Query gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 92 out of 94
Neff 3.5
Searched_HMMs 13730
Date Wed Jun 1 11:43:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781188.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 96.8 0.00064 4.7E-08 44.3 4.1 45 12-61 1-45 (47)
2 d2jn6a1 a.4.1.19 (A:1-89) Unch 95.5 0.0054 3.9E-07 38.2 3.7 40 20-60 5-46 (89)
3 d1pdnc_ a.4.1.5 (C:) Paired pr 93.6 0.034 2.5E-06 32.8 3.9 42 21-63 17-58 (123)
4 d1k78a1 a.4.1.5 (A:19-81) Pax- 92.7 0.054 3.9E-06 31.5 3.8 41 21-62 15-55 (63)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 90.9 0.19 1.4E-05 27.8 5.0 49 21-70 8-58 (66)
6 d2gfna1 a.4.1.9 (A:4-80) Proba 88.6 0.54 3.9E-05 24.8 5.8 59 27-86 16-75 (77)
7 d1t56a1 a.4.1.9 (A:22-94) Ethr 88.1 0.46 3.4E-05 25.2 5.2 57 28-85 14-71 (73)
8 d1ui5a1 a.4.1.9 (A:5-75) A-fac 88.1 0.57 4.1E-05 24.6 5.6 43 27-70 15-58 (71)
9 d1vi0a1 a.4.1.9 (A:6-77) Hypot 84.3 1.2 8.8E-05 22.4 5.7 45 27-72 11-56 (72)
10 d2ezia_ a.4.1.2 (A:) Transposa 83.2 0.68 4.9E-05 24.1 4.1 42 20-61 7-59 (75)
11 d2fd5a1 a.4.1.9 (A:1-76) Proba 82.2 0.58 4.2E-05 24.5 3.4 43 25-68 16-58 (76)
12 d2id6a1 a.4.1.9 (A:1-75) Trans 81.8 1.6 0.00012 21.6 5.5 52 24-76 7-62 (75)
13 d1v7ba1 a.4.1.9 (A:1-74) Trans 81.6 1.4 0.0001 22.0 5.2 45 35-83 23-67 (74)
14 d1rkta1 a.4.1.9 (A:2-82) Hypot 81.6 1.2 8.8E-05 22.4 4.9 44 26-70 20-64 (81)
15 d3c07a1 a.4.1.9 (A:15-89) Puta 79.9 1.1 8.3E-05 22.6 4.2 46 28-74 16-62 (75)
16 d2fbqa1 a.4.1.9 (A:2-80) Trans 78.5 2.2 0.00016 20.7 6.0 33 35-68 23-55 (79)
17 d1sgma1 a.4.1.9 (A:5-77) Putat 78.3 1.8 0.00013 21.3 4.8 57 27-84 12-70 (73)
18 d2o7ta1 a.4.1.9 (A:1-78) Trans 76.7 2.5 0.00018 20.4 5.4 43 26-69 16-59 (78)
19 d2gena1 a.4.1.9 (A:6-75) Proba 76.7 2.5 0.00018 20.4 6.3 43 28-71 11-54 (70)
20 d2i10a1 a.4.1.9 (A:10-78) Puta 76.4 2.4 0.00017 20.5 5.0 44 25-69 8-52 (69)
21 d1gdta1 a.4.1.2 (A:141-183) ga 73.6 1.5 0.00011 21.7 3.5 34 27-61 9-42 (43)
22 d2np5a1 a.4.1.9 (A:9-77) Trans 70.1 3.5 0.00025 19.3 4.9 49 31-83 16-64 (69)
23 d2hkua1 a.4.1.9 (A:18-87) Puta 69.8 3.5 0.00026 19.3 6.6 43 25-68 9-51 (70)
24 d1a04a1 a.4.6.2 (A:150-216) Ni 68.2 1.9 0.00014 21.1 3.0 34 26-60 11-44 (67)
25 d1yioa1 a.4.6.2 (A:131-200) Re 67.9 1.8 0.00013 21.2 2.8 35 25-60 16-50 (70)
26 d1l3la1 a.4.6.2 (A:170-234) Qu 67.7 1.9 0.00013 21.2 2.8 35 25-60 8-42 (65)
27 d2g7sa1 a.4.1.9 (A:3-76) Putat 66.9 4.1 0.00029 18.9 5.4 44 26-70 14-57 (74)
28 d2b5aa1 a.35.1.3 (A:1-77) Regu 65.7 4.3 0.00031 18.8 4.5 59 24-83 10-73 (77)
29 d1fsea_ a.4.6.2 (A:) Germinati 65.6 2.1 0.00015 20.8 2.8 36 24-60 7-42 (67)
30 d2hyja1 a.4.1.9 (A:8-82) Putat 65.6 3.9 0.00028 19.0 4.2 54 28-85 17-70 (75)
31 d1jt6a1 a.4.1.9 (A:2-72) Multi 65.2 4.4 0.00032 18.7 7.2 34 34-68 19-52 (71)
32 d2oi8a1 a.4.1.9 (A:8-86) Putat 64.4 4.5 0.00033 18.6 5.7 46 34-83 27-72 (79)
33 d1zk8a1 a.4.1.9 (A:6-77) Trans 63.3 4.3 0.00031 18.7 4.0 42 28-70 14-56 (72)
34 d1pb6a1 a.4.1.9 (A:14-85) Hypo 60.6 5.3 0.00038 18.1 5.4 38 28-66 15-53 (72)
35 d2g3ba1 a.4.1.9 (A:2-73) Putat 59.8 5.4 0.00039 18.1 4.0 33 35-68 21-53 (72)
36 d2g7ga1 a.4.1.9 (A:9-73) Putat 59.1 3.1 0.00023 19.7 2.7 42 24-67 8-49 (65)
37 d1t33a1 a.4.1.9 (A:1-88) Putat 58.1 5.8 0.00042 17.9 5.2 41 25-67 20-61 (88)
38 d1fp1d2 c.66.1.12 (D:129-372) 57.7 5.9 0.00043 17.8 4.2 33 53-85 42-74 (244)
39 d3bwga1 a.4.5.6 (A:5-82) Trans 57.4 4.6 0.00034 18.5 3.3 36 24-60 2-45 (78)
40 d2ao9a1 a.4.1.17 (A:13-132) Ph 57.2 2.6 0.00019 20.2 2.1 45 21-66 14-65 (120)
41 d1kyza2 c.66.1.12 (A:120-362) 56.5 6.2 0.00045 17.7 4.3 54 26-85 21-74 (243)
42 d1p4wa_ a.4.6.2 (A:) Transcrip 54.6 3.5 0.00025 19.4 2.3 38 21-60 23-60 (87)
43 d2vkva1 a.4.1.9 (A:6-67) Tetra 54.3 6.3 0.00046 17.7 3.6 41 27-68 9-50 (62)
44 d2fq4a1 a.4.1.9 (A:9-77) Trans 53.7 4.3 0.00031 18.7 2.7 39 25-64 13-51 (69)
45 d1fp2a2 c.66.1.12 (A:109-352) 53.4 6.9 0.0005 17.4 4.0 33 53-85 41-73 (244)
46 d2d6ya1 a.4.1.9 (A:7-74) Putat 53.2 6.9 0.00051 17.3 5.4 40 27-67 12-52 (68)
47 d1rr7a_ a.4.1.14 (A:) Middle o 51.7 4.1 0.0003 18.9 2.3 32 27-60 58-89 (94)
48 d1mkma1 a.4.5.33 (A:1-75) Tran 51.6 7.3 0.00054 17.2 4.8 36 24-60 5-43 (75)
49 d2np3a1 a.4.1.9 (A:35-99) Puta 51.4 3.6 0.00027 19.2 2.0 54 27-85 6-60 (65)
50 d1v4ra1 a.4.5.6 (A:1-100) Tran 50.5 6.7 0.00049 17.5 3.2 38 22-60 11-56 (100)
51 d2ezla_ a.4.1.2 (A:) Ibeta sub 49.7 6.1 0.00044 17.7 2.9 39 24-63 37-79 (99)
52 d1biaa1 a.4.5.1 (A:1-63) Bioti 49.5 7.9 0.00058 17.0 3.5 36 24-60 5-42 (63)
53 d2id3a1 a.4.1.9 (A:13-80) Puta 49.3 7.9 0.00058 17.0 4.3 39 26-65 16-54 (68)
54 d1zyba2 b.82.3.2 (A:1-147) Pro 48.8 8.1 0.00059 16.9 3.5 40 46-86 108-147 (147)
55 d1jhfa1 a.4.5.2 (A:2-72) LexA 48.8 8.1 0.00059 16.9 4.0 39 22-60 7-48 (71)
56 d1umqa_ a.4.1.12 (A:) Photosyn 48.7 8.1 0.00059 16.9 3.4 35 27-62 23-58 (60)
57 d1bl0a2 a.4.1.8 (A:63-124) Mar 47.7 8.4 0.00061 16.8 3.5 36 26-61 3-39 (62)
58 d1utxa_ a.35.1.3 (A:) Putative 44.6 6.4 0.00047 17.6 2.4 48 31-79 9-60 (66)
59 d2g7la1 a.4.1.9 (A:16-83) Puta 44.2 8 0.00059 16.9 2.9 38 28-66 15-53 (68)
60 d1z0xa1 a.4.1.9 (A:4-71) Trans 44.0 9.6 0.0007 16.4 3.7 44 24-68 6-54 (68)
61 d2hs5a1 a.4.5.6 (A:25-93) Puta 41.0 10 0.00074 16.2 3.0 37 22-59 4-47 (69)
62 d1b0na2 a.35.1.3 (A:1-68) SinR 40.4 11 0.00079 16.1 3.4 49 32-81 10-63 (68)
63 d1r69a_ a.35.1.2 (A:) 434 C1 r 40.3 9 0.00066 16.6 2.6 50 31-81 9-61 (63)
64 d2iu5a1 a.4.1.9 (A:1-71) Trans 38.7 2.6 0.00019 20.2 -0.3 34 35-69 25-58 (71)
65 d2r1jl1 a.35.1.2 (L:3-68) P22 37.2 12 0.00088 15.7 3.2 47 32-79 12-62 (66)
66 d1tw3a2 c.66.1.12 (A:99-351) C 36.0 6.2 0.00045 17.7 1.2 52 28-85 23-74 (253)
67 d1hw1a1 a.4.5.6 (A:5-78) Fatty 34.5 13 0.00097 15.5 3.7 36 23-59 6-49 (74)
68 d2croa_ a.35.1.2 (A:) cro 434 33.4 13 0.00092 15.6 2.5 48 32-80 12-62 (65)
69 d1bl0a1 a.4.1.8 (A:9-62) MarA 32.6 13 0.00096 15.5 2.5 38 23-61 6-43 (54)
70 d1y9qa1 a.35.1.8 (A:4-82) Prob 32.1 10 0.00076 16.2 1.9 57 22-79 6-67 (79)
71 d2fx0a1 a.4.1.9 (A:4-76) Hemol 32.0 15 0.0011 15.2 4.3 37 31-68 19-55 (73)
72 d1b9ma1 a.4.5.8 (A:-1-126) N-t 31.9 9.9 0.00072 16.3 1.7 42 19-62 16-57 (127)
73 d1g2ha_ a.4.1.12 (A:) Transcri 31.5 15 0.0011 15.1 3.1 38 20-61 20-57 (61)
74 d1musa_ c.55.3.4 (A:) Transpos 30.9 15 0.0011 15.1 3.5 33 28-61 30-64 (474)
75 d1y7ya1 a.35.1.3 (A:5-73) Rest 29.7 12 0.00085 15.8 1.8 46 25-71 10-58 (69)
76 d2obpa1 a.4.5.71 (A:12-92) Put 29.6 12 0.00086 15.8 1.8 22 37-59 25-46 (81)
77 d1qzza2 c.66.1.12 (A:102-357) 28.3 8.2 0.00059 16.9 0.8 33 53-85 43-75 (256)
78 d2ppxa1 a.35.1.3 (A:30-91) Unc 27.5 16 0.0012 14.9 2.2 30 31-61 7-36 (62)
79 d1jhga_ a.4.12.1 (A:) Trp repr 26.9 17 0.0012 14.8 2.2 26 29-55 50-76 (101)
80 d1or7a1 a.4.13.2 (A:120-187) S 25.7 19 0.0014 14.5 4.6 39 22-61 20-58 (68)
81 d2nrka1 d.218.1.14 (A:4-170) H 25.2 19 0.0014 14.4 3.5 29 52-80 112-140 (167)
82 d2icta1 a.35.1.3 (A:8-94) Anti 24.7 19 0.0014 14.4 3.5 47 34-81 12-62 (87)
83 d1lmb3_ a.35.1.2 (3:) lambda C 23.9 18 0.0013 14.6 1.8 53 32-85 21-77 (87)
84 d1rp3a2 a.4.13.2 (A:164-234) S 23.6 20 0.0015 14.2 4.6 40 21-61 22-61 (71)
85 d2qsba1 a.29.14.1 (A:2-86) Unc 21.8 22 0.0016 14.0 2.1 45 39-85 15-62 (85)
86 d2esna1 a.4.5.37 (A:3-91) Prob 21.5 18 0.0013 14.6 1.5 34 28-62 12-45 (89)
87 d2auwa1 a.35.1.10 (A:88-154) H 21.2 23 0.0017 13.9 2.2 30 31-61 9-38 (67)
88 d2qzga1 a.29.14.1 (A:4-91) Unc 20.8 23 0.0017 13.9 2.0 40 39-85 17-64 (88)
No 1
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=96.76 E-value=0.00064 Score=44.31 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 24656764458999999999985892389996158898888999998339
Q gi|254781188|r 12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
||.++ .|++-+..+-..+++|+|..+|++..|+ |.+|+|+|+-.+
T Consensus 1 GR~~~----lt~~q~~~a~~l~~~G~s~~~iA~~~gV-Sr~TiYry~pa~ 45 (47)
T d1ijwc_ 1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPAS 45 (47)
T ss_dssp CCCCS----SCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHSCST
T ss_pred CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCC
T ss_conf 98885----9999999999999889979999999796-999998557755
No 2
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=95.55 E-value=0.0054 Score=38.16 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 458999999999985--89238999615889888899999833
Q gi|254781188|r 20 YYSPELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.|++|+=.++....- .|.|++.|+++.|+ +.+|+++|++.
T Consensus 5 ~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGI-s~~tl~~W~k~ 46 (89)
T d2jn6a1 5 TYSEEFKRDAVALYENSDGASLQQIANDLGI-NRVTLKNWIIK 46 (89)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 8999999999999998299859999999798-98899999999
No 3
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=93.62 E-value=0.034 Score=32.77 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf 5899999999998589238999615889888899999833989
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185)
|+.++-..|++.+.+|.|.++|++..++ |.+||++|++...+
T Consensus 17 Ls~dlR~rIv~~~~~G~s~r~iA~~~~V-S~~tV~k~l~r~~~ 58 (123)
T d1pdnc_ 17 LPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQE 58 (123)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHHHC
T ss_conf 9899999999999804899999999896-99999999999871
No 4
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.67 E-value=0.054 Score=31.46 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 589999999999858923899961588988889999983398
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
|+-++-..|++.+.+|.|-++|++..++ |.+|+.+|++...
T Consensus 15 ls~DLR~Riv~~~~~G~s~r~aA~rf~V-S~s~v~k~l~r~r 55 (63)
T d1k78a1 15 LPDVVRQRIVELAHQGVRPCDISRQLRV-SHGCVSKILGRYY 55 (63)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 9999999999999959989999999597-7999999999999
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.92 E-value=0.19 Score=27.75 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHCCHH--HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 589999999999858923--89996158898888999998339899999999
Q gi|254781188|r 21 YSPELFAGILDQVANGKA--LGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeS--Lr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+|.+-=-+||.++-.|.. -..|+++.|+| .+||..|++..++....+.+
T Consensus 8 LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~-~STvs~IlKnK~kil~~~~~ 58 (66)
T d1hlva1 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIP-PSTLSTILKNKRAILASERK 58 (66)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHHTCC-HHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 7799999999999808721099999995997-64799999879999988998
No 6
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=88.64 E-value=0.54 Score=24.78 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=39.7
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985-8923899961588988889999983398999999999997379999998620
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185)
-.++.+-+ .|-|++.||+.-|+ +.+|||++....+++-....+....+..-.++++++.
T Consensus 16 ~~l~~~~G~~~~s~~~Ia~~agv-s~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~ 75 (77)
T d2gfna1 16 LALIAREGISAVTTRAVAEESGW-STGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDE 75 (77)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHSS-CHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999859040579999998788-8779988883999999999999999999999999838
No 7
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=88.09 E-value=0.46 Score=25.22 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985-892389996158898888999998339899999999999737999999862
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+|..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-.........+....++.+++
T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 71 (73)
T d1t56a1 14 NLLEDRPLADISVDDLAKGAGI-SRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE 71 (73)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999759150779999998698-888998888499999999999999999999999871
No 8
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=88.07 E-value=0.57 Score=24.62 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999985-892389996158898888999998339899999999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
..++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-....+
T Consensus 15 ~~l~~~~G~~~~si~~Ia~~agv-s~~~~y~~F~sK~~L~~~~~~ 58 (71)
T d1ui5a1 15 ADLFDRRGYESTTLSEIVAHAGV-TKGALYFHFAAKEDLAHAILE 58 (71)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999859462679999998794-876999898299999999999
No 9
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=84.29 E-value=1.2 Score=22.43 Aligned_cols=45 Identities=9% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999985-89238999615889888899999833989999999999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185)
..++..-+ ++-|++.||+.-|+ +.+|||+...+.+++-.......
T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agv-s~~~~y~~F~~K~~L~~~~~~~~ 56 (72)
T d1vi0a1 11 VEVIAENGYHQSQVSKIAKQAGV-ADGTIYLYFKNKEDILISLFKEK 56 (72)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999859041559999998794-98799888839999999999999
No 10
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=83.17 E-value=0.68 Score=24.10 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHH--CCHHH-------HHHHHCCC--CCCHHHHHHHHHCC
Q ss_conf 458999999999985--89238-------99961588--98888999998339
Q gi|254781188|r 20 YYSPELFAGILDQVA--NGKAL-------GHVLRKVG--MPKYSTFYRWIKKD 61 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA--~GeSL-------r~ICkd~g--MPs~sTV~rWL~kd 61 (185)
++++++|+-|-..-- ..-|+ ...|+..| .||+.||+++|+.-
T Consensus 7 ~~~~~~we~i~~~YL~~~~ps~~~~y~~i~~~c~~~gl~~PS~~T~~rri~~l 59 (75)
T d2ezia_ 7 EFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQL 59 (75)
T ss_dssp CSCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 09999999999998172489899999999999998399999999999999948
No 11
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=82.20 E-value=0.58 Score=24.55 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999858923899961588988889999983398999999
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.++.+.+.=-++-|++.||+.-|+ +.+|||.+..+.+++-...
T Consensus 16 a~~l~~~~G~~~~si~~Ia~~agv-s~~t~Y~~F~~Ke~L~~~~ 58 (76)
T d2fd5a1 16 ATQALLERGAVEPSVGEVMGAAGL-TVGGFYAHFQSKDALMLEA 58 (76)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHTTC-CGGGGGGTCSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHH
T ss_conf 999999849130569999998389-9550042089999999999
No 12
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=81.76 E-value=1.6 Score=21.63 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999999737
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRL 76 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qa 76 (185)
.+.+.-+..++ +|-|++.||+.-|+ +.+|||......+++-.....-...+.
