HHSEARCH alignment of GI: 254781188 and SCOP domain: d1ijwc_

Alignment
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=96.76  E-value=0.00064  Score=44.31  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf             24656764458999999999985892389996158898888999998339
Q gi|254781188|r   12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD   61 (185)
Q Consensus        12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd   61 (185)
                      ||.++    .|++-+..+-..+++|+|..+|++..|+ |.+|+|+|+-.+
T Consensus         1 GR~~~----lt~~q~~~a~~l~~~G~s~~~iA~~~gV-Sr~TiYry~pa~   45 (47)
T d1ijwc_           1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPAS   45 (47)
T ss_dssp             CCCCS----SCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHSCST
T ss_pred             CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCC
T ss_conf             98885----9999999999999889979999999796-999998557755


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic