~~gv-s~~~~Y~~F~sK~~L~~~~ 62 (68) T 2i10_A 15 VALQTAXELFWRQGYEGTSITDLTKALGI-NPPSLYAAFGSKRDLFEKT 62 (68) T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH T ss_conf 99999999999869151889999998587-8556886159999999999 No 46 >>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:) Probab=76.56 E-value=6.1 Score=20.35 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=37.4 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985-89238999615889888899999833989999999999973799999986 Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELL 84 (185) Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEIL 84 (185) ..++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+....++..+ T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~ 76 (209) T 2gfn_A 19 LALIAREGISAVTTRAVAEESGW-STGVLNHYFGSRHELLLAALRRAGDIQGDRYRTIL 76 (209) T ss_dssp HHHHHHHCGGGCCHHHHHHHHSS-CHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999839230779999999691-99999542599999999999999999999999887 No 47 >>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} (A:) Probab=76.40 E-value=6.1 Score=20.32 Aligned_cols=80 Identities=6% Similarity=-0.002 Sum_probs=48.4 Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 4245554024656764458999999999985----892389996158898888999998339899999999999737999 Q gi|254781188|r 4 LVKKAKKAVRAKKGCIYYSPELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79 (185) Q Consensus 4 ~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~l 79 (185) .+..+++..|..+... --..+.+.-...++ .|-|++.||+.-|+ +.+|||....+.+++-....+....+.... T Consensus 2 ~~~~~~~~~~~~~~~~-~r~~Il~aA~~l~~~~G~~~~si~~IA~~aGv-s~~tlY~yF~sKe~L~~~~~~~~~~~~~~~ 79 (218) T 3gzi_A 2 XAEAKSRVGRPSGDTQ-NRDKLILAARNLFIERPYAQVSIREIASLAGT-DPGLIRYYFGSKEKLFSTXIHETAXPVLAQ 79 (218) T ss_dssp -------CCCCCHHHH-HHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTS-CTHHHHHHHSSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7999999999998368-99999999999999839230579999998688-964044159999999998899999999999 Q ss_pred HHHHHH Q ss_conf 999862 Q gi|254781188|r 80 AEELLE 85 (185) Q Consensus 80 aEEILE 85 (185) +++.++ T Consensus 80 ~~~~~~ 85 (218) T 3gzi_A 80 LHKARR 85 (218) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999873 No 48 >>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} (A:) Probab=75.16 E-value=6.6 Score=20.11 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.8 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+.+.-...++ +|-|++.||+.-|+ +.+|||++..+.+++-..+......+..-.+++.++ T Consensus 16 ~Il~aa~~l~~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 80 (198) T 3cjd_A 16 KLIDLAEAQIEAEGLASLRARELARQADC-AVGAIYTHFQDLNALTLEVNGRTFARLGAAVGAVVA 80 (198) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHC---- T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999749352579999999787-545899984987889999999999999999999874 No 49 >>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:) Probab=75.01 E-value=2 Score=23.60 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=39.2 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+.+.-...++ .|-|++.||+.-|+ +.+|||++..+.+++-.........+....+++.+. T Consensus 26 ~Il~aA~~l~~~~G~~~~si~~Ia~~agv-s~~tiY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~ 90 (207) T 3bjb_A 26 RXLEAAIELATEKELARVQXHEVAKRAGV-AIGTLYRYFPSKTHLFVAVXVDQIDRXGVGFKKSAP 90 (207) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHTTCC-------- T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999739130669999998683-912064665999999999999999999999998743 No 50 >>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:) Probab=74.86 E-value=6.7 Score=20.06 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=45.4 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +-++|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+.....+..++...+..+.+. T Consensus 16 a~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (197) T 2gen_A 16 ALACFSEHGVDATTIEXIRDRSGA-SIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVR 85 (197) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCC-CHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999869351779999998484-9641345189879999999999999999989987612334069999 No 51 >>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A (A:) Probab=74.36 E-value=5.1 Score=20.85 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=34.7 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQC 74 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~ 74 (185) +..++..-+ +|-|++.||+.-|+ +.+|||++..+.+++-.....-... T Consensus 17 a~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~ 65 (195) T 3frq_A 17 ATVVLKRCGPIEFTLSGVAKEVGL-SRAALIQRFTNRDTLLVRMMERGVE 65 (195) T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHH T ss_conf 999999849230779999998789-9404887493999999999999999 No 52 >>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:) Probab=73.97 E-value=6.9 Score=20.00 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=32.4 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 99999999985----8923899961588988889999983398999999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) .+.+.-.+.++ .|-|++.||+.-|+ +.+|||....+.+++-... T Consensus 44 ~Il~aA~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sKe~L~~~~ 91 (225) T 2id3_A 44 AVLLAAGDALAADGFDALDLGEIARRAGV-GKTTVYRRWGTPGGLAADL 91 (225) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHH T ss_conf 99999999999839340779999998189-9664135789999999999 No 53 >>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64) Probab=73.84 E-value=5.8 Score=20.50 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=31.3 Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999999985---89238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +-+-+-.|++.|+ .+.++++|++.-|+| .+|+|+-++. T Consensus 6 s~~r~l~iL~~l~~~~~~~t~~eia~~~glp-~st~~Rll~t 46 (64) T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMVV 46 (64) T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 9999999999997289998999999987919-9999999999 No 54 >>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72) Probab=73.84 E-value=4.6 Score=21.14 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=32.5 Q ss_pred CHHHHHHHHHHHH-CCH--HHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 8999999999985-892--389996158898888999998339 Q gi|254781188|r 22 SPELFAGILDQVA-NGK--ALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 22 s~Eiad~Ic~rIA-~Ge--SLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ..++.+.|++.+. +|. |.+.||+..|+.|-+||+.+|..= T Consensus 8 q~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~L 50 (72) T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (72) T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 9999999999999829897699999982999737899987513 No 55 >>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:) Probab=73.78 E-value=7.1 Score=19.88 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=42.7 Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +.+..+|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+.....+.+.. T Consensus 18 ~aA~~l~~~~G~~~~si~~IA~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 79 (210) T 2uxu_A 18 EAAERAFYKRGVARTTLADIAELAGV-TRGAIYWHFNNKAELVQALLDSLHETHDHLARASES 79 (210) T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHTC-CHHHHHHHCSSSHHHHHHHHHHTGGGGHHHHHHHHC T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999859352889999998688-954376418999999997699999999999999872 No 56 >>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81) Probab=73.77 E-value=7.1 Score=19.88 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 999999999985----89238999615889888899999833989999999 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185) .++.+.-++.+. +|-|++.||+.-|+ +.+|||......+++-.... T Consensus 19 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~~iY~~F~sk~~L~~~~~ 68 (81) T 2qtq_A 19 DLLLQTASNIXREGDVVDISLSELSLRSGL-NSALVKYYFGNKAGLLKALL 68 (81) T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHCC-CHHHHHHHHSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH T ss_conf 999999999999719663789999999790-98899777565999999999 No 57 >>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} (A:) Probab=73.22 E-value=3.7 Score=21.78 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=30.9 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999998589238999615889888899999833 Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) .--+||..++.|.|.+.|+...++ +..||...+.. T Consensus 20 ~E~~vl~~~~~G~s~~eIA~~L~i-s~~TV~~~~~~ 54 (79) T 1x3u_A 20 RERQVLSAVVAGLPNKSIAYDLDI-SPRTVEVHRAN 54 (79) T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999999936999999889897-89999999999 No 58 >>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:) Probab=72.23 E-value=4.8 Score=21.07 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=37.6 Q ss_pred HHHHH---HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999---999985-8923899961588988889999983398999999999997379999998 Q gi|254781188|r 24 ELFAG---ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 24 Eiad~---Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) .+.+. ++..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-.... ....+.+.+.+ T Consensus 15 ~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~yF~sK~~L~~~~~---~~~~~~~~~~~ 74 (196) T 3he0_A 15 QILAAAEQLIAESGFQGLSXQKLANEAGV-AAGTIYRYFSDKEHLLEEVR---LNVAKRIASAV 74 (196) T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHHH---HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHH T ss_conf 99999999999739130679999998099-97865111899999999999---99899999999 No 59 >>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} (A:) Probab=72.18 E-value=4.3 Score=21.37 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=39.7 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+.+.-.+.++ +|-|++.||+.-|+ +.+|||++..+.+++-..+.+....+....++..++ T Consensus 39 ~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~ 103 (237) T 3kkd_A 39 AILDAAXRLIVRDGVRAVRHRAVAAEAQV-PLSATTYYFKDIDDLITDTFALFVERNAEALSAFWS 103 (237) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999749250879999999892-989998878899999999999999999999999873 No 60 >>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} (A:) Probab=71.84 E-value=7.9 Score=19.59 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=42.0 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999985-892389996158898888999998339899999999999737999999862002300564 Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEEL 94 (185) Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~ 94 (185) -.+|..-+ +|-|++.||+.-|+ +.+|||....+.+++-.........+.....++.+....+..+.. T Consensus 26 ~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (211) T 3him_A 26 IEVFAAKGYGATTTREIAASLDM-SPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRL 93 (211) T ss_dssp HHHHHHHCSTTCCHHHHHHHTTC-CTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 99999849250779999999689-965222238989999999999887899999987410012309999 No 61 >>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:) Probab=71.69 E-value=8 Score=19.56 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=43.6 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 9999999985-89238999615889888899999833989999999999973799999986200230056 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEE 93 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee 93 (185) .+..++..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-.........+..-.++++++...+..+. T Consensus 15 aA~~l~~~~G~~~~si~~IA~~agv-s~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (235) T 2fbq_A 15 AAEQLFAEKGFAETSLRLITSKAGV-NLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEA 83 (235) T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 9999999859340779999999793-98899998699999999999999999999999998535673012 No 62 >>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=71.54 E-value=6.1 Score=20.35 Aligned_cols=63 Identities=8% Similarity=0.063 Sum_probs=40.5 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999985-89238999615889888899999833989999999999973799999986200230 Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPT 90 (185) Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~ 90 (185) -.++..-+ +|-|++.||+.-|+ +.+|||....+.+++-.........+........+....+. T Consensus 21 ~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (204) T 3eup_A 21 APVFNVKGLAGTSLTDLTEATNL-TKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTY 84 (204) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTC-CHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSH T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999739462889999999790-99999776456479999999999999999999987435888 No 63 >>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} (A:) Probab=71.26 E-value=8.1 Score=19.50 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=44.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999985892389996158898888999998339899999999999737999999862 Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+..++..-+-.-|++.||+.-|+ +.+|||.+..+.+++-..+.+....+....++++++ T Consensus 23 aa~~l~~~~G~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 82 (194) T 2q24_A 23 AAVRVFSEEGLDAHLERIAREAGV-GSGTLYRNFPTREALIEAAYRNEVARLCDSVPGLLA 82 (194) T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTC-CHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999986956779999998387-801199877988999999999999999998787523 No 64 >>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:129-215) Probab=71.22 E-value=3.6 Score=21.84 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ..--+|+..++.|.|.+.|+..-|+ |.+||...+.. T Consensus 29 ~~E~~vl~l~~~G~s~~eIA~~L~i-S~~TV~~~~~~ 64 (87) T 1a04_A 29 PRERDILKLIAQGLPNKMIARRLDI-TESTVKVHVKH 64 (87) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEHHHHCC-CHHHHHHHHHH T ss_conf 8999999999849984401898687-57799999999 No 65 >>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} (3:) Probab=70.99 E-value=2.4 Score=23.00 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=47.9 Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999-98589238999615889888899999833----98999999999997379999998620023 Q gi|254781188|r 24 ELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLEEPAP 89 (185) Q Consensus 24 Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE~~a~ 89 (185) .+...|-. |...|.|...++..-|+ +.+|+.+|.+. ..+.-.+++++.....+.++++.-+.+.. T Consensus 17 ~~g~~lk~~R~~~g~sq~elA~~~gi-s~~~i~~~E~G~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~ 86 (92) T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGM-GQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYE 86 (92) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999929999999988887-88579999759999999999999999896999996789999999 No 66 >>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86) Probab=70.80 E-value=2.9 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=32.7 Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999999985---89238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +-+.+-.|++.|+ .|.+++.|++.-||| .+|+++-|+. T Consensus 19 s~~r~l~IL~~l~~~~~~~tl~eia~~lg~~-~st~~RlL~t 59 (86) T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLLT 59 (86) T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 9999999999997379996999999997939-9999999999 No 67 >>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} (A:1-85) Probab=70.18 E-value=7.2 Score=19.87 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.4 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 892389996158898888999998339899999999 Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) +|-|++.||+.-|+ +.+|||++..+.+++-..... T Consensus 42 ~~~ti~~Ia~~agv-s~~t~Y~~F~~K~~L~~~~~~ 76 (85) T 2zb9_A 42 AQLTFERVARVSGV-SKTTLYKWWPSKGALALDGYF 76 (85) T ss_dssp GGCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHHHH T ss_pred CCCCHHHHHHHHCC-CCCCHHHHHCCHHHHHHHHHH T ss_conf 40689999998563-648412720989999999999 No 68 >>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=69.64 E-value=8.8 Score=19.27 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=44.2 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 9999999998---5-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) .+.+.-+..+ + +|-|++.||+.-|+ +.+|||++..+.+++-.........+........+....+..+.+. T Consensus 15 ~Il~aa~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (216) T 3f0c_A 15 LIINAAQKRFAHYGLCKTTXNEIASDVGX-GKASLYYYFPDKETLFEAVIKKEQNVFFDEXDKILNSGIDATALLK 89 (216) T ss_dssp HHHHHHHHHHHHHCSSSCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99999999999749040789999998791-9878977759999999999999999999999999846999999999 No 69 >>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} (A:) Probab=69.07 E-value=9 Score=19.20 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=42.9 Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98589238999615889888899999833----98999999999997379999998 Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEI 83 (185) |...|.|...+++.-|+ +.+|+.+|.+. +.+.-.+++++.....+.|+++. T Consensus 23 R~~~glt~~~la~~~gi-s~~~i~~~e~g~~~~~~~~l~~i~~~l~v~~~~ll~~~ 77 (83) T 3f6w_A 23 RSAAGITQKELAARLGR-PQSFVSKTENAERRLDVIEFXDFCRGIGTDPYALLSKL 77 (83) T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHH T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99829999999988538-99999999879989999999999999399899998650 No 70 >>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (A:1-65) Probab=68.82 E-value=5.4 Score=20.68 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=38.7 Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC---C--HHHHHHHHHHHHHHHHHHHH Q ss_conf 98589238999615889888899999833---9--89999999999973799999 Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK---D--LKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k---d--eEfreqYa~Are~qaD~laE 81 (185) +...|.|...+++.-|+ +.+|+.+|.+. . .+.-.+.++|.....+.|++ T Consensus 10 r~~~g~sq~~lA~~~gi-s~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~ 63 (65) T 1b0n_A 10 RKEKGYSLSELAEKAGV-AKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (65) T ss_dssp HHHTTCCHHHHHHHHTC-CHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHC T ss_conf 99849999999878586-7999999987998998999999999998988999828 No 71 >>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:) Probab=67.69 E-value=9.6 Score=19.01 Aligned_cols=70 Identities=9% Similarity=0.118 Sum_probs=45.6 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 9999999985-8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) .+-.+|..-+ .|-|++.||+.-|+ +.+|||....+.+++-.........+.....++.+....+..+... T Consensus 22 aa~~lf~~~G~~~~ti~~Ia~~agv-s~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (204) T 2ibd_A 22 IAATLFAERGLRATTVRDIADAAGI-LSGSLYHHFDSKESXVDEILRGFLDDLFGKYREIVASGLDSRATLE 92 (204) T ss_dssp HHHHHHHHHCSTTCCHHHHHHHTTS-CHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 9999999849341779999998688-8306888769999999999999999999999998630200589999 No 72 >>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2jk3_A 2fx0_A (A:1-70) Probab=67.62 E-value=5.9 Score=20.43 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=30.0 Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 999985-8923899961588988889999983398999999 Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) +|..-+ ++-|++.||+.-|+ +.+|||++..+.+++-... T Consensus 19 l~~~~G~~~~ti~~Ia~~agi-s~~~~Y~~F~~Ke~L~~~~ 58 (70) T 2jj7_A 19 KFGERGYEGTSIQEIAKEAKV-NVAMASYYFNGKENLYYEV 58 (70) T ss_dssp HHHHHHHHHCCHHHHHHHHTS-CHHHHHHHHSSHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCC-CHHHHCCCCCCHHHHHHHH T ss_conf 999859140779999988198-8400104799999999999 No 73 >>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} (A:) Probab=67.57 E-value=2.9 Score=22.55 Aligned_cols=69 Identities=9% Similarity=0.008 Sum_probs=45.6 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 9999999998---5-89238999615889888899999833989999999999973799999986200230056 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEE 93 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee 93 (185) .+.+.-.+.+ + .|-|++.||+.-|+ +.+|||....+.+++-.........+.....++.+....+..+. T Consensus 34 ~Il~aa~~l~~~~G~~~~t~~~IA~~aGv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (212) T 2np3_A 34 AILTAARVCFAERGFDATSLRRIAETAGV-DQSLVHHFYGTKENLFLQALELPGKIEEAITAAAQGGLDGIGER 106 (212) T ss_dssp -CHHHHHHHC----------------------------CCC-CHHHHHHHCHHHHHHHHHHHHTSSCSTTHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 99999999999859240679999999694-98899998788999999888877789999887641577779999 No 74 >>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:) Probab=67.35 E-value=9.8 Score=18.97 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=38.2 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-89238999615889888899999833989999999999973799999 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laE 81 (185) +-+++.+-+ +|-|++.||+.-|+ +.+|||+.....+++-....+....+.....+ T Consensus 11 a~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~ 66 (179) T 2eh3_A 11 SKELFFEKGYQGTSVEEIVKRANL-SKGAFYFHFKSKEELITEIIERTHKKIISLFE 66 (179) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998739350759999998681-93401142899999999999999999999998 No 75 >>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} (A:) Probab=67.33 E-value=9.8 Score=18.97 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=47.9 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 999999999985----8923899961588988889999983398999999999997379999998620023005640 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185) +.+.+.-.+.++ .|-|++.||+.-|+ +.+|||.+..+.+++-.........+......+++....+..+.+. T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (203) T 3ccy_A 17 DTIIERAAAXFARQGYSETSIGDIARACEC-SKSRLYHYFDSKEAVLRDXLTTHVDSLLERCRQVLYGSNEPKTRFL 92 (203) T ss_dssp HHHHHHHHHHHHHTCTTTSCHHHHHHHTTC-CGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999999999729551879999998582-9430444189999999999999999999999975035898999999 No 76 >>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183) Probab=67.18 E-value=6.5 Score=20.17 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.4 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999999985892389996158898888999998339 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .++|..+-+.|.+-.+|.+..|. +.++||+-|.+. T Consensus 7 ~~~V~~L~~~G~g~t~IAk~LgI-~R~sVYriL~~~ 41 (42) T 1gdt_A 7 RDAVLNMWQQGLGASHISKTMNI-ARSTVYKVINES 41 (42) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSC T ss_pred HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHC T ss_conf 99999999879999999999892-999999999704 No 77 >>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95) Probab=66.94 E-value=2.9 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.7 Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999999985---89238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +-+-+-.|++.|+ .|.++..|++.-|+| .+|+++-|+. T Consensus 21 s~~r~l~iL~~l~~~~~~~~~~eia~~lgl~-~st~~RlL~t 61 (95) T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVAT 61 (95) T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 9999999999997479998999999997929-8999999999 No 78 >>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} (A:) Probab=66.68 E-value=10 Score=18.88 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=39.1 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998---5-8923899961588988889999983398999999999997379999998 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) .+.+.-.+.+ + +|-|++.||+.-|+ +.+|||++..+.+++-.........+....++++ T Consensus 13 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~ 75 (203) T 2np5_A 13 RLAAALFDVAAESGLEGASVREVAKRAGV-SIGAVQHHFSTKDEXFAFALRTLVDKLLARLSEV 75 (203) T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999709230779999998689-9632200689999999999999999999999987 No 79 >>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72) Probab=66.67 E-value=5.1 Score=20.86 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=29.7 Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 5892389996158898888999998339899999999 Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) -.+-|++.||+.-|| +.+|||+...+.+++-....+ T Consensus 26 ~~~~t~~~ia~~~gv-s~~~~Y~~F~~K~~l~~~~~~ 61 (72) T 3dew_A 26 FYGVSIRELAQAAGA-SISXISYHFGGKEGLYAAVLQ 61 (72) T ss_dssp GGGCCHHHHHHHHTC-CHHHHHHHSCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 241779999999693-999996665899999988889 No 80 >>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} (A:1-73) Probab=66.55 E-value=8 Score=19.54 Aligned_cols=45 Identities=7% Similarity=0.259 Sum_probs=33.7 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 9999999998---5-89238999615889888899999833989999999 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185) .+.+...+.+ + +|-|++.||+.-|+ +.+|||++..+.+++-..+. T Consensus 16 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~~~Y~~F~~ke~L~~~~~ 64 (73) T 2fq4_A 16 AILSASYELLLESGFKAVTVDKIAERAKV-SKATIYKWWPNKAAVVXDGF 64 (73) T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHH T ss_conf 99999999999849240779999999692-88775103799999999999 No 81 >>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:) Probab=66.44 E-value=4.9 Score=20.98 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +---+||..++.|.|.+.|...-|+ |..||...+.. T Consensus 24 ~rE~~Vl~ll~~G~s~~~IA~~L~i-S~~TV~~~~~~ 59 (82) T 1je8_A 24 PRERDILKLIAQGLPNKXIARRLDI-TESTVKVHVKH 59 (82) T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999999928999999768488-89999999999 No 82 >>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} (A:) Probab=66.38 E-value=4.9 Score=20.97 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ..--+||..++.|.+.+.|+..-|+ |.+||...+.. T Consensus 14 ~rE~~vl~~~~~G~s~~eIA~~l~i-s~~TV~~~~~~ 49 (74) T 1fse_A 14 KREREVFELLVQDKTTKEIASELFI-SEKTVRNHISN 49 (74) T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999999927999999999689-87799999999 No 83 >>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} (A:) Probab=66.04 E-value=10 Score=18.80 Aligned_cols=70 Identities=9% Similarity=0.182 Sum_probs=43.1 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862002300564 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEEL 94 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~ 94 (185) .|.+.-.+.++ .|-|++.|++.-|| +.+|||....+.+++-..+..-...+....+.+++....+..+.+ T Consensus 45 ~Il~aA~~lf~~~G~~~~Ti~~IA~~agv-s~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (273) T 3c07_A 45 LILETAXRLFQERGYDRTTXRAIAQEAGV-SVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREVLARETDLEARL 118 (273) T ss_dssp HHHHHHHHHHHHTCSTTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99999999999739220689999999791-988998986987889999999999999999999983599999999 No 84 >>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79) Probab=65.61 E-value=11 Score=18.75 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=37.2 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985----8923899961588988889999983398999999999997379999998 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) .+.+.....+. +|-|++.||+.-|+ +.+|||++..+.+++-.... +...+.+.+.+ T Consensus 12 ~il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~ke~L~~~~~---~~~~~~~~~~~ 71 (79) T 3dpj_A 12 QIVAAADELFYRQGFAQTSFVDISAAVGI-SRGNFYYHFKTKDEILAEVI---RLRLARTAQXL 71 (79) T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHH---HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHH---HHHHHHHHHHH T ss_conf 99999999999749351779999998585-95337785599999999999---99999999999 No 85 >>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} (A:) Probab=65.37 E-value=2.2 Score=23.27 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.6 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +-++|..-+ .|-|++.||+.-|+ +.+|||++..+.+++-.........+.....+..++ T Consensus 22 A~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 81 (210) T 2qco_A 22 ALELFLTKGYQETSLSDIIKLSGG-SYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQ 81 (210) T ss_dssp HHHHHHHTTTTTCCHHHHHHHHCT-TCTTCSSSTTSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHCCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999729452789999987299-974036529998999999999999999999999876 No 86 >>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71) Probab=64.53 E-value=11 Score=18.61 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=31.9 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 9999985-892389996158898888999998339899999999 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) .++..-+ +|-|++.||+.-|+ +.+|||+...+.+++-..... T Consensus 13 ~l~~~~G~~~~t~~~Ia~~agi-s~~t~y~~F~~Ke~L~~~~~~ 55 (71) T 3bqz_B 13 ELFIKNGYNATTTGEIVKLSES-SKGNLYYHFKTKENLFLEILN 55 (71) T ss_dssp HHHHHHTTTTCCHHHHHHHTTC-CHHHHHHHTSSHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 9999759151779999998790-988881438899999999999 No 87 >>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74) Probab=63.10 E-value=12 Score=18.44 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=31.2 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 999999858923899961588988889999983398999999 Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) +.+...=-++-|++.||+.-|| +.+|||+...+.+++-..+ T Consensus 19 ~l~~~~G~~~~ti~~Ia~~~gv-s~~t~Y~yF~~Ke~l~~~~ 59 (74) T 2d6y_A 19 AEFARHGIAGARIDRIAAEARA-NKQLIYAYYGNKGELFASV 59 (74) T ss_dssp HHHHHHTTTSCCHHHHHHHHTC-CHHHHHHHHSSHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH T ss_conf 9999749140779999998591-9889967877999999999 No 88 >>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} (L:) Probab=63.05 E-value=8.1 Score=19.51 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=38.0 Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHH Q ss_conf 985892389996158898888999998339----89999999999973799999 Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laE 81 (185) +-..|.|...+++.-|+ +.+|+.+|.... .+.-.+++++...-.+.|++ T Consensus 14 r~~~~ls~~~la~~~gi-s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~ 66 (68) T 2r1j_L 14 RKKLKIRQAALGKMVGV-SNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 (68) T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC T ss_conf 99849999999989697-999999998799899999999999997978999837 No 89 >>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} (A:) Probab=63.03 E-value=9 Score=19.21 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=40.4 Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999-985892389996158898888999998339----899999999999737999999862 Q gi|254781188|r 24 ELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEILE 85 (185) .+...|=. |...|.|..+++..-|| +.+|+.+|.+.. .+.-..++.+.....+.|+..-.+ T Consensus 10 ~ig~~lk~~r~~~glsq~ela~~~gi-s~~~i~~~e~g~~~p~~~~l~~i~~~l~i~~~~l~~~~~~ 75 (84) T 2ef8_A 10 XLVQLLTKLRKEASLSQSELAIFLGL-SQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHC T ss_conf 99999999999859999999998541-5877999983996899999999999948981047898812 No 90 >>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* (A:155-225) Probab=62.51 E-value=8.6 Score=19.36 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=31.0 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999998589238999615889888899999833 Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) .--+|+..++.|.|.++|+..-|+ +..||...+.. T Consensus 9 ~E~~vl~~~~~G~s~~eIA~~l~i-s~~TV~~~~~~ 43 (71) T 3klo_A 9 REQQIIKLLGSGASNIEIADKLFV-SENTVKTHLHN 43 (71) T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 899999999749979999999798-99999999999 No 91 >>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66) Probab=62.35 E-value=2.4 Score=23.04 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=29.9 Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 999985-892389996158898888999998339899999 Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185) Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185) ++...+ ++-|++.||+.-|+ |.+|||.+..+.+++-.. T Consensus 23 l~~~~G~~~~s~~~Ia~~~gv-s~~~iY~~F~~K~~L~~~ 61 (66) T 2ras_A 23 IVEERGGAGLTLSELAARAGI-SQANLSRYFETREDLXEA 61 (66) T ss_dssp HHHHHTSSCCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHH T ss_conf 999759020679999998684-875687860877899999 No 92 >>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236) Probab=62.12 E-value=7.1 Score=19.91 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999998589238999615889888899999833 Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ---+|+..++.|.+-+.|+..-|+ |.+||...