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~~iY~~F~~k~~Ll~~~~~~~~~~~ 62 (75)
T d2id6a1 7 AILKAAVEVFGKKGYDRATTDEIAEKAGV-AKGLIFHYFKNKEELYYQAYMSVTEKL 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTC-CTHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999839351679999988499-888998888799999999999999999
No 13
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=81.64 E-value=1.4 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=33.3
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8923899961588988889999983398999999999997379999998
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
.|-|++.||+.-|+ +.+|||....+.+++-... .+...+.+.+.+
T Consensus 23 ~~~s~~~Ia~~agv-s~~t~Y~~F~~K~~L~~~~---~~~~~~~~~~~l 67 (74)
T d1v7ba1 23 ETLSYDSLAEATGL-SKSGLIYHFPSRHALLLGM---HELLADDWDKEL 67 (74)
T ss_dssp TTCCHHHHHHHHCS-CHHHHHHHCSSHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHH---HHHHHHHHHHHH
T ss_conf 63579999988496-9223855079999999999---999999999999
No 14
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=81.64 E-value=1.2 Score=22.41 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+..++..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-....+
T Consensus 20 a~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~K~~L~~~~~~ 64 (81)
T d1rkta1 20 AKTVFKRKGFELTTMKDVVEESGF-SRGGVYLYFSSTEEMFRRIIE 64 (81)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999859251779999998694-988998888499999999999
No 15
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=79.87 E-value=1.1 Score=22.60 Aligned_cols=46 Identities=7% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999985-8923899961588988889999983398999999999997
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQC 74 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~ 74 (185)
.++..-+ .+-|++.||+.-|+ +.+|||++..+.+++-....+....
T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agv-s~~~~y~~F~~k~~L~~~~~~~~~~ 62 (75)
T d3c07a1 16 RLFQERGYDRTTMRAIAQEAGV-SVGNAYYYFAGKEHLIQGFYDRIAA 62 (75)
T ss_dssp HHHHHTCSTTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999749140779999998793-9879998985999999999999999
No 16
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=78.53 E-value=2.2 Score=20.71 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=27.9
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 8923899961588988889999983398999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+|-|++.||+.-|+ +.+|||++..+.+++-...
T Consensus 23 ~~~ti~~Ia~~agv-s~~s~y~~F~~K~~l~~~~ 55 (79)
T d2fbqa1 23 AETSLRLITSKAGV-NLAAVNYHFGSKKALIQAV 55 (79)
T ss_dssp TTCCHHHHHHHHTS-CHHHHHHHTCSHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 50409999999882-8557878776999999977
No 17
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=78.27 E-value=1.8 Score=21.34 Aligned_cols=57 Identities=9% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985-89238999615889888899999833-989999999999973799999986
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKK-DLKLQEAYTEALQCRLDLLAEELL 84 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~k-deEfreqYa~Are~qaD~laEEIL 84 (185)
..++..-+ .|-|++.||+.-|+ +.+|||..... .+++-....+-.......+.+..+
T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agv-s~~~iy~~F~~~Ke~L~~~~~~~~~~~~~~~~~~~~ 70 (73)
T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGA-PKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSM 70 (73)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCC-CSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999849241779999998688-877999985998999999999999999999999978
No 18
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=76.68 E-value=2.5 Score=20.37 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+-.++..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-....
T Consensus 16 a~~l~~~~G~~~~t~~~Ia~~agv-s~~t~y~~F~sKe~L~~~~~ 59 (78)
T d2o7ta1 16 TCNLYRTHHHDSLTMENIAEQAGV-GVATLYRNFPDRFTLDMACA 59 (78)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 999999849140679999988399-88799998869999999999
No 19
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=76.67 E-value=2.5 Score=20.37 Aligned_cols=43 Identities=7% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9999985-8923899961588988889999983398999999999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+++..-+ .|-|++.||+.-|+ +.+|||.+....+++-.....-
T Consensus 11 ~l~~~~G~~~~si~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~ 54 (70)
T d2gena1 11 ACFSEHGVDATTIEMIRDRSGA-SIGSLYHHFGNKERIHGELYLA 54 (70)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCC-CHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999859240879999998795-8779998987999999999999
No 20
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=76.43 E-value=2.4 Score=20.49 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999985-89238999615889888899999833989999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+-++|..-+ .|-|++.||+.-|+ +.+|||.+....+++-....
T Consensus 8 aA~~lf~~~G~~~~ti~~Ia~~agv-s~~~~Y~~F~~K~~L~~~~~ 52 (69)
T d2i10a1 8 TAMELFWRQGYEGTSITDLTKALGI-NPPSLYAAFGSKRDLFEKTL 52 (69)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999879062779999998687-86299888859999999999
No 21
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=73.61 E-value=1.5 Score=21.71 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=31.1
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 99999985892389996158898888999998339
Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
+.|...-..|.+-++|++.-|. +.+|||+-|++.
T Consensus 9 ~~V~~L~~~G~gat~IAk~lgI-~R~SVYR~L~~~ 42 (43)
T d1gdta1 9 DAVLNMWQQGLGASHISKTMNI-ARSTVYKVINES 42 (43)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSC
T ss_pred HHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHC
T ss_conf 9999999948989999999798-799999998601
No 22
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=70.10 E-value=3.5 Score=19.34 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99858923899961588988889999983398999999999997379999998
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
+.=-+|-|++.||+.-|+ +.+|||.+..+.+++-.. +.+...+-+.+.+
T Consensus 16 ~~G~~~~ti~~Ia~~agv-s~~~iy~~F~sK~~L~~~---~~~~~~~~~~~~~ 64 (69)
T d2np5a1 16 ESGLEGASVREVAKRAGV-SIGAVQHHFSTKDEMFAF---ALRTLVDKLLARL 64 (69)
T ss_dssp HHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHH
T ss_conf 849140679999988398-887998888399999999---9999999999999
No 23
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=69.82 E-value=3.5 Score=19.30 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999858923899961588988889999983398999999
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
-+..+|.+-+.|-|++.|++.-|+ +.+|||.+..+.+++-...
T Consensus 9 aA~~l~~~~G~~~t~~~Ia~~agv-s~~~~Y~~F~~K~~L~~~~ 51 (70)
T d2hkua1 9 AATELFLEHGEGVPITQICAAAGA-HPNQVTYYYGSKERLFVEV 51 (70)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTC-CHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCC-CHHHHHHCCCCHHHHHHHH
T ss_conf 999998761357449999988788-8536873089999999999
No 24
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=68.18 E-value=1.9 Score=21.14 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999998589238999615889888899999833
Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
--+|+..++.|.|-..|+..-|+ |..||...+..
T Consensus 11 E~~vl~ll~~G~s~~eIA~~l~i-S~~TV~~~~~~ 44 (67)
T d1a04a1 11 ERDILKLIAQGLPNKMIARRLDI-TESTVKVHVKH 44 (67)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999967998999999788-88899999999
No 25
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=67.92 E-value=1.8 Score=21.23 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999998589238999615889888899999833
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
--.+||..++.|.|.+.|....|+ |.+||...+..
T Consensus 16 rE~~vl~~l~~G~s~~eIA~~l~i-S~~TV~~~~~~ 50 (70)
T d1yioa1 16 REQQVLQLTIRGLMNKQIAGELGI-AEVTVKVHRHN 50 (70)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999999999828999999989797-99999999999
No 26
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=67.72 E-value=1.9 Score=21.19 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999998589238999615889888899999833
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
---+|+..++.|.|-..|...-|+ |.+||...+..
T Consensus 8 rE~~vl~l~~~G~s~~eIA~~l~i-S~~TV~~~~~~ 42 (65)
T d1l3la1 8 KEATYLRWIAVGKTMEEIADVEGV-KYNSVRVKLRE 42 (65)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999999999936988899999788-89999999999
No 27
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=66.93 E-value=4.1 Score=18.91 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999985892389996158898888999998339899999999
Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
++.|..+=-+|-|++.||+.-|+ +.+|||+.....+++-....+
T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agv-s~~~iY~~F~sK~~L~~~~~~ 57 (74)
T d2g7sa1 14 RTLIIRGGYNSFSYADISQVVGI-RNASIHHHFPSKSDLVCKLVS 57 (74)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHH
T ss_conf 99999859150679999998781-841698888399999999999
No 28
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=65.66 E-value=4.3 Score=18.75 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-985892389996158898888999998339----8999999999997379999998
Q gi|254781188|r 24 ELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 24 Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEI 83 (185)
.+...|=. |...|.|...+++..|+ +.+|+.+|.+.. .+.-.+++.+...-.+.|+.+.
T Consensus 10 ~~g~~ik~~R~~~gltq~~lA~~~gi-s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 73 (77)
T d2b5aa1 10 KFGRTLKKIRTQKGVSQEELADLAGL-HRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 99999999999809999999989797-99999999869989999999999999698999985423
No 29
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=65.60 E-value=2.1 Score=20.81 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999999998589238999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+---+|+..++.|.|...|+..-|+ |.+||...+..
T Consensus 7 ~rE~~vl~l~~~G~s~~eIA~~L~i-s~~TV~~~~~~ 42 (67)
T d1fsea_ 7 KREREVFELLVQDKTTKEIASELFI-SEKTVRNHISN 42 (67)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999836989999999888-88899999999
No 30
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=65.58 E-value=3.9 Score=19.03 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985892389996158898888999998339899999999999737999999862
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.|.+.=-.|-|++.||+.-|+ +.+|||.+..+.+++-.. ..+...+.+.+++++
T Consensus 17 l~~~~G~~~~t~~~Ia~~agv-s~~~~Y~~F~~K~~L~~~---~~~~~~~~~~~~v~~ 70 (75)
T d2hyja1 17 IASEEGLDGITIGRLAEELEM-SKSGVHKHFGTKETLQIS---TLDKAFVDFWHRVVE 70 (75)
T ss_dssp HHHHHCGGGCCHHHHHHHHTC-CHHHHHTTCSSHHHHHHH---HHHHHHHHHHHHHTG
T ss_pred HHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 999759030769999998890-989998888299999999---999999999999888
No 31
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=65.24 E-value=4.4 Score=18.70 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=28.9
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 58923899961588988889999983398999999
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
-.|-|++.||+.-|| +.+|||.+....+++-...
