HHsearch results for GI: 254781188 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=93.15  E-value=0.09  Score=31.55  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf             589999999999858923899961588988889999983398
Q gi|254781188|r   21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL   62 (185)
Q Consensus        21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde   62 (185)
                      +|++.-..|+....+|.|.+.|++..|+ +.+||++|++...
T Consensus         7 lt~~~R~~I~~l~~~G~s~~~IAk~lg~-s~stV~r~lk~~~   47 (141)
T 1u78_A            7 LSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPV   47 (141)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSGG
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHC
T ss_conf             9999999999999979999999999895-7899999999710