+.. T Consensus 7 ~E~~vl~l~~~G~~~~eIA~~l~i-S~~tV~~~~~~ 41 (64) T 2q0o_A 7 REMLCLVWASKGKTASVTANLTGI-NARTVQHYLDK 41 (64) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCC-CHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999998759999999999599-99999999999 No 93 >>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} (A:) Probab=62.06 E-value=12 Score=18.32 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 999999999985----8923899961588988889999983398999999 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) ..+.+.-+..+. .|-|++.||+.-|+ +.+|||++..+.+++-... T Consensus 33 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agv-s~~t~Y~~F~sK~~L~~~~ 81 (226) T 2pz9_A 33 QRIVAAAKEEFARHGIAGARVDRIAKQART-SKERVYAYFRSKEALYAHV 81 (226) T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTTS-CHHHHHHHCSSHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHH T ss_conf 999999999999849341879999999489-9555242299999999999 No 94 >>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:) Probab=61.40 E-value=7.4 Score=19.77 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +---+|+..++.|.|...|+..-++ |..||...+.. T Consensus 30 ~rE~~vl~ll~~G~s~~eIA~~L~i-S~~TV~~~~~~ 65 (95) T 3c57_A 30 DQERTLLGLLSEGLTNKQIADRMFL-AEKTVKNYVSR 65 (95) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999999917987998488566-88899999999 No 95 >>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:) Probab=61.38 E-value=13 Score=18.24 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=46.9 Q ss_pred CCHHHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5899999999-998589238999615889888899999833----9899999999999737999999862 Q gi|254781188|r 21 YSPELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 21 Ys~Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185) ....+...|- .|...|.|...++..-|+ +.+|+.+|.+- ..+.-.+++++.....+.++..-.+ T Consensus 8 ~~~~~~~~lk~~r~~~glsq~~lA~~~gv-s~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~~~~~~ 76 (82) T 3clc_A 8 LLSKVSFVIKKIRLEKGMTQEDLAYKSNL-DRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76 (82) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTS-CHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHH T ss_conf 99999999999999849999999615574-7989999976999999999999999969899999741088 No 96 >>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} (A:1-96) Probab=61.27 E-value=12 Score=18.45 Aligned_cols=63 Identities=5% Similarity=-0.020 Sum_probs=49.0 Q ss_pred CHHHHHHHHH--HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999--98589238999615889888899999833----9899999999999737999999862 Q gi|254781188|r 22 SPELFAGILD--QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 22 s~Eiad~Ic~--rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185) ...+...++. |-..|.|...+++..|+ +.+|+.+|.+. ..+.-.+++++.....+.++..-.+ T Consensus 8 ~~~~~~~~lk~~R~~~gltq~~lA~~~gi-s~~~is~~e~g~~~ps~~~l~~la~~l~v~~~~l~~~~~~ 76 (96) T 2eby_A 8 PTTPGDILLYEYLEPLDLKINELAELLHV-HRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAA 76 (96) T ss_dssp CCCHHHHHHHHTTTTTTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 74846999999877679999999998788-9999999993876799999999999989489999987998 No 97 >>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:) Probab=61.05 E-value=5.2 Score=20.80 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999999998589238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) .---+||..++.|.+-..|+..-|+ |.+||...+.. T Consensus 32 ~rE~~vl~~l~~G~t~~eIA~~L~i-s~~TV~~~~~~ 67 (91) T 2rnj_A 32 EREMEILLLIAKGYSNQEIASASHI-TIKTVKTHVSN 67 (91) T ss_dssp SHHHHHHHHHHTTCCTTHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999999938999999989797-99899999999 No 98 >>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:) Probab=60.90 E-value=12 Score=18.35 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=48.1 Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 9985892389996158898888999998339----------899999999999737999999862002300 Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----------LKLQEAYTEALQCRLDLLAEELLEEPAPTA 91 (185) Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----------eEfreqYa~Are~qaD~laEEILE~~a~~~ 91 (185) .|...|.|+..+.+.-|+ +.+|+.+|-+.+ -.+-.+|+++.....|.++...-+...+.. T Consensus 11 ~R~~~glt~~elA~~~gi-s~~~is~~E~g~~~p~~~~~~~~~~l~~ia~~l~i~~~~l~~~~~~~~~~~~ 80 (130) T 3fym_A 11 RRERLGMTLTELEQRTGI-KREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQ 80 (130) T ss_dssp HHHHTTCCHHHHHHHHCC-CHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTTTSCCCC T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC T ss_conf 999969999999988298-9999999985896546431699999999999959599999999987646543 No 99 >>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} (A:199-258) Probab=60.58 E-value=7.8 Score=19.61 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=30.3 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999998589238999615889888899999833 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) --+|+..++.|.+-..|+..-++ |.+||...+.. T Consensus 4 E~~vl~~~~~G~t~~eIA~~l~i-s~~TV~~~~~~ 37 (60) T 3clo_A 4 EKEILRCIRKGLSSKEIAATLYI-SVNTVNRHRQN 37 (60) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 99999999859999999999599-99999999999 No 100 >>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:144-208) Probab=60.06 E-value=7.7 Score=19.66 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=30.3 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999998589238999615889888899999833 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) --+|+..++.|.+..+|...-|+ +..||...+.. T Consensus 4 E~~vl~l~~~G~t~~eIA~~l~i-S~~TV~~~~~~ 37 (65) T 1yio_A 4 EQQVLQLTIRGLMNKQIAGELGI-AEVTVKVHRHN 37 (65) T ss_dssp HHHHHHHHTTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHCCC-CHHHHHHHHHH T ss_conf 99999999816629999998188-68999999999 No 101 >>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:) Probab=59.88 E-value=11 Score=18.53 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=28.0 Q ss_pred HHHHHH-HHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999999-99998-5892389996158898888999998339 Q gi|254781188|r 23 PELFAG-ILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 23 ~Eiad~-Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) +++-.. |...+ ..+.+..++++.-|| +++|||++|++. T Consensus 49 ~~~e~~~i~~~L~~~~gn~~~aA~~LGi-sR~TL~rklkk~ 88 (91) T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLGW-GAATLTAKLKEL 88 (91) T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTC-CHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHH T ss_conf 9999999999999949949999999798-999999999987 No 102 >>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} (A:) Probab=59.23 E-value=6.5 Score=20.14 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.2 Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 9999999998---5-892389996158898888999998339899999999999737 Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRL 76 (185) Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qa 76 (185) .+.+.-.+.+ + .|-|++.||+.-|+ +.+|||++..+.+++-..+......+. T Consensus 32 ~Il~aA~~l~~~~G~~~~ti~~Ia~~agv-s~~tlY~~F~sK~~L~~~~~~~~~~~~ 87 (215) T 2qko_A 32 ALVNAAIEVLAREGARGLTFRAVDVEANV-PKGTASNYFPSRDDLFDQVGKRIHERL 87 (215) T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHSSS-TTTCHHHHCSCHHHHHHHHHHHGGGTC T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999839230789999999689-968401138998999999999999999 No 103 >>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* (A:1-67) Probab=58.85 E-value=10 Score=18.86 Aligned_cols=35 Identities=6% Similarity=0.175 Sum_probs=29.4 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 892389996158898888999998339899999999 Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) +|-|++.||+.-|+ +.+|||.+..+.+++-..... T Consensus 25 ~~~t~~~Ia~~agv-s~~~~Y~~F~~k~~L~~~~~~ 59 (67) T 2opt_A 25 DALSMRRLAQELKT-GHASLYAHVGNRDELLDLVFD 59 (67) T ss_dssp GGCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHHH T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 52579999999792-987999987999999999999 No 104 >>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} (A:) Probab=58.63 E-value=14 Score=17.93 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=49.1 Q ss_pred CHHHHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999-8589238999615889888899999833----9899999999999737999999862 Q gi|254781188|r 22 SPELFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 22 s~Eiad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185) ...+...|... ...|.|...+|+.-|+ +.+||.+|.+. ..+.-.+++++...-.+.++++..+ T Consensus 8 ~~~i~~~l~~~r~~~gltq~~la~~~gi-s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 75 (77) T 2b5a_A 8 KRKFGRTLKKIRTQKGVSQEELADLAGL-HRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEE 75 (77) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC T ss_conf 9999999999999809999999989697-9999999985999999999999999979889998452357 No 105 >>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:) Probab=58.24 E-value=5 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 389996158898888999998339 Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ++..+|...|+ |.+|||+|+++- T Consensus 12 ~~~eva~~lgi-s~~ti~~~~~~G 34 (66) T 1z4h_A 12 DLKFIMADTGF-GKTFIYDRIKSG 34 (66) T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHH T ss_pred CHHHHHHHHCC-CHHHHHHHHHCC T ss_conf 49999999797-899986673189 No 106 >>2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} (A:) Probab=56.95 E-value=8.6 Score=19.35 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHCCHHHH----HHHHCCCCCCHHHHHHHHHCCHHHH Q ss_conf 99999999985892389----9961588988889999983398999 Q gi|254781188|r 24 ELFAGILDQVANGKALG----HVLRKVGMPKYSTFYRWIKKDLKLQ 65 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr----~ICkd~gMPs~sTV~rWL~kdeEfr 65 (185) ++.-.+-..+.+|.+.. .||...|+ |.+|+++|...-+.|. T Consensus 37 ~~l~~v~~L~~~G~~~~~A~~~Va~~~~v-s~~tL~nW~~~V~g~~ 81 (99) T 2ezk_A 37 PAVQAADEMLNQGISTKTAFATVAGHYQV-SASTLRDKYYQVQKFA 81 (99) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHSCS-CHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHCCCC T ss_conf 99999999998698289999999999698-8999999999968998 No 107 >>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} (A:) Probab=56.67 E-value=10 Score=18.80 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=44.5 Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999-985892389996158898888999998339----899999999999737999999862 Q gi|254781188|r 23 PELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 23 ~Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEILE 85 (185) ..+.+.|-. |...|.|...++..-|+ +.+|+.+|.+-. .+.-.+++++.....+.++++.-+ T Consensus 11 ~~~~~~l~~~R~~~glsq~~lA~~~gi-s~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~~~~~~ 77 (80) T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGM-GQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 77 (80) T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCHHHHH T ss_conf 999999999999959989999987880-4979999888999999999999999989399998848787 No 108 >>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} (A:174-234) Probab=56.53 E-value=9.6 Score=19.02 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.6 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999998589238999615889888899999833 Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) .--+|+..++.|.|-+.|+..-++ +.+||...+.. T Consensus 4 rE~~vl~l~~~G~s~~eIA~~L~i-s~~TV~~~~~~ 38 (61) T 1l3l_A 4 KEATYLRWIAVGKTXEEIADVEGV-KYNSVRVKLRE 38 (61) T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999999759999999999698-99999999999 No 109 >>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} (A:) Probab=55.99 E-value=13 Score=18.24 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=44.5 Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999-98589238999615889888899999833-----98999999999997379999998 Q gi|254781188|r 23 PELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK-----DLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 23 ~Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k-----deEfreqYa~Are~qaD~laEEI 83 (185) ..+.+.|-. +...|.|...+++.-|+ +.+|+.+|.+- ..+.-.+++.|...-.+.|++.- T Consensus 6 ~~~~~~i~~~r~~~~~tq~~la~~~gi-s~~~i~~~e~G~~~~p~~~~l~~ia~~l~v~~~~l~~~~ 71 (78) T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGL-NQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFP 71 (78) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTCST T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCC T ss_conf 999999999999859999999999798-999999999742012079999999999896799992899 No 110 >>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:) Probab=55.71 E-value=4.1 Score=21.51 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=33.2 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999985----89238999615889888899999833989999999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185) .+.+.-.+.++ +|-|++.||+.-|+ +.+|||....+.+++-.... T Consensus 17 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~~K~~L~~~~~ 65 (195) T 2iu5_A 17 IIAKAFKDLMQSNAYHQISVSDIMQTAKI-RRQTFYNYFQNQEELLSWIF 65 (195) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CGGGGGGTCSSHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHCCCCCHHHHHHHHH T ss_conf 99999999998769740789999998596-84333012799999999999 No 111 >>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72) Probab=55.71 E-value=10 Score=18.86 Aligned_cols=35 Identities=14% Similarity=0.410 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 999999999985----892389996158898888999998 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWI 58 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL 58 (185) ..|.+.-+..++ +|-|+..||+.-|| +.++||.+. T Consensus 33 ~~Il~aA~~lf~~~G~~~~si~~Ia~~agv-s~~~iY~~F 71 (72) T 3bru_A 33 QSLIRAGLEHLTEKGYSSVGVDEILKAARV-PKGSFYHYF 71 (72) T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTC-CHHHHHHHC T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCC T ss_conf 999999999999849150679999998688-963233257 No 112 >>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} (A:) Probab=55.21 E-value=12 Score=18.38 Aligned_cols=47 Identities=13% Similarity=-0.028 Sum_probs=32.2 Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--HHHHH--HHHHHHHHHHHH Q ss_conf 9985892389996158898888999998339--89999--999999973799 Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD--LKLQE--AYTEALQCRLDL 78 (185) Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--eEfre--qYa~Are~qaD~ 78 (185) -|...|.|...+++.-|+ +.+|+++|.+.. |.+.. +.+.+...-.+. T Consensus 9 ~R~~~g~tq~~lA~~~gi-s~s~is~~e~g~~~p~~~~l~~i~~~l~v~~~~ 59 (66) T 1utx_A 9 IREKKKISQSELAALLEV-SRQTINGIEKNKYNPSLQLALKIAYYLNTPLED 59 (66) T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHH T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH T ss_conf 999859999999997596-999999998799789999999999998968999 No 113 >>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=55.13 E-value=13 Score=18.11 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999999998589238999615889888899999833 Q gi|254781188|r 23 PELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ....-.|+..|++|.+...|+...|+| .+||...|+. T Consensus 30 ~p~R~~Il~~L~~~~~~~eLa~~~~i~-~stvs~HL~~ 66 (96) T 1y0u_A 30 NPVRRKILRXLDKGRSEEEIXQTLSLS-KKQLDYHLKV 66 (96) T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHCCC-HHHHHHHHHH T ss_conf 999999999844541788999998939-8899999999 No 114 >>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} (A:) Probab=54.94 E-value=8.3 Score=19.43 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.0 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 5899999999998589238999615889888899999833 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +|+ ---+|+..++.|.+.+.|...-|+ |.+||...+.. T Consensus 35 Lt~-rE~evl~ll~~G~t~~eIA~~L~i-S~~TV~~~~~~ 72 (99) T 1p4w_A 35 LSP-KESEVLRLFAEGFLVTEIAKKLNR-SIKTISSQKKS 72 (99) T ss_dssp CCH-HHHHHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHHH T ss_pred CCH-HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 799-999999999928999999989796-99999999999 No 115 >>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75) Probab=54.63 E-value=9.5 Score=19.05 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.1 Q ss_pred CHHHHHHHHHHHHC---CHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 89999999999858---9238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVAN---GKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA~---GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +-+-+-.|++.|+. +.+++.|.+.-||| .+|+++-+.. T Consensus 12 s~~r~l~iL~~l~~~~~~~t~~eia~~~glp-~stv~Rll~t 52 (75) T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILLT 52 (75) T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 9999999999997379998999999997919-9999999999 No 116 >>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:46-103) Probab=53.73 E-value=15 Score=17.72 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHCCH-HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999999985892-38999615889888899999833 Q gi|254781188|r 23 PELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~rWL~k 60 (185) .-....++..|.+|. |+..|+-..|..+.+.|.++.++ T Consensus 9 ~~R~~~a~~~L~~~~~~i~~IA~~~Gf~~~s~F~r~Fk~ 47 (58) T 3lsg_A 9 QKRXEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKK 47 (58) T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999979999998541248889999978889999999999 No 117 >>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} (A:1-95) Probab=53.64 E-value=9.9 Score=18.95 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=27.9 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHH Q ss_conf 9999985-892389996158898888999998339899 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEf 64 (185) .+|..-+ .|-|++.||+.-|| +.++||.+..+.+++ T Consensus 59 ~l~~~~G~~~~ti~~Ia~~agv-s~~slY~~F~sK~~L 95 (95) T 2of7_A 59 GLIRQQGYEATTVEQIAERAEV-SPSTVLRYFPTREDI 95 (95) T ss_dssp HHHHHHCSTTCCHHHHHHHHTS-CHHHHHHHCSSHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHH T ss_conf 9999809552789999999793-998999986988999 No 118 >>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} (A:1-85) Probab=53.62 E-value=14 Score=17.90 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=24.5 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 999999985-892389996158898888999998 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWI 58 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL 58 (185) +.++|..-+ +|-|++.||+.-|+ +..|||.+. T Consensus 52 A~~lf~~~G~~~~si~~IA~~agv-s~~~~Y~yF 84 (85) T 3bni_A 52 CADLLDEVGYDALSTRAVALRADV-PIGSVYRFF 84 (85) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCC T ss_conf 999999849330779999998288-965201208 No 119 >>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:) Probab=53.39 E-value=16 Score=17.47 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=34.2 Q ss_pred CCCCCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 64458999999999985892--------38999615889888899999833 Q gi|254781188|r 18 CIYYSPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 18 ~i~Ys~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185) .......+.+.|.+.|..|. |.+.+|+..|+ |..||.+-+.. T Consensus 9 ~~~~~~~i~~~i~~~I~~G~l~~G~~LPs~~~La~~~~v-Sr~tvr~Al~~ 58 (102) T 1v4r_A 9 EGKGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV-AAKTVSRALAV 58 (102) T ss_dssp SSCCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS-CTTHHHHHTTT T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 998999999999999984999996998689999999797-99999999999 No 120 >>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:) Probab=53.26 E-value=13 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=29.5 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 9999998589238999615889888899999833 Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) -+++..++.|.|.+.|.+.-|+ |..||...+.. T Consensus 4 ~evl~~~~~G~s~~eIA~~l~i-S~~TV~~~~~~ 36 (61) T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHI-SIKTVETHRMN 36 (61) T ss_dssp HHHHHHHHTSCCSHHHHHHTCS-CHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999827999999989698-89999999999 No 121 >>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:) Probab=53.13 E-value=13 Score=18.08 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=29.8 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999999985892389996158898888999998339 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ..-|...|..--+.++..+.-|| +.+|+|+.|++. T Consensus 23 r~~I~~aL~~~gn~~~aA~~Lgi-sr~tL~rklkk~ 57 (61) T 1g2h_A 23 AQVLKLFYAEYPSTRKLAQRLGV-SHTAIANKLKQY 57 (61) T ss_dssp HHHHHHHHHHSCSHHHHHHHTTS-CTHHHHHHHHTT T ss_pred HHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHH T ss_conf 99999984038738999999586-189999899984 No 122 >>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:) Probab=52.79 E-value=17 Score=17.31 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=33.2 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 9999999985-892389996158898888999998339899999999 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) .+-+++..-+ .|-|++.||+.-|+ |.+|||++..+.+++-....+ T Consensus 15 aa~~l~~~~G~~~~t~~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~ 60 (192) T 2zcm_A 15 NAITLFSEKGYDGTTLDDISKSVNI-KKASLYYHYDNKEEIYRKSVE 60 (192) T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTC-CHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 9999998739350669999998790-999996763899999999999 No 123 >>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=52.28 E-value=6.8 Score=20.04 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=45.3 Q ss_pred CCCHHHHHHHHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45899999999998-589238999615889888899999833----98999999999997379999998 Q gi|254781188|r 20 YYSPELFAGILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 20 ~Ys~Eiad~Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEI 83 (185) .++..+...|-... ..|.|...+|..-|+ +.+|+.+|.+. ..+.-.+++++.....+.|+... T Consensus 9 ~~~~~ig~~ik~~R~~~~ltq~~lA~~~gi-s~~~is~~e~g~~~ps~~~l~~la~~l~v~~~~l~~~~ 76 (91) T 1x57_A 9 RVTLEVGKVIQQGRQSKGLTQKDLATKINE-KPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGK 76 (91) T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTC T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 177999999999999818869999998099-99999999769988999999999999299764665788 No 124 >>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60) Probab=51.37 E-value=9.2 Score=19.14 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=28.5 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHH Q ss_conf 99999999985----89238999615889888899999833989 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185) ++.+.-+..|+ .|-|++.||+.-|+ +.+|||.+....+| T Consensus 18 ~il~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sKee 60 (60) T 3ljl_A 18 KIXDAVVDQLLRLGYDKXSYTTLSQQTGV-SRTGISHHFPKKTD 60 (60) T ss_dssp HHHHHHHHHHHHTHHHHCCHHHHHHHHTC-CHHHHHHHCSSTHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHH T ss_conf 99999999998719020779999998688-86089888849999 No 125 >>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} (A:) Probab=51.06 E-value=8.7 Score=19.29 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=36.0 Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHH Q ss_conf 9985892389996158898888999998339----8999999999997379999 Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLA 80 (185) Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~la 80 (185) .|...|.|...++..-|+ +.+|+.+|.+.. .+.-.+++.+...-.+.++ T Consensus 18 ~R~~~gltq~~lA~~~gi-s~~~is~~e~g~~~p~~~~l~~i~~~l~v~~~~l~ 70 (76) T 3bs3_A 18 VLAEKQRTNRWLAEQXGK-SENTISRWCSNKSQPSLDXLVKVAELLNVDPRQLI 70 (76) T ss_dssp HHHHTTCCHHHHHHHHTC-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGB T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 999959989999766462-25888888502101325789999999898799995 No 126 >>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98) Probab=49.72 E-value=18 Score=17.23 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=25.2 Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999985-892389996158898888999998339 Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) |..-+. .|-.....++.-|++ .+|||++|++. T Consensus 18 I~~aL~~~~gn~s~aA~~Lgis-r~tL~rklkk~ 50 (53) T 1eto_A 18 LDMVMQYTLGNQTRAALMMGIN-RGTLRKKLKKY 50 (53) T ss_dssp HHHHHHHTTTCHHHHHHHHTSC-HHHHHHHHHHT T ss_pred HHHHHHHHCCCHHHHHHHHCCC-HHHHHHHHHHH T ss_conf 9999999299899999997989-99999999985 No 127 >>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:) Probab=49.71 E-value=19 Score=17.00 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=27.6 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999999985-892389996158898888999998339 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .+.|...+. .|-+..++++.-|+ +.+|+|++|++. T Consensus 43 ~~~I~~aL~~~~gn~~~aA~~Lgi-sr~TL~rklkk~ 78 (81) T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNM-HRRTLQRILAKR 78 (81) T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTS-CHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHC T ss_conf 999999999998309999999698-999999999972 No 128 >>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} (A:) Probab=49.59 E-value=19 Score=16.98 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=33.5 Q ss_pred HHHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999998---5-89238999615889888899999833989999999 Q gi|254781188|r 23 PELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185) Q Consensus 23 ~Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185) ..+.+.-...+ + .|-|++.||+.-|| +.+|||.+..+.+++-..+. T Consensus 19 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~aGv-s~~t~Y~~F~sK~~L~~~~~ 68 (237) T 2hxo_A 19 ERIVGAAVELLDTVGERGLTFRALAERLAT-GPGAIYWHITGKAELLGAAT 68 (237) T ss_dssp HHHHHHHHHHHHHTTTTTCCHHHHHHHHTS-CGGGGGGTCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHH T ss_conf 999999999999719441679999998688-97774104969899999999 No 129 >>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51) Probab=49.09 E-value=15 Score=17.78 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=24.3 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHH Q ss_conf 9999999985-89238999615889888899999 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRW 57 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rW 57 (185) .+.++|.+-+ +|-|++.||+.-|+ +.++||.+ T Consensus 17 aa~~lf~~~G~~~~s~~~Ia~~aGv-s~g~iY~~ 49 (51) T 3cdl_A 17 AAIAEFGDRGFEITSXDRIAARAEV-SKRTVYNH 49 (51) T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHTT T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHH T ss_conf 9999999749251889999998688-96614530 No 130 >>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:) Probab=48.76 E-value=20 Score=16.90 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=32.0 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 999999985-892389996158898888999998339899999 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185) +.++|.+-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.. T Consensus 11 a~~lf~~~G~~~~t~~~IA~~aGv-s~~tlY~~F~~Ke~L~~~ 52 (209) T 3bqy_A 11 ALDLLNESGLDTLTXRRLAQAXDV-QAGALYRYFAAKQDLLTA 52 (209) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH T ss_conf 999999739663539999998790-997999987999999999 No 131 >>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} (A:) Probab=48.65 E-value=20 Score=16.89 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 999999999985--892389996158898888999998339899999 Q gi|254781188|r 23 PELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185) Q Consensus 23 ~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185) ..+.+.-...++ .+-|++.||+.-|| +.+|||++..+.+++-.. T Consensus 14 ~~Il~aA~~lf~e~G~~s~~~IA~~agv-s~~t~Y~~F~sKe~L~~a 59 (213) T 2g7g_A 14 ERIAEAALELVDRDGDFRXPDLARHLNV-QVSSIYHHAKGRAAVVEL 59 (213) T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTS-CHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH T ss_conf 9999999999997299609999999692-854442566999999999 No 132 >>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:) Probab=48.50 E-value=20 Score=16.87 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=54.7 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998620023005640360378997 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMR 104 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~~~~~~~~lr 104 (185) +..++..-+ +|-|++.||+.-|+ +.+|||+...+.+++-.........+.....++..+ ..+..+... T Consensus 17 a~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------- 85 (183) T 1zk8_A 17 AAEIADANGVQEVTLASLAQTLGV-RSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAAE-DKRXDEAIH--------- 85 (183) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH--------- T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHH--------- T ss_conf 999999709440579999998588-943033228987889999999999999999998740-057799999--------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999988999998764665343420344331346788999999 Q gi|254781188|r 105 DRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLRE 146 (185) Q Consensus 105 ~~~~~~~~w~l~k~~p~~yg~rvs~e~~h~~~~~~~~~~~~~ 146 (185) ......|....-+|..+.--........-......+.+.. T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (183) T 1zk8_A 86 --ALGEAYVAFVRKHPGLYEATFLRDEEVRKAGDGIVKLCLQ 125 (183) T ss_dssp --HHHHHHHHHHHHCHHHHHHTTCCCHHHHHHHHHHHHHHHH T ss_pred --HHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf --9999899999989899999983563027999999999999 No 133 >>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* (A:) Probab=48.35 E-value=20 Score=16.86 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999985----89238999615889888899999833989999999999973799999986200 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEP 87 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~ 87 (185) ..|.+.-...++ .+-|++.||+.-|+ +.+|||++..+.+++-..+..-...+....++++++.. T Consensus 47 ~~Il~aA~~l~~~~G~~~~ti~~IA~~agv-s~~tiY~yF~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~ 114 (256) T 3g1l_A 47 LAILATAENLLEDRPLADISVDDLAKGAGI-SRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENP 114 (256) T ss_dssp HHHHHHHHHHTTTSCGGGCCHHHHHHHHTC-CHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999839231629999999790-99888367688899999999999999999999987276 No 134 >>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} (A:) Probab=48.26 E-value=20 Score=16.85 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=41.4 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +..++..-+ +|-|++.||+.-|+ +.+|||....+.+++-.......-.+.....++++. T Consensus 21 A~~l~~~~G~~~~t~~~IA~~aGv-s~~~iy~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 80 (211) T 3bhq_A 21 ATAAFISKGYDGTSXEEIATKAGA-SKQTVYKHFTDKETLFGEVVLSTASQVNDIIESVTT 80 (211) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999849351779999998487-901387538988999999999999999999988863 No 135 >>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:) Probab=48.14 E-value=16 Score=17.58 Aligned_cols=44 Identities=7% Similarity=0.155 Sum_probs=32.6 Q ss_pred HHHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 99999999998---5-892389996158898888999998339899999 Q gi|254781188|r 23 PELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185) Q Consensus 23 ~Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185) ..|.+.-...+ + +|-|++.||+.-|+ +.+|||.+..+.+++-.. T Consensus 22 ~~Il~aA~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~~F~sK~~L~~~ 69 (243) T 2g7l_A 22 RWIVDTAVALXRAEGLEKVTXRRLAQELDT-GPASLYVYVANTAELHAA 69 (243) T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHHTTS-CHHHHTTTCCSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHH T ss_conf 999999999999729520789999987087-866512108999999999 No 136 >>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69) Probab=47.90 E-value=21 Score=16.81 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=33.8 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999985----892389996158898888999998339899999999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) ++.+.-.+.+. .+-|++.||+.-|+ +..|||+...+.+++-..+.. T Consensus 8 ~il~aa~~~~~~~G~~~~t~~~Ia~~~gi-s~~t~Y~~F~~K~~L~~~~~~ 57 (69) T 3egq_A 8 RIIEAALRLYXKKPPHEVSIEEIAREAKV-SKSLIFYHFESKQKLLEEAVX 57 (69) T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHH T ss_conf 99999999998729230679999998683-942076508999999999999 No 137 >>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73) Probab=47.82 E-value=21 Score=16.80 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=36.9 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC-HHHHHHH Q ss_conf 58999999999985892389996158898888999998339-8999999 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD-LKLQEAY 68 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd-eEfreqY 68 (185) .