T Consensus 19 ~~~~s~~~Ia~~agv-s~~~~y~~F~~K~~L~~~~ 52 (71)
T d1jt6a1 19 YNATTTGEIVKLSES-SKGNLYYHFKTKENLFLEI 52 (71)
T ss_dssp TTTCCHHHHHHHTTC-CHHHHHHHHSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 140679999998785-8759988884999999999
No 32
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=64.44 E-value=4.5 Score=18.60 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=32.3
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58923899961588988889999983398999999999997379999998
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
-+|-|++.||+.-|+ +..|||+...+.+++-... .....+.+.+.+
T Consensus 27 ~~~~t~~~Ia~~agv-s~~~~Y~~F~~k~~L~~~~---~~~~~~~~~~~~ 72 (79)
T d2oi8a1 27 ASALSLNAIAKRMGM-SGPALYRYFDGRDELITEL---IRDAYRSQADSL 72 (79)
T ss_dssp TTSCCHHHHHHHTTC-CHHHHHTTCSSHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHH---HHHHHHHHHHHH
T ss_conf 030679999998679-9774455169999999999---999999999999
No 33
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=63.33 E-value=4.3 Score=18.73 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999-85892389996158898888999998339899999999
Q gi|254781188|r 28 GILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 28 ~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
.++.. =-+|-|++.||+.-|+ +.+|||......+++-.....
T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agv-s~~slY~yF~~k~~L~~~~~~ 56 (72)
T d1zk8a1 14 EIADANGVQEVTLASLAQTLGV-RSPSLYNHVKGLQDVRKNLGI 56 (72)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999869775669999999597-999998988399999999999
No 34
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=60.56 E-value=5.3 Score=18.15 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 9999985-89238999615889888899999833989999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
.+|..-+ +|-|++.||+.-|+ +.+|||++..+.+++-.
T Consensus 15 ~l~~~~G~~~~ti~~Ia~~agv-s~~t~y~~F~~K~~l~~ 53 (72)
T d1pb6a1 15 DTFSQFGFHGTRLEQIAELAGV-SKTNLLYYFPSKEALYI 53 (72)
T ss_dssp HHHHHHCTTTCCHHHHHHHTTS-CHHHHHHHSSSHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 9999859250679999998697-86799988869999999
No 35
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=59.79 E-value=5.4 Score=18.09 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 8923899961588988889999983398999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+|-|++.||+.-|+ +.+|||.+..+.+++-...
T Consensus 21 ~~~ti~~Ia~~agv-s~~~ly~~F~~K~~L~~~~ 53 (72)
T d2g3ba1 21 RGLRVNDVAEVAGV-SPGLLYYHFKDRIGLLEAA 53 (72)
T ss_dssp HHCCHHHHHHHHTS-CHHHHHHHHCSHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 40779999988596-9779998883999999999
No 36
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=59.09 E-value=3.1 Score=19.65 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99999999985892389996158898888999998339899999
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+.+-.++..-+ |-|++.||+.-|+ +.+|||......+++-..
T Consensus 8 ~aa~~l~~~~G-~~ti~~Ia~~agv-s~~~iY~~F~~K~~L~~~ 49 (65)
T d2g7ga1 8 EAALELVDRDG-DFRMPDLARHLNV-QVSSIYHHAKGRAAVVEL 49 (65)
T ss_dssp HHHHHHHHHHS-SCCHHHHHHHTTS-CHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHH
T ss_conf 99999997867-9789999988570-613131158999999999
No 37
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=58.13 E-value=5.8 Score=17.88 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 9999999985-892389996158898888999998339899999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
-+..++..-+ +| +++.||+.-|+ +.+|||+.....+++-..
T Consensus 20 aa~~l~~~~G~~~-t~~~Ia~~agv-s~~~~Y~~F~sK~~L~~a 61 (88)
T d1t33a1 20 AALAQFGEYGLHA-TTRDIAALAGQ-NIAAITYYFGSKEDLYLA 61 (88)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHTS-CHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHCC-CHHHHHCCCCCHHHHHHH
T ss_conf 9999998754016-79999988399-844310019899999999
No 38
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=57.66 E-value=5.9 Score=17.83 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=30.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998339899999999999737999999862
Q gi|254781188|r 53 TFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 53 TV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
|+|.|+.+||+..+.|.+|....+...++++++
T Consensus 42 ~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~ 74 (244)
T d1fp1d2 42 TKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 74 (244)
T ss_dssp ----CCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889988509999999999887878888999997
No 39
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=57.39 E-value=4.6 Score=18.54 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999999985892--------38999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
++++.|...|.+|. |.+.+|...|+ |..||.+-++.
T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~~La~~~~v-Sr~tvr~Al~~ 45 (78)
T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEV-SKSTITKSLEL 45 (78)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 799999999984999993999379999999887-98999999999
No 40
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=57.24 E-value=2.6 Score=20.15 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHH-------CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 58999999999985-------89238999615889888899999833989999
Q gi|254781188|r 21 YSPELFAGILDQVA-------NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA-------~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+-+.-+..||..=- +-..--.|....|| ++.|+|+|-..|..|-+
T Consensus 14 ~~q~~AA~~l~~Ne~~~~~~~ekktqeqiAeelGi-sr~tLyrWrt~dk~FI~ 65 (120)
T d2ao9a1 14 AKQIQAAYLLVENELMESNNEEKRTQDEMANELGI-NRTTLWEWRTKNQDFIA 65 (120)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTC-CHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHCCHHHHH
T ss_conf 99999999986030011000334149999999580-18889887606626999
No 41
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=56.46 E-value=6.2 Score=17.70 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985892389996158898888999998339899999999999737999999862
Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
|..+-+-|-.|++--. ...|+| +|.|+.++|++.+.|.+|....+...++.+++
T Consensus 21 W~~L~~avrtG~~~f~--~~~G~~----~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~ 74 (243)
T d1kyza2 21 WYHLKDAVLDGGIPFN--KAYGMT----AFEYHGTDPRFNKVFNKGMSDHSTITMKKILE 74 (243)
T ss_dssp GGGHHHHHHHCSCHHH--HHHSSC----HHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHH--HHCCCC----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9889999963997788--664998----79998769999999999876766657999997
No 42
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=54.64 E-value=3.5 Score=19.38 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 5899999999998589238999615889888899999833
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.|+ .--+||..++.|.+...|+..-++ |.+||-..+..