+++-.+-|.-+...|.|...|+..-|+ +.+||+.++..- ..++..+ T Consensus 23 L~~~~r~v~~l~~~~g~s~~eIA~~lgi-s~~~v~~~l~ra~~~Lr~~l 70 (73) T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGV-SRQAVYDNIKRTEKILETYE 70 (73) T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999973129999999897-99999999999999997589 No 138 >>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} (A:) Probab=47.36 E-value=21 Score=16.76 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=40.1 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC---CHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 99999998589238999615889888899999833---98999--999999997379999998 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK---DLKLQ--EAYTEALQCRLDLLAEEL 83 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k---deEfr--eqYa~Are~qaD~laEEI 83 (185) ...-+.++..|.|...+++.-|+ +.+|+.+|.+- +|.+. .+.+.+..+..+.|++.- T Consensus 17 i~~~i~r~r~g~tq~~LA~~~gi-s~~~is~ie~G~~~~ps~~~l~~ia~~l~vs~~~l~~~~ 78 (86) T 2ofy_A 17 LGELLRSARGDXSXVTVAFDAGI-SVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86) T ss_dssp HHHHHHHHHTTSCHHHHHHHHTC-CHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC T ss_pred HHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHC T ss_conf 99999999980899999999707-899999998298666899999999999896999997515 No 139 >>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78) Probab=46.71 E-value=21 Score=16.69 Aligned_cols=38 Identities=8% Similarity=0.227 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999999985892--------38999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185) ...+++.|.+.|.+|. |.+.+|+..|+ |..|+.+-+.. T Consensus 6 ~~~i~~~l~~~I~~g~~~~G~~LPse~~La~~~~v-Sr~tvr~al~~ 51 (78) T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGV-SRSSLREALRV 51 (78) T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHH T ss_conf 99999999999985999981999109999999895-99999999999 No 140 >>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122) Probab=46.50 E-value=19 Score=17.06 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=28.4 Q ss_pred HHHHHHHHHCCH-HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999985892-38999615889888899999833 Q gi|254781188|r 26 FAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~rWL~k 60 (185) --.|+..|++|. +...|+..-|| +.+|+...|+. T Consensus 4 Rl~Il~~L~~~~~~~~ela~~l~~-s~stvs~HL~~ 38 (78) T 1r1t_A 4 RLRLLSLLARSELCVGDLAQAIGV-SESAVSHQLRS 38 (78) T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999998199569999999891-98899999999 No 141 >>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304) Probab=46.49 E-value=20 Score=16.96 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.8 Q ss_pred HHHHHH-HHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999-99998-589238999615889888899999833 Q gi|254781188|r 23 PELFAG-ILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~-Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +++-.. |..-+ ..|-...+..+..||+ .+|+|+.|++ T Consensus 13 ~~~E~~~I~~aL~~~~Gn~~~aA~~LGis-r~TL~rklkk 51 (51) T 1ojl_A 13 VDVEKEVILAALEKTGGNKTEAARQLGIT-RKTLLAKLSR 51 (51) T ss_dssp HHHHHHHHHHHHHTTTTCHHHHHHHHTSC-HHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCC-HHHHHHHHCC T ss_conf 99999999999999299899999998889-9999998675 No 142 >>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} (A:1-67) Probab=45.75 E-value=22 Score=16.60 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=32.7 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999985-892389996158898888999998339899999999 Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) -+++.+-+ +|-|++.||+.-|+ +.+|||+.....+++-..... T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~~gv-s~~~~y~~F~~K~~L~~~~~~ 56 (67) T 2vke_A 13 LELLNETGIDGLTTRKLAQKLGI-EQPTLYWHVKNKRALLDALAV 56 (67) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHT-CCHHHHHHHCCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHCCCHHHHHHHHH T ss_conf 99999972934178999999989-097699888899999999999 No 143 >>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106) Probab=45.42 E-value=22 Score=16.56 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=32.4 Q ss_pred CCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 58999999999985892--------38999615889888899999833 Q gi|254781188|r 21 YSPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185) ....+++.|++.|.+|. |.+.+|...|+ |..||.+-+.. T Consensus 12 ~~~~i~~~l~~~I~~g~l~~G~~LPs~~~La~~~~v-Sr~tvr~Al~~ 58 (106) T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKI-NPNTVAKAYKE 58 (106) T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999999999985999994998449999999698-98999999999 No 144 >>1adr_A P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} (A:) Probab=45.06 E-value=23 Score=16.53 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.8 Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999-85892389996158898888999998339----8999999999997379999998 Q gi|254781188|r 25 LFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 25 iad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEI 83 (185) +.+.|-.. ...|.|...+++.-|++ .+|+.+|.+.. .+.-.+.+++.....+.|+... T Consensus 6 ~~~rlk~~r~~~g~t~~ela~~~gis-~~~i~~~e~g~~~p~~~~l~~ia~~~~v~~~~l~~~~ 68 (76) T 1adr_A 6 MGERIRARRKKLKIRQAALGKMVGVS-NVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (76) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC T ss_conf 99999999999399999999996979-9899999879989999999999999699799995899 No 145 >>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} (A:1-105) Probab=45.06 E-value=23 Score=16.53 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHH-CCH--HHHHHHHCCCCC-CHHHHHHHHHCCH Q ss_conf 999999999985-892--389996158898-8889999983398 Q gi|254781188|r 23 PELFAGILDQVA-NGK--ALGHVLRKVGMP-KYSTFYRWIKKDL 62 (185) Q Consensus 23 ~Eiad~Ic~rIA-~Ge--SLr~ICkd~gMP-s~sTV~rWL~kde 62 (185) .++.+.|.+.+. .|. +.+.||...|+. |-+|+++-|+.=+ T Consensus 20 ~~IL~~I~~~~~~~g~~vtv~el~~~~~l~vS~~TvrrdL~~Le 63 (105) T 1stz_A 20 RKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLE 63 (105) T ss_dssp HHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999999742995678999987289988699999999998 No 146 >>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A (A:205-295) Probab=44.40 E-value=23 Score=16.46 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=43.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHC-CHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 6567644589999999999858-923899961588988889999983398999999 Q gi|254781188|r 14 AKKGCIYYSPELFAGILDQVAN-GKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 14 ~Kk~~i~Ys~Eiad~Ic~rIA~-GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) ...|--.+++.+.+-.--|+.+ --||..++..+.+ |.|+|..|+++=.++.+.+ T Consensus 33 ~~~~~~~l~~~l~~~a~lRl~nPe~SL~EL~~l~~i-SKSgvnhrlrKl~~ia~~l 87 (91) T 3hyi_A 33 ENMGLENLPEDLRRVALVRLRNKELSLRELGKKLNL-TKSQIYSKLKRIIKIAERF 87 (91) T ss_dssp HHTCGGGSCHHHHHHHHHHHHCTTSCHHHHHHTTTC-CHHHHHHHHHHHHHHHTTT T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC-CHHHHHHHHHHHHHHHHHH T ss_conf 836954399999999999986877789999446487-8999989999999999997 No 147 >>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230) Probab=43.80 E-value=24 Score=16.40 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=35.6 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 9999999985-892389996158898888999998339899999999999 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ 73 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are 73 (185) -+.+++..-+ .|-|++.||+.-|+ |.+|||+...+.+++-.....-.. T Consensus 8 aa~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~~F~~K~~L~~~~~~~~~ 56 (200) T 2iai_A 8 VAVQVFIERGYDGTSXEHLSKAAGI-SKSSIYHHVTGKEELLRRAVSRAL 56 (200) T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999999859362609999998693-876676607999999999999999 No 148 >>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:) Probab=43.77 E-value=17 Score=17.38 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=39.6 Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985892389996158898888999998339---899999999999737999999 Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD---LKLQEAYTEALQCRLDLLAEE 82 (185) Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd---eEfreqYa~Are~qaD~laEE 82 (185) .|...|.|...+...-|+ +.+|+.+|.+.. .+.-.+.+++.....+.+++. T Consensus 11 ~r~~~g~sq~~lA~~~gi-s~~~is~~e~g~~~~~~~l~~ia~~l~v~~~~l~~~ 64 (71) T 1zug_A 11 RRIALKMTQTELATKAGV-KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (71) T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTCCSSCSTHHHHHHHTTSCHHHHHHS T ss_pred HHHHCCCCHHHHHHHHHC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCC T ss_conf 999849999999999715-899999998799999999999999959889998389 No 149 >>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112) Probab=43.57 E-value=12 Score=18.39 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=31.8 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 589999999999858923899961588988889999983398 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) ++... -.+|..|+.-.|+++.++.-|| +++|+++.|+.=+ T Consensus 20 ~~~~~-l~~~~~v~~~gS~t~AA~~l~i-s~~avs~~i~~LE 59 (112) T 1b9m_A 20 ADPRR-ISLLKHIALSGSISQGAKDAGI-SYKSAWDAINEXN 59 (112) T ss_dssp ECHHH-HHHHHHHHHHSSHHHHHHHHTC-CHHHHHHHHHHHH T ss_pred CCHHH-HHHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHHHHH T ss_conf 59799-9999999996999999999798-9999999999999 No 150 >>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} (A:1-90) Probab=43.34 E-value=17 Score=17.35 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=36.0 Q ss_pred CCHHHHHHHH--HHHHCC-----HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5899999999--998589-----2389996158898888999998339899999999999737999999862 Q gi|254781188|r 21 YSPELFAGIL--DQVANG-----KALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 21 Ys~Eiad~Ic--~rIA~G-----eSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) +-+.-+...| +.++.| +.--.+....|| +++|+|+|-..|..|-+- .-.+||+.|. T Consensus 26 ~kqr~AA~llv~NEl~~~~neeKkTqeelA~ElGi-~R~~L~~WrTqn~~Fi~y--------~n~lAd~~Ls 88 (90) T 2ao9_A 26 AKQIQAAYLLVENELMESNNEEKRTQDEMANELGI-NRTTLWEWRTKNQDFIAF--------KSEVADSFLA 88 (90) T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTC-CHHHHHHHHHHCHHHHHH--------HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHCCHHHHHH--------HHHHHHHHHH T ss_conf 99999999999887603675667579999999574-699999886044669999--------9999999999 No 151 >>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:) Probab=42.76 E-value=24 Score=16.38 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=33.8 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999985----892389996158898888999998339899999999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) .+.+.-.+.++ +|-|++.||+.-|+ +.+|||++..+.+++-....+ T Consensus 43 ~Il~aA~~l~~~~G~~~~t~~~IA~~agv-s~~tlY~~F~sK~~L~~a~~~ 92 (214) T 2guh_A 43 LIVDAAGRAFATRPYREITLKDIAEDAGV-SAPLIIKYFGSKEQLFDALVD 92 (214) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHHSSHHHHHHHHTC T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999839030679999999398-988998886789999999999 No 152 >>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:1-76) Probab=42.32 E-value=16 Score=17.47 Aligned_cols=56 Identities=7% Similarity=0.144 Sum_probs=37.3 Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH Q ss_conf 999999999-985892389996158898888999998339----899999999999737999 Q gi|254781188|r 23 PELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLL 79 (185) Q Consensus 23 ~Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~l 79 (185) ..+...|-. +...|.|...+++.-|+ +.+|+.+|.+.. .+.-..+++|.....+.| T Consensus 10 ~~~~~~lk~~r~~~gltq~~lA~~~gi-s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 70 (76) T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGV-SKAXLGQIERGESSPTIATLWKIASGLEASFSAF 70 (76) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSS-CHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGG T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 999999999999829999999999894-9999999976997555369999987755088987 No 153 >>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} (A:) Probab=41.42 E-value=25 Score=16.29 Aligned_cols=47 Identities=6% Similarity=0.004 Sum_probs=34.4 Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHH Q ss_conf 9985892389996158898888999998339----89999999999973799 Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDL 78 (185) Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~ 78 (185) .|...|.|...++..-|+ +.+|+.+|.+.. .+.-.+.+++.....+. T Consensus 22 ~R~~~gltq~~lA~~~gi-s~~~is~~E~g~~~ps~~~l~~l~~~l~v~~~~ 72 (86) T 3eus_A 22 ARLDAGLTQADLAERLDK-PQSFVAKVETRERRLDVIEFAKWMAACEGLDVV 72 (86) T ss_dssp HHHHTTCCHHHHHHHTTC-CHHHHHHHHTTSSCCBHHHHHHHHHHTTCGGGH T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHH T ss_conf 999849999999999796-999999998899999999999999990897619 No 154 >>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:) Probab=41.26 E-value=26 Score=16.15 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 999999999985----8923899961588988889999983398999999 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) ..+.+.-.+.++ +|-|++.||+.-|+ +.+|||.+..+.+++-... T Consensus 32 ~~Il~aA~~l~~e~G~~~~si~~IA~~aGv-s~~tiY~~F~sK~~L~~av 80 (241) T 2hxi_A 32 EQILDAAAELLLAGDAETFSVRKLAASLGT-DSSSLYRHFRNKTELLRAV 80 (241) T ss_dssp HHHHHHHHHHHSSSSCCCCCHHHHHHHTTS-CHHHHHHHTSSHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH T ss_conf 999999999999719230779999999791-9879999979989999999 No 155 >>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} (A:) Probab=41.12 E-value=26 Score=16.13 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=32.7 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 999999985-892389996158898888999998339899999999 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) +..++..-+ +|-|++.||+.-|+ +.+|||....+.+++-..... T Consensus 19 a~~l~~~~G~~~~si~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~ 63 (196) T 3col_A 19 VAAIILAEGPAGVSTTKVAKRVGI-AQSNVYLYFKNKQALIDSVYA 63 (196) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHH T ss_conf 999999719552889999998689-967031058999999999999 No 156 >>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} (A:385-477) Probab=41.08 E-value=26 Score=16.13 Aligned_cols=60 Identities=7% Similarity=0.057 Sum_probs=41.0 Q ss_pred CCCCCHHHHHHHHHHHHCCH-------HHHHH------------HHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 64458999999999985892-------38999------------61588988889999983398999999999997379 Q gi|254781188|r 18 CIYYSPELFAGILDQVANGK-------ALGHV------------LRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77 (185) Q Consensus 18 ~i~Ys~Eiad~Ic~rIA~Ge-------SLr~I------------Ckd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD 77 (185) .+.|++.=|...+..+.... ||+.. .+..|-|++.|+|+=+..-.++.+-|.-|++..++ T Consensus 10 ~~~l~~~Ewk~L~~~~~~k~~~p~~~psl~~a~~~IArLGG~l~rk~dg~PG~~tlW~Gl~rL~~~~~g~~la~~~~~~ 88 (93) T 1mus_A 10 ETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQ 88 (93) T ss_dssp GGTSCHHHHHHHHHHHTTTCCTTSCTTBHHHHHHHHHHHTTCCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 7857999999999986045899999999999999999877954678999984759998999999999999999999863 No 157 >>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:) Probab=41.06 E-value=26 Score=16.13 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.1 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 8923899961588988889999983398999999 Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) +|-|++.||+.-|+ |.+|||.+..+.+++-... T Consensus 36 ~~~t~~~IA~~agv-s~~tiY~yF~sKe~L~~~~ 68 (208) T 3cwr_A 36 AAXTXEGVASEAGI-AKKTLYRFASGRADLIGLL 68 (208) T ss_dssp GGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHH T ss_pred CCCCHHHHHHHCCC-CCCCCCCCCCCHHHHHHHH T ss_conf 30479999987599-8776557899989999999 No 158 >>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96) Probab=40.44 E-value=27 Score=16.06 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=32.3 Q ss_pred CCCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHH Q ss_conf 458999999999985892--------3899961588988889999983 Q gi|254781188|r 20 YYSPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 20 ~Ys~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~ 59 (185) .....+++.|.+.|.+|. |.+++|...|+ |..||.+-+. T Consensus 29 ~~~~~i~~~i~~~I~~g~~~pG~~LPs~~~La~~~gv-sr~tvr~Al~ 75 (96) T 3eet_A 29 PAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGV-SDTVALEARK 75 (96) T ss_dssp CHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTC-CHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH T ss_conf 8799999999999984999993999179999999895-9999999999 No 159 >>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} (A:) Probab=40.43 E-value=27 Score=16.06 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=38.9 Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC--C--HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999-98589238999615889888899999833--9--89999999999973799999 Q gi|254781188|r 24 ELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK--D--LKLQEAYTEALQCRLDLLAE 81 (185) Q Consensus 24 Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k--d--eEfreqYa~Are~qaD~laE 81 (185) .+...|-. |...|.|...++..-|+ +.+|+.+|.+- . .+.-...+++...-.+.|+. T Consensus 9 ~ig~~lk~~r~~~g~sq~~lA~~~gi-s~~tis~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~ 70 (94) T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGV-SPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIE 70 (94) T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTC-CHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH-CCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCC T ss_conf 99999999999909999999998853-005678876010004789999999998958999817 No 160 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:150-212) Probab=39.89 E-value=20 Score=16.90 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=38.4 Q ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 58898888999998339899999999999737999999862002 Q gi|254781188|r 45 KVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPA 88 (185) Q Consensus 45 d~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a 88 (185) -+.+...+.||.++-.+..+.+....-....|+..+++.|++|+ T Consensus 20 ~~~~~~RRrFWE~~f~~G~~a~~v~~G~~~~A~~~l~~~L~~pl 63 (63) T 1pjq_A 20 FATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPL 63 (63) T ss_dssp CCSHHHHHHHHHHHTTCHHHHHHHHTTCHHHHHHHHHHHHTCCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC T ss_conf 57854201579987511123330110045666677665313578 No 161 >>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* (A:492-647) Probab=39.29 E-value=28 Score=15.95 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=35.4 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 9999999858923899961588988889999983398999999999997 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQC 74 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~ 74 (185) ...|+...++|.++..|++..+++ ..++.+-+..-..+..+-.++.+. T Consensus 82 ~a~il~~wi~e~~~~~I~~~~~i~-~G~i~~~~~~~~~l~~~~~~~~~~ 129 (156) T 2zj8_A 82 TALVLLAWINEVPEGEIVEKYSVE-PGDIYRIVETAEWLVYSLKEIAKV 129 (156) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999996799879999996989-999999999999999999999998 No 162 >>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50) Probab=39.16 E-value=28 Score=15.93 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=24.9 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHH Q ss_conf 99999999985----89238999615889888899999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRW 57 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rW 57 (185) .+.+.-++.++ +|-|++.||+.-|+ +.+|||.. T Consensus 12 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~~~y~~ 48 (50) T 2o7t_A 12 HIITTTCNLYRTHHHDSLTXENIAEQAGV-GVATLYRN 48 (50) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHCC T ss_conf 99999999999859140779999998588-94421227 No 163 >>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} (A:1-73) Probab=38.92 E-value=28 Score=15.91 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=38.8 Q ss_pred CHHHHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH Q ss_conf 89999999999-85892389996158898888999998339----899999999999737999 Q gi|254781188|r 22 SPELFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLL 79 (185) Q Consensus 22 s~Eiad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~l 79 (185) ...+...|-.. -..|.|.+.++..-|+ +.+|+.+|.+-. .+.-...++|...-.+.| T Consensus 10 ~~~i~~~ik~lr~~~~lsq~elA~~lgi-s~~~i~~~e~G~~~ps~~~l~~ia~~~~v~~~~l 71 (73) T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAXIEI-DPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEF 71 (73) T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 9999999999999839999999765398-9749998962467999999999999979689998 No 164 >>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:) Probab=38.45 E-value=29 Score=15.86 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=38.6 Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999985-892389996158898888999998339899999999999737999999862 Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .+..+|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-. .+.+...+.+.+.+.+ T Consensus 22 aA~~l~~~~G~~~~si~~IA~~agv-s~~t~Y~yF~sK~~L~~---~~~~~~~~~~~~~~~~ 79 (199) T 3crj_A 22 ATYRALREHGYADLTIQRIADEYGK-STAAVHYYYDTKDDLLA---AFLDYLLERFVDSIHD 79 (199) T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHH---HHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHHH T ss_conf 9999999739251889999999791-99999542798999999---9999999999999987 No 165 >>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:) Probab=37.85 E-value=29 Score=15.80 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.5 Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 999985-892389996158898888999998339 Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) |..-|. .|-.+..+.+.-|| +.+|||++|++. T Consensus 24 i~~aL~~~~gn~~~aA~~Lgi-sr~tL~~klkk~ 56 (63) T 3e7l_A 24 IEEKLREYDYDLKRTAEEIGI-DLSNLYRKIKSL 56 (63) T ss_dssp HHHHHHHTTTCHHHHHHHHTC-CHHHHHHHHHHT T ss_pred HHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHH T ss_conf 999999919989999999895-999999999994 No 166 >>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158) Probab=37.30 E-value=30 Score=15.74 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 999999999858923899961588988889999983 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185) |.+..+-..+..|.|...|.+..|+ +.++|.+.|+ T Consensus 23 E~a~a~~~l~~~g~s~~~iA~~~G~-s~~~V~~~L~ 57 (59) T 1vz0_A 23 EEARGYQALLEMGLTQEEVARRVGK-ARSTVANALR 57 (59) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH T ss_conf 9999999899988729999987599-9999856776 No 167 >>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239) Probab=37.25 E-value=30 Score=15.74 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985892389996158898888999998339899999999999737999999862 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185) .....++..+..-.....+....... ...+..|..........+........+...+...+ T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (150) T 1rp3_A 14 EVVEKLKEKLGREPTDEEVAKELGIS-TEELFKTLDKINFSYILSLEEVFRDFARDYSELIP 74 (150) T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGG T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 99999888634799999995414998-99999998720343212211122222204677652 No 168 >>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} (D:126-207) Probab=35.70 E-value=31 Score=15.58 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=40.3 Q ss_pred HHHHHHHHHHCCH-HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999985892-3899961588988889999983398999999999997379999998620 Q gi|254781188|r 25 LFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185) Q Consensus 25 iad~Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185) -|..+.+-|-.|+ +.=. +..|++ +|..+.+||++..-+.+|.........+.|+++ T Consensus 22 ~w~~L~~~v~~g~~~~Fe--~a~G~~----~~ey~~~dp~~~~~Fn~aM~~~s~~~~~~i~~~ 78 (82) T 1fp1_D 22 VWMNFKEAVVDEDIDLFK--NVHGVT----KYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEI 78 (82) T ss_dssp HHTTHHHHHHSCC--------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHH--HCCCCC----HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 787502530579988788--734998----899986298889999999888777789999986 No 169 >>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} (A:1-88) Probab=34.93 E-value=14 Score=17.97 Aligned_cols=44 Identities=16% Similarity=0.405 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 999999999985----892389996158898888999998339899999 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185) ..|.+.....+. +|-+++.||+.-|| +.++||....+.+++-.. T Consensus 28 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~~iY~~F~~K~~L~~a 75 (88) T 3fiw_A 28 ETVITEALDLLDEVGLDGVSTRRLAKRLGV-EQPSLYWYFRTKRDLLTA 75 (88) T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CTHHHHTTCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH T ss_conf 999999999999859353659999999893-886999988999999999 No 170 >>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} (A:) Probab=34.91 E-value=30 Score=15.68 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=37.5 Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC-CH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 98589238999615889888899999833-98--99999999999737999999 Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK-DL--KLQEAYTEALQCRLDLLAEE 82 (185) Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k-de--EfreqYa~Are~qaD~laEE 82 (185) |...|.|...+++.-|+ +.+|+.+|.+. .| +.-.+.+++.....+.|++. T Consensus 10 R~~~gltq~~la~~~gv-s~~~i~~~E~g~~ps~~~l~~ia~~l~v~~~~l~~~ 62 (69) T 1r69_A 10 RIQLGLNQAELAQKVGT-TQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNG 62 (69) T ss_dssp HHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHHHHC T ss_pred HHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCC T ss_conf 99949999999785098-999999998799979999999999969889998289 No 171 >>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} (A:54-129) Probab=33.98 E-value=33 Score=15.40 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 99999999998589-2389996158898888999998339 Q gi|254781188|r 23 PELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 23 ~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .-....++..|.+| .++..|+-..|.-+.+.|.++.++. T Consensus 9 ~~Rl~~a~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~ 48 (76) T 1bl0_A 9 SRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNY 48 (76) T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 7889999988630378887872336999899999999999 No 172 >>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68) Probab=33.55 E-value=27 Score=16.02 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=31.3 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 9999985-892389996158898888999998339899999999 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185) +++..-+ .+-|++.||+.-|+ +.+|||+.....+++-..... T Consensus 15 ~l~~~~G~~~~t~~~Ia~~~gv-s~~~~y~~F~~k~~L~~~~~~ 57 (68) T 2vpr_A 15 ILLNEVGIEGLTTRKLAQKIGV-EQPTLYWHVKNKRALLDALAE 57 (68) T ss_dssp HHHHHHHHHHCCHHHHHHHHTC-CHHHHTTTCCSHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH T ss_conf 9999739351789999999791-987998888998989999999 No 173 >>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str} (A:) Probab=31.27 E-value=33 Score=15.46 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=30.5 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999998589238999615889888899999833 Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) .-.+|..|+.-.|++...+.-++ ++++++++|+. T Consensus 28 ~l~~f~~v~~~gs~s~AA~~l~i-sq~avs~~i~~ 61 (135) T 2ijl_A 28 KVELXQLIAETGSISAAGRAXDX-SYRRAWLLVDA 61 (135) T ss_dssp HHHHHHHHHHHSCHHHHHHHTTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 99999999998997899999489-88899999999 No 174 >>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:47-107) Probab=31.02 E-value=37 Score=15.08 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999999998589-238999615889888899999833 Q gi|254781188|r 23 PELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ......++..|.++ .|+..|+...|..+.++|.+..++ T Consensus 9 ~~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~~s~f~r~Fk~ 47 (61) T 2k9s_A 9 DQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKK 47 (61) T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 899999999886557519999999689989999999999 No 175 >>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} (A:) Probab=30.88 E-value=37 Score=15.07 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=30.4 Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 99999999998-5892389996158898888999998339 Q gi|254781188|r 23 PELFAGILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 23 ~Eiad~Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ..+.+.|.... ..|.|...+++.-|++ .+|+.+|.+.. T Consensus 12 ~~~~~~ik~~R~~~gltq~~lA~~~gis-~~~i~~~e~G~ 50 (74) T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLD-RSYVGGVERGQ 50 (74) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHTTC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHCCC T ss_conf 9999999999998099999999898969-99999998799 No 176 >>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} (A:) Probab=30.24 E-value=28 Score=15.92 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.0 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 23899961588988889999983 Q gi|254781188|r 37 KALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 37 eSLr~ICkd~gMPs~sTV~rWL~ 59 (185) =||.+|.|.-++| .||+.|-|- T Consensus 37 WSLaKlsKra~~P-MS~LRR~LT 58 (96) T 2obp_A 37 WSLPKIAKRAQLP-XSVLRRVLT 58 (96) T ss_dssp CBHHHHHHHHTCC-HHHHHHHHH T ss_pred CCHHHHHHHHCCC-HHHHHHHHH T ss_conf 3399998770796-799999999 No 177 >>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* (B:) Probab=29.92 E-value=38 Score=15.03 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=40.0 Q ss_pred CCCCHHHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHH Q ss_conf 445899999999-9985892389996158898888999998339----8999999999997379999 Q gi|254781188|r 19 IYYSPELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLA 80 (185) Q Consensus 19 i~Ys~Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~la 80 (185) ..+...+...|= .|...|.|...++..-|+ +.+|+.+|.+.. .+.-..++.+...-.+.++ T Consensus 7 ~~~~~~i~~~lk~~R~~~g~sq~elA~~~gi-s~~~is~~e~G~~~p~~~~l~~la~~lgv~~~~l~ 72 (88) T 2wiu_B 7 IYSPTQLANAMKLVRQQNGWTQSELAKKIGI-KQATISNFENNPDNTTLTTFFKILQSLELSMTLCD 72 (88) T ss_dssp BCSHHHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 3899999999999999859999999786399-89999999879999999999999999699408645 No 178 >>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} (A:) Probab=29.54 E-value=22 Score=16.60 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=21.7 Q ss_pred HHCCHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 858923899961588988889999983 Q gi|254781188|r 33 VANGKALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 33 IA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185) +..|.+|-.|++..|++ +..+.+|=. T Consensus 7 V~~GDTL~~IA~ky~v~-~~~l~~~N~ 32 (48) T 1e0g_A 7 VRKGDSLSSIAKRHGVN-IKDVMRWNS 32 (48) T ss_dssp ECTTCCHHHHHHHHTCC-HHHHHHHCS T ss_pred ECCCCCHHHHHHHHCCC-HHHHHHHCC T ss_conf 88998999999998949-999998749 No 179 >>1d5y_A ROB transcription factor; protein-DNA complex, ROB transcription factor; HET: DNA; 2.70A {Escherichia coli} (A:1-104) Probab=28.90 E-value=40 Score=14.85 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=46.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHH Q ss_conf 9999999998589238999615889888899999833989-999999999973799999986200230056403603789 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSK 102 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE-freqYa~Are~qaD~laEEILE~~a~~~ee~~~~~~~~~ 102 (185) .+.+-|...+.+.-++..++...|| |.+||.+-+++.-. .-.+|..- .+... +..++.....+-.++|..++++. T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~-S~~~l~r~f~~~~g~t~~~~~~~--~r~~~-~~~~l~~~~~si~eiA~~~Gf~~ 82 (104) T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGY-SKWHLQRMFKDVTGHAIGAYIRA--RRLSK-SAVALRLTARPILDIALQYRFDS 82 (104) T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSS-CHHHHHHHHHHHHSSCHHHHHHH--HHHHH-HHHHHHHCCCCHHHHHHHTTCSC T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHCCCHHHHHHH--HHHHH-HHHHHHCCCCCHHHHHHHHCCCC T ss_conf 9999999606899999999999893-99999999999889199999999--99999-99998767853779999859984 Q ss_pred HHHHHH Q ss_conf 979999 Q gi|254781188|r 103 MRDRKQ 108 (185) Q Consensus 103 lr~~~~ 108 (185) ..--.+ T Consensus 83 ~s~F~~ 88 (104) T 1d5y_A 83 QQTFTR 88 (104) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 799999 No 180 >>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:) Probab=28.88 E-value=40 Score=14.84 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHCCH-HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 999999999985892-38999615889888899999833 Q gi|254781188|r 23 PELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~rWL~k 60 (185) +..--.|+..|++|. +...|+..-|++ .+|+.+.|+. T Consensus 10 ~ptRl~Il~~L~~g~~tv~eLa~~lgis-~~tvS~HL~~ 47 (165) T 2vxz_A 10 LVRLRDILALLADGCKTTSLIQQRLGLS-HGRAKALIYV 47 (165) T ss_dssp HHHHHHHHHHHTTCCEEHHHHHHHHTCC-HHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCH-HHHHHHHHHH T ss_conf 9999999999975450899999982650-8999999999 No 181 >>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} (A:178-234) Probab=28.58 E-value=33 Score=15.46 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=24.3 Q ss_pred HHHHHHHHCCC--CCC----HHHHHHHHHCCHHHHHHHHHHH Q ss_conf 23899961588--988----8899999833989999999999 Q gi|254781188|r 37 KALGHVLRKVG--MPK----YSTFYRWIKKDLKLQEAYTEAL 72 (185) Q Consensus 37 eSLr~ICkd~g--MPs----~sTV~rWL~kdeEfreqYa~Ar 72 (185) +.|..+..+++ +++ +.++.+|+.-|++-|.+|.... T Consensus 9 ~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~d~~~R~~~~~~L 50 (57) T 3i3n_A 9 HLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEEL 50 (57) T ss_dssp HHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHH T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 999999689999989899999999999986938699999999 No 182 >>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:1-68) Probab=28.54 E-value=38 Score=15.06 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.3 Q ss_pred HHHHHCCHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 999858923899961588988889999983 Q gi|254781188|r 30 LDQVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 30 c~rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185) --|-..|.|-...+...|++ ++||-+|=+ T Consensus 37 ~lR~~~gLSQ~~fA~~lGVs-~~ti~~WE~ 65 (68) T 2ppx_A 37 IIRRALKLTQEEFSARYHIP-LGTLRDWEQ 65 (68) T ss_dssp HHHHHTTCCHHHHHHHHTCC-HHHHHHHHT T ss_pred HHHHHCCCCHHHHHHHHCCC-HHHHHHHHC T ss_conf 99999499999999996765-999999987 No 183 >>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A (A:103-184) Probab=28.39 E-value=28 Score=15.91 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 8999999999985892389996158898888999998339 Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ++.-..-|.-+.-.|.|...|+..-|++ .+||.+++..- T Consensus 35 ~~~~r~v~~l~~~~g~s~~eIA~~lgis-~~~v~~~l~ra 73 (82) T 2q1z_A 35 PEAQRALIERAFFGDLTHRELAAETGLP-LGTIKSRIRLA 73 (82) T ss_dssp CHHHHHHHHHHHHSCCSSCCSTTTCCCC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHH T ss_conf 6899889999999198999999998939-99999999999 No 184 >>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} (A:1-50) Probab=28.35 E-value=41 Score=14.78 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=22.3 Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHH Q ss_conf 9999985-89238999615889888899999 Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRW 57 (185) Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rW 57 (185) +++.+-+ ++-|++.||..-|+ +.+|||.. T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agi-sk~~~y~~ 48 (50) T 2g7s_A 19 TLIIRGGYNSFSYADISQVVGI-RNASIHHH 48 (50) T ss_dssp HHHHHHCGGGCCHHHHHHHHCC-CHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHH T ss_conf 9999739252889999998690-99999576 No 185 >>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A (A:614-739) Probab=28.02 E-value=27 Score=15.98 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=32.7 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHH--HCCC---CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999833989999999999973--7999999862--0023---005640360378997999988999998764665 Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCR--LDLLAEELLE--EPAP---TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQK 122 (185) Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~q--aD~laEEILE--~~a~---~~ee~~~~~~~~~lr~~~~~~~~w~l~k~~p~~ 122 (185) +|+..|.+..-.-.+.|+..++.- ....|.+|+. .|.| .|+++-- .+| |+++|++|-. T Consensus 53 ~~ia~wrk~~y~~~~ey~~~k~lL~ap~~da~~ll~~RfP~Pr~i~~~~g~S---------QAR----fLlsrlNPs~ 117 (126) T 2nut_A 53 ETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGS---------QAR----FLLSKVNPSQ 117 (126) T ss_dssp HHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEETTCS---------TTH----HHHHHCC--- T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---------HHH----HHHHHHCCCC T ss_conf 7357787534357823677999998789999999972789862899478983---------788----7776527653 No 186 >>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213) Probab=27.54 E-value=43 Score=14.69 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=32.7 Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH Q ss_conf 99999999985----8923899961588988889999983398999999 Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185) Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185) .+.+.-...++ +|-|++.||+.-|+ +.+|||++..+.+++-... T Consensus 17 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sK~~L~~a~ 64 (213) T 2qib_A 17 QLIGVALDLFSRRSPDEVSIDEIASAAGI-SRPLVYHYFPGKLSLYEAA 64 (213) T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH T ss_conf 99999999999729440679999999794-9879998829968999999 No 187 >>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:) Probab=26.85 E-value=44 Score=14.61 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.2 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 58999999999985892389996158898888999998339 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .++.--.-|.-+.-.|.|...|+..-|++ .+||..++..- T Consensus 16 L~~~~r~i~~l~~~~~~s~~eIA~~l~is-~~tV~~~l~ra 55 (70) T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCP-VGTIRSRVARA 55 (70) T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSC-HHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCC-HHHHHHHHHHH T ss_conf 99999999899999584799999997989-99999999999 No 188 >>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} (A:) Probab=26.61 E-value=44 Score=14.58 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=42.6 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCC------CCHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 5899999999998589238999615889------88889999983398999999999997 Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGM------PKYSTFYRWIKKDLKLQEAYTEALQC 74 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gM------Ps~sTV~rWL~kdeEfreqYa~Are~ 74 (185) -.+|+.+.|..+|+ .|..+|+..|+ | ..-+|..+..|+++.+.+.+|... T Consensus 79 s~~el~~~v~yQig---aL~~~a~~~g~~l~hVKP-HGALYn~~~~d~~la~ai~~ai~~ 134 (255) T 1v6t_A 79 TPEEARNYILYQVG---ALYAFAKAEGLELQHVKP-HGALYNAMVKEEDLARAVIEGILD 134 (255) T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHTTCCEEEECC-CHHHHHHHHHCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH---HHHHHHHHCCCEEEEEEH-HHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 87999999999999---999999984992467513-288887775489999999999996 No 189 >>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107) Probab=26.49 E-value=45 Score=14.57 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.2 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHH Q ss_conf 999998589238999615889888899999 Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRW 57 (185) Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rW 57 (185) +|...|..|+|-+.|.+..|+ |-.|+-|- T Consensus 27 ~Va~~L~~g~syreI~~~tGa-S~ATIsRv 55 (84) T 3frw_A 27 EVAKXLTDKRTYLDISEKTGA-STATISRV 55 (84) T ss_dssp HHHHHHHTTCCHHHHHHHHCC-CHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHCC-CHHHHHHH T ss_conf 999998869999999999698-75758999 No 190 >>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:) Probab=26.00 E-value=45 Score=14.51 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=43.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCC------CCHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 5676445899999999998589238999615889------88889999983398999999999997 Q gi|254781188|r 15 KKGCIYYSPELFAGILDQVANGKALGHVLRKVGM------PKYSTFYRWIKKDLKLQEAYTEALQC 74 (185) Q Consensus 15 Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gM------Ps~sTV~rWL~kdeEfreqYa~Are~ 74 (185) +.+.+ -.+|+.+.|..+|+ .|..+|+..|+ | ...+|..+..|+++.+.+.+|... T Consensus 74 r~m~~-~~~el~~~i~yQig---aL~~~~~~~g~~l~hVKP-HGALYn~~~~d~~lA~ai~~ai~~ 134 (250) T 2dfa_A 74 REMAL-SPEEVYADVLYQIG---ALSAFLKAEGLPLHHVKP-HGALYLKACRDRETARAIALAVKA 134 (250) T ss_dssp SCCCC-CHHHHHHHHHHHHH---HHHHHHHHTTCCCCCBCC-CHHHHHHHHHCHHHHHHHHHHHHH T ss_pred CCCCC-CHHHHHHHHHHHHH---HHHHHHHHCCCCCEEECH-HHHHHHHHHHCHHHHHHHHHHHHH T ss_conf 77789-98999999999999---999999983994032024-378775675378999999999984 No 191 >>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1} (A:) Probab=25.61 E-value=46 Score=14.46 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=30.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHH Q ss_conf 389996158898888999998339899999999999--7379999998 Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ--CRLDLLAEEL 83 (185) Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are--~qaD~laEEI 83 (185) .++.||+.+|+|+.. +--++.--+++-..|..-+. ...|.++|-| T Consensus 7 aikeicktdgipnik-wgmyiafgekllksylkmkagsassdmiaeyi 53 (82) T 3fbl_A 7 AIKEICKTDGIPNIK-WGMYIAFGEKLLKSYLKMKAGSASSDMIAEYI 53 (82) T ss_dssp HHHHHHHHTTCCGGG-HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 999998137998511-57889999999999997751674078999999 No 192 >>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:) Probab=25.50 E-value=46 Score=14.45 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=43.6 Q ss_pred CHHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999985--89238999615889888899999833-----9899999999999737999999 Q gi|254781188|r 22 SPELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKK-----DLKLQEAYTEALQCRLDLLAEE 82 (185) Q Consensus 22 s~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~k-----deEfreqYa~Are~qaD~laEE 82 (185) -..+++-|++... ...|++.|++.-|+ |.+||.|-+++ ..+|+....+....+...+-.+ T Consensus 23 e~~ia~yil~n~~~~~~~si~eiA~~~~v-S~sTI~Rf~kkLGy~gf~elk~~l~~~~~~~~~~~~~~ 89 (111) T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISALANS-SDAAVIRLCXSLGLKGFQDLXXRVAGDLAKPTFQGYRD 89 (111) T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTC-CHHHHHHHHHHTTCSSHHHHHHHHHHHHHSGGGCC--- T ss_pred HHHHHHHHHHCHHHHHHCCHHHHHHHHCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999959247655579999999798-99999999999667989999999999986225544578 No 193 >>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} (A:) Probab=25.26 E-value=47 Score=14.42 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=32.8 Q ss_pred HHHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHC---CHHHH--HHHHHHHHHH Q ss_conf 999999999-8589238999615889888899999833---98999--9999999973 Q gi|254781188|r 24 ELFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKK---DLKLQ--EAYTEALQCR 75 (185) Q Consensus 24 Eiad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~k---deEfr--eqYa~Are~q 75 (185) .+...|-.. -..|.|...+.+.-|++ .+|+.+|.+- .+.+. .+++.+.... T Consensus 18 ~i~~~lk~~r~~~gltq~elA~~~Gis-~~~is~~e~G~~~~p~~~~l~~la~~l~v~ 74 (83) T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVT-QPRVSDLXRGKIDLFSLESLIDXITSIGLK 74 (83) T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHTTCGGGCCHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCC-HHHHHHHHCCCCCCCCHHHHHHHHHHHCCC T ss_conf 999999999999699889999998557-635558862421231158999999994996 No 194 >>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83) Probab=25.25 E-value=47 Score=14.42 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.1 Q ss_pred CHHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 899999999998589-238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) +++.--.|+..|++| .+...|....||| .+|+...|+. T Consensus 9 s~p~Rl~IL~~L~~~~~~~~eia~~l~is-~~tvS~HL~~ 47 (74) T 1uly_A 9 LEDTRRKILKLLRNKEXTISQLSEILGKT-PQTIYHHIEK 47 (74) T ss_dssp HSHHHHHHHHHHTTCCBCHHHHHHHHTCC-HHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 99999999999982996899999998909-9999999999 No 195 >>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76) Probab=24.99 E-value=47 Score=14.39 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=30.8 Q ss_pred CCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 58999999999985892--------38999615889888899999833 Q gi|254781188|r 21 YSPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185) ....+++.|.+.|..|. |.+.+|+..|+ |..||.+-+.. T Consensus 10 ~~~~i~~~i~~~I~~g~~~~g~~lpse~~La~~~~v-Sr~tvr~al~~ 56 (76) T 3edp_A 10 LFEVIASKIKDSINRDEYKTGXLXPNETALQEIYSS-SRTTIRRAVDL 56 (76) T ss_dssp HHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTC-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999999999984999992999289999999794-99999999999 No 196 >>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} (A:627-734) Probab=24.24 E-value=27 Score=16.06 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=32.3 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHH--HCCC---CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999833989999999999973--7999999862--0023---00564036037899799998899999876466 Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCR--LDLLAEELLE--EPAP---TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121 (185) Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~q--aD~laEEILE--~~a~---~~ee~~~~~~~~~lr~~~~~~~~w~l~k~~p~ 121 (185) +|+..|.+..-.-.+.|+..++.- ....|.+|+. .|.| .|+++-- .+| |+++|++|- T Consensus 42 ~~ia~W~k~~y~~~~~y~~~k~lL~ap~~da~~il~~RfP~Pr~i~~~~~~S---------QAR----fL~srlnPs 105 (108) T 1m2o_A 42 EQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFIDTEAGGS---------QAR----FLLSKLNPS 105 (108) T ss_dssp HHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHHHHHTCSSCCEEEEEETTCG---------GGH----HHHTTSBCC T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---------HHH----HHHHHHCCC T ss_conf 7445677526468933888999998778899999874378762899678986---------898----999874887 No 197 >>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:1-65) Probab=24.17 E-value=49 Score=14.29 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHCCHHHHH----HHHC--CCCCCHHHHHHHHHC Q ss_conf 999999999858923899----9615--889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGKALGH----VLRK--VGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~----ICkd--~gMPs~sTV~rWL~k 60 (185) ++-.-|+-..-.|.+... +|+. .+.|+++||..|... T Consensus 10 ~lR~~ilyef~~g~~~~ea~~~~c~~~G~~~~~~~~~~~Wf~r 52 (65) T 3hot_A 10 QTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQR 52 (65) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 8999999999859989999999999846688878899999999 No 198 >>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82) Probab=24.17 E-value=49 Score=14.29 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=29.3 Q ss_pred CCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHH Q ss_conf 58999999999985892--------3899961588988889999983 Q gi|254781188|r 21 YSPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 21 Ys~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~ 59 (185) -...+++.|.+.|.+|. |.+.+|+..|+ |..||..-+. T Consensus 11 ~~~~v~~~i~~~I~~g~~~~G~~LPs~~~La~~~~v-Sr~tvr~Al~ 56 (82) T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGI-SRMTVRQALS 56 (82) T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH T ss_conf 899999999999982999993999369999999796-9999999999 No 199 >>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} (A:) Probab=24.11 E-value=48 Score=14.33 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=5.6 Q ss_pred HHHHHHCCCCC Q ss_conf 89996158898 Q gi|254781188|r 39 LGHVLRKVGMP 49 (185) Q Consensus 39 Lr~ICkd~gMP 49 (185) |..|..|..+| T Consensus 19 L~~I~~D~sVP 29 (89) T 2qsb_A 19 LDELSQDITVP 29 (89) T ss_dssp HHHHHTCTTSC T ss_pred HHHHHCCCCCC T ss_conf 99985389877 No 200 >>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53) Probab=24.11 E-value=49 Score=14.28 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=28.7 Q ss_pred HHHHHHHHHHH-CC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999999985-89-238999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVA-NG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA-~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ++-..|+..|. +| .|.+.|.+..|+ |.+||++.+++ T Consensus 3 ~~D~~IL~~L~~d~r~~~~elA~~lgv-S~~tv~~ri~~ 40 (53) T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRI-PKATLSYRIKK 40 (53) T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 899999999998599999999999891-99999999999 No 201 >>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} (A:) Probab=23.93 E-value=50 Score=14.26 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=33.0 Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--HH--HHHHHHHHHHHHHHHHHH Q ss_conf 985892389996158898888999998339--89--999999999973799999 Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD--LK--LQEAYTEALQCRLDLLAE 81 (185) Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--eE--freqYa~Are~qaD~laE 81 (185) |...|.|...++..-|+ +.+|+.+|-+.. |. .-.+.+.+...-.+.|+. T Consensus 10 R~~~gltq~eLA~~~gi-s~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~l~~ 62 (158) T 2p5t_A 10 RKTHDLTQLEFARIVGI-SRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVG 62 (158) T ss_dssp ------------------------------------------------------ T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC T ss_conf 99849999999999796-999999998699899999999999994998999828 No 202 >>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=23.64 E-value=41 Score=14.82 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.3 Q ss_pred HHCCHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 858923899961588988889999983 Q gi|254781188|r 33 VANGKALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 33 IA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185) +-.|++|-.|++..|++ +..+.+|=. T Consensus 20 V~~GDTL~~IA~~y~v~-~~~l~~~N~ 45 (77) T 2djp_A 20 LEPGDTLAGLALKYGVT-MEQIKRANR 45 (77) T ss_dssp CCTTCCHHHHHHHHTCC-HHHHHHHHT T ss_pred ECCCCCHHHHHHHHHHH-HHHHHHHHC T ss_conf 89999999999998656-999998547 No 203 >>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* (A:107-191) Probab=23.33 E-value=51 Score=14.18 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=34.9 Q ss_pred HHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 999858923899961588988889999983398999--99999999737999999862 Q gi|254781188|r 30 LDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ--EAYTEALQCRLDLLAEELLE 85 (185) Q Consensus 30 c~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfr--eqYa~Are~qaD~laEEILE 85 (185) -+-|-.|.....--+..||+ +|.++.+||++. +-+.+|.....-.+.+.|++ T Consensus 27 ~~~vr~g~~~t~Fe~ahG~~----~~ey~~~dp~~~~~~~Fn~aM~~~S~~~~~~i~~ 80 (85) T 1zg3_A 27 KKWFNEDKEQTLFECATGES----FWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQE 80 (85) T ss_dssp HHHHHCSCCCCHHHHHHSSC----HHHHHTSGGGHHHHHHHHHHHHHHHHTHHHHHHH T ss_pred HHHHHCCCCCCHHHHCCCCC----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99984589765044224010----7999873931669999999987615555889987 No 204 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:1-45) Probab=23.31 E-value=51 Score=14.18 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=25.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCH----HHHHHHHHH Q ss_conf 3899961588988889999983398----999999999 Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKKDL----KLQEAYTEA 71 (185) Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~kde----EfreqYa~A 71 (185) +|..|.+.-|+ |.+||.+-|+..+ +.+++..+| T Consensus 2 Ti~diA~~agv-S~~TVSr~ln~~~~Vs~~tr~rV~~~ 38 (45) T 1qpz_A 2 TIKDVAKRANV-STTTVSHVINKTRFVAEETRNAVWAA 38 (45) T ss_dssp CHHHHHHHHTS-CHHHHHHHHHTCSCCCHHHHHHHHHH T ss_pred CHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 68999999895-99999999689799999999999999 No 205 >>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135) Probab=23.23 E-value=51 Score=14.17 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHCCH---HHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999999985892---38999615889888899999833 Q gi|254781188|r 24 ELFAGILDQVANGK---ALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 24 Eiad~Ic~rIA~Ge---SLr~ICkd~gMPs~sTV~rWL~k 60 (185) .+...++...-.|. |+..||+.-|| |-+||.++|+. T Consensus 21 ~vl~~l~~~~~~g~~~pS~~~iA~~~g~-s~~tV~~~l~~ 59 (120) T 2v79_A 21 ILLLKIKMHLEKGSYFPTPNQLQEGMSI-SVEECTNRLRM 59 (120) T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHTTSSS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 9999999998769999899999999698-99999999999 No 206 >>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A (A:) Probab=23.07 E-value=51 Score=14.15 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=39.0 Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985-8923899961588988889999983398999999999997379999998 Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) +..+|..-+ .|-|++.||+.-|+ +.+|||++..+.+++-.........+......+. T Consensus 23 a~~l~~~~G~~~~ti~~Ia~~aGv-s~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~ 80 (220) T 3lhq_A 23 ALRLFSQQGVSATSLAEIANAAGV-TRGAIYWHFKNKSDLFSEIWELSESNIGELEIEY 80 (220) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999849140779999998588-9334776189999999999999999999999999 No 207 >>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} (A:) Probab=22.56 E-value=53 Score=14.08 Aligned_cols=32 Identities=6% Similarity=0.212 Sum_probs=24.8 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999983398999999999997379999998 Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185) Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185) -.|..||+.+++.+.+|..-+..-+..+..++ T Consensus 118 l~FRDyLr~~p~~~~~Y~~lK~~la~~~~~d~ 149 (173) T 2nrk_A 118 LAFRNYLRENPAIATTYGTLKKQLAQAHPDSI 149 (173) T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTTCSSCH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999986699999999999999998789988 No 208 >>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} (A:) Probab=22.51 E-value=53 Score=14.08 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=32.5 Q ss_pred CHHHHHHHHH-HHHCCHHHHHHHHCCCCC-CHHHHHHHHHCC--HHHHHHHH Q ss_conf 8999999999-985892389996158898-888999998339--89999999 Q gi|254781188|r 22 SPELFAGILD-QVANGKALGHVLRKVGMP-KYSTFYRWIKKD--LKLQEAYT 69 (185) Q Consensus 22 s~Eiad~Ic~-rIA~GeSLr~ICkd~gMP-s~sTV~rWL~kd--eEfreqYa 69 (185) ...+.+.|-. |...|.|...+++.-|++ +.+|+.+|.+.. +.+..-+. T Consensus 6 ~~~ig~~ik~~R~~~gltq~~lA~~~G~~vs~~~is~~E~g~~~p~~~~l~~ 57 (71) T 2ewt_A 6 AKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAE 57 (71) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999999999999862638999999778738999999997001007889999 No 209 >>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structural genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} (A:) Probab=22.40 E-value=52 Score=14.11 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 999999999985892389996158898888999998 Q gi|254781188|r 23 PELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWI 58 (185) Q Consensus 23 ~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL 58 (185) ++...+++.. |..|..|..+| +.+.+-. T Consensus 13 ee~ik~~~~~------L~~I~~D~sVP--RNIRraa 40 (94) T 2qzg_A 13 ADKLKNISSX------LEEIVEDTTVP--RNIRAAA 40 (94) T ss_dssp HHHHHHHHHH------HHHHHTCTTSC--HHHHHHH T ss_pred HHHHHHHHHH------HHHHHCCCCCC--HHHHHHH T ss_conf 9999999999------99985489888--6899999 No 210 >>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131) Probab=22.07 E-value=54 Score=14.02 Aligned_cols=37 Identities=5% Similarity=0.143 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999999998589-238999615889888899999833 Q gi|254781188|r 23 PELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 23 ~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ++.--.|+..|++| .+...|.+..|++ .+|+...|+. T Consensus 57 ~~~R~~Il~~L~~~~~~~~eLa~~l~is-~~tvS~HL~~ 94 (131) T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPAS-RSAISQHLRV 94 (131) T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSC-HHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 9999999999982991799999998878-7789998754 No 211 >>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:1-46) Probab=22.02 E-value=54 Score=14.01 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHH----HHHHHHHH Q ss_conf 38999615889888899999833989----99999999 Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKKDLK----LQEAYTEA 71 (185) Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~kdeE----freqYa~A 71 (185) +|+.|.+.-|+ |.+||.+-|+..+. .+++..+| T Consensus 4 ti~dIA~~agv-S~~TVSr~ln~~~~vs~~tr~~I~~~ 40 (46) T 2hsg_A 4 TIYDVAREASV-SMATVSRVVNGNPNVKPSTRKKVLET 40 (46) T ss_dssp CHHHHHHHTTS-CHHHHHHHHTTCTTSCHHHHHHHHHH T ss_pred CHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 89999999896-99999999789599999999999999 No 212 >>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:1-66,A:321-496) Probab=21.51 E-value=33 Score=15.46 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=19.1 Q ss_pred CCCCCCCHHHHH--------HHHHHHHCCHHHHH---HHHCCCCC Q ss_conf 676445899999--------99999858923899---96158898 Q gi|254781188|r 16 KGCIYYSPELFA--------GILDQVANGKALGH---VLRKVGMP 49 (185) Q Consensus 16 k~~i~Ys~Eiad--------~Ic~rIA~GeSLr~---ICkd~gMP 49 (185) +++++-+.|-|. ++|+|+++|+|--- -|.|.-+| T Consensus 36 ksnifanneawrqemlkqdpeffnrlangqspeilwigcadsrvp 80 (242) T 1ddz_A 36 KSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEILWIGCADSRVP 80 (242) T ss_dssp SSHHHHHHHHHHHHHHHHCTTHHHHHHTCCCCSEEEEEETTCSSC T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCC T ss_conf 999999999999752444979999863799997699985377989 No 213 >>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:) Probab=21.26 E-value=56 Score=13.91 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=28.8 Q ss_pred CHHHHHHHHHHH----HCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 899999999998----5892389996158898888999998339 Q gi|254781188|r 22 SPELFAGILDQV----ANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 22 s~Eiad~Ic~rI----A~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) ++.--.-|.-+. ..|.|+..|...-|+| .+||.+++..- T Consensus 20 ~~~~r~vl~lry~l~~~e~~s~~EIA~~lgis-~~~V~~~~~ra 62 (87) T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT-RERIRQIEVKA 62 (87) T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC-HHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHH T ss_conf 99999999997177899956699999996988-99999999999 No 214 >>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423) Probab=21.10 E-value=56 Score=13.89 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.4 Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 5892389996158898888999998339 Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185) Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185) .+|.|...|+...|++ .+||..++..- T Consensus 43 ~e~~s~~eIA~~lgis-~~tV~~~~~ra 69 (88) T 2a6h_F 43 GREHTLEEVGAFFGVT-RERIRQIENKA 69 (88) T ss_dssp C-----CHHHHSSSSC-HHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHH T ss_conf 9860399999998969-99999999999 No 215 >>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=21.08 E-value=56 Score=13.89 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999876466534342034433134678899999986 Q gi|254781188|r 113 FLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHY 148 (185) Q Consensus 113 w~l~k~~p~~yg~rvs~e~~h~~~~~~~~~~~~~~~ 148 (185) =+|...++..|+-.|++++=..|.++-+-++++... T Consensus 62 dlLv~~y~~~~A~~vti~il~~in~~~Lae~l~~e~ 97 (115) T 2do9_A 62 SKLISMYGAQEAVRVVSRSLLAMNLMELVDYLNQVC 97 (115) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHCC T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 999998688899999999999839299999999999 No 216 >>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79) Probab=20.98 E-value=57 Score=13.87 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=30.8 Q ss_pred CHHHHHHHHHHHH--CC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999999985--89-238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVA--NG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA--~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ..+-...|+..|. .| -|+..++...|+ |.+|+|+-|.. T Consensus 19 ~~~R~~~Il~~L~~~~~~vt~~eLa~~l~V-S~~Ti~rdl~~ 59 (79) T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSV-SRQVIVQDIAY 59 (79) T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS-CHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999999999986997769999999797-99999999999 No 217 >>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:) Probab=20.84 E-value=57 Score=13.86 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.4 Q ss_pred CHHHHHHHHHHHHC-CHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 89999999999858-9238999615889888899999833 Q gi|254781188|r 22 SPELFAGILDQVAN-GKALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 22 s~Eiad~Ic~rIA~-GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185) ++..--.|+..|++ +.+...|+..-|++ .+|+.+.|+. T Consensus 24 s~~~Rl~Il~~L~~~~~~~~ela~~l~is-~stvs~HL~~ 62 (106) T 1r1u_A 24 GDYNRIRIMELLSVSEASVGHISHQLNLS-QSNVSHQLKL 62 (106) T ss_dssp CSHHHHHHHHHHHHCCBCHHHHHHHHTCC-HHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHH T ss_conf 89999999999983994699999887658-6689999999 No 218 >>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76) Probab=20.80 E-value=57 Score=13.85 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 999999999858923899961588988889999983 Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185) Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185) |.+..|-..+..|.|...|++..|+ +.++|.+.|+ T Consensus 40 e~a~~~~~l~~~g~s~~~iA~~lg~-s~~~V~~~l~ 74 (76) T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIGK-SPAFITQHVT 74 (76) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHG T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHH T ss_conf 9999999999838989999999888-9999999999 No 219 >>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82) Probab=20.28 E-value=58 Score=13.78 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=27.4 Q ss_pred HHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 99999998589-238999615889888899999833 Q gi|254781188|r 26 FAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKK 60 (185) Q Consensus 26 ad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~k 60 (185) --.|+..|++| .+...|.+..|+ +++|+...|+. T Consensus 27 R~~Il~~L~~~~~~~~ela~~l~i-s~~tvs~HL~~ 61 (82) T 2kko_A 27 RLQILDLLAQGERAVEAIATATGM-NLTTASANLQA 61 (82) T ss_dssp THHHHHHHTTCCEEHHHHHHHHTC-CHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH T ss_conf 999999998199789999999890-99999999999 No 220 >>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} (A:1-58) Probab=20.10 E-value=59 Score=13.75 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHH Q ss_conf 999999999985----89238999615889888899999 Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRW 57 (185) Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rW 57 (185) ++|.+.-.+.++ .|-|++.||..-|+ +.+|||.. T Consensus 19 ~~Il~aA~~lf~~~G~~~~ti~~Ia~~agv-s~~~lY~h 56 (58) T 2oi8_A 19 AEIKDHAWEQIATAGASALSLNAIAKRXGX-SGPALYRY 56 (58) T ss_dssp HHHHHHHHHHHHHHCTTSCCHHHHHHHTTC-CHHHHHTT T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHH T ss_conf 999999999999829453889999999688-72048675 No 221 >>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:1-95) Probab=20.00 E-value=59 Score=13.74 Aligned_cols=29 Identities=31% Similarity=0.639 Sum_probs=24.1 Q ss_pred HHCCHHHHHHHHCCCCCCHHHHHHHHHCCH Q ss_conf 858923899961588988889999983398 Q gi|254781188|r 33 VANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185) Q Consensus 33 IA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185) +..|.+|-.|++..|+| ...+.+|.+.+. T Consensus 12 V~~GDTL~~Ia~~~gv~-~~~l~~~~~~~~ 40 (95) T 2gu1_A 12 VKVGDTLSGIFAQLGVP-YSILQKILSVDL 40 (95) T ss_dssp CCTTCCHHHHHHHTTCC-HHHHHHHHHHGG T ss_pred ECCCCCHHHHHHHCCCC-HHHHHHHHHHCC T ss_conf 89998499999885989-999999997360 Done!