T Consensus 23 LT~-rE~~vl~ll~~G~s~~eIA~~l~i-S~~TV~~~~~~ 60 (87)
T d1p4wa_ 23 LSP-KESEVLRLFAEGFLVTEIAKKLNR-SIKTISSQKKS 60 (87)
T ss_dssp CCH-HHHHHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999-999999999928999999878697-99999999999
No 43
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=54.28 E-value=6.3 Score=17.65 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999985-8923899961588988889999983398999999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
-.++..-+ +|-|++.||+.-|+ +.+|||.+....+++-...
T Consensus 9 ~~l~~~~G~~~~s~~~Ia~~agv-s~~tiy~~F~~K~~L~~~~ 50 (62)
T d2vkva1 9 LELGNEVGIEGLTTRKLAQKLGV-EQPTLYWHVKNKRALLDAL 50 (62)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTS-CHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 99999839351789999988098-8889998887999999999
No 44
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=53.69 E-value=4.3 Score=18.73 Aligned_cols=39 Identities=10% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf 9999999985892389996158898888999998339899
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEf 64 (185)
.++.|.+.=-+|-|++.||+.-|+ +.+|||++..+.+++
T Consensus 13 a~~l~~~~G~~~~t~~~Ia~~agv-s~~~~y~~F~~k~~L 51 (69)
T d2fq4a1 13 SYELLLESGFKAVTVDKIAERAKV-SKATIYKWWPNKAAV 51 (69)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHH
T ss_conf 999999839240779999999785-887999998799999
No 45
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=53.36 E-value=6.9 Score=17.37 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=28.8
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998339899999999999737999999862
Q gi|254781188|r 53 TFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 53 TV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
++|.|+.++|++.+.|.+|...........+.+
T Consensus 41 ~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~ 73 (244)
T d1fp2a2 41 GFWDFLDKNPEYNTSFNDAMASDSKLINLALRD 73 (244)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989988759999999998865522001466765
No 46
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.16 E-value=6.9 Score=17.35 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99999985-892389996158898888999998339899999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
-.++..-+ .+-|++.||+.-|| |.+|||.+....+++-..
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agv-s~~~~Y~~F~~K~~l~~~ 52 (68)
T d2d6ya1 12 VAEFARHGIAGARIDRIAAEARA-NKQLIYAYYGNKGELFAS 52 (68)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHTC-CHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 99999859250679999988784-662898887499999999
No 47
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=51.70 E-value=4.1 Score=18.86 Aligned_cols=32 Identities=22% Similarity=0.571 Sum_probs=22.1
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999998589238999615889888899999833
Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
..|+... +|.+...+|+..|| |.+++|+-+++
T Consensus 58 ~~I~~ef-~G~n~~eLA~kY~l-S~~~I~~Ii~~ 89 (94)
T d1rr7a_ 58 LRIWNDF-NGRNVSELTTRYGV-TFNTVYKAIRR 89 (94)
T ss_dssp HHHHHHC-CSSCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999990-89989999999897-79999999999
No 48
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=51.56 E-value=7.3 Score=17.18 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999999985---89238999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+-+-+|++.|+ .+.++..|++.-||| .+|+++-++.
T Consensus 5 ~r~l~IL~~~a~~~~~~s~~eia~~~~~~-~st~~rll~t 43 (75)
T d1mkma1 5 KKAFEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMVV 43 (75)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 99999999998579998999999997919-9999999999
No 49
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=51.40 E-value=3.6 Score=19.22 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985-892389996158898888999998339899999999999737999999862
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+++.+=+ ++-|++.|++.-|| +.+|||.+....+++-.... + +..-+.+.+.+
T Consensus 6 ~~l~~~~G~~~~s~~~IA~~agv-s~~~ly~~F~sK~~L~~a~~---~-~~~~~~e~~~~ 60 (65)
T d2np3a1 6 RVCFAERGFDATSLRRIAETAGV-DQSLVHHFYGTKENLFLQAL---E-LPGKIEEAITA 60 (65)
T ss_dssp HHHC----------------------------CCC-CHHHHHHH---C-HHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH---H-HHHHHHHHHHH
T ss_conf 99999879040779999998786-88799988879999999999---9-87409999998
No 50
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=50.45 E-value=6.7 Score=17.47 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985892--------38999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-.++++.|.++|.+|. |.+.+|...|+ |..||.+-+..
T Consensus 11 y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~v-Sr~tvr~Al~~ 56 (100)
T d1v4ra1 11 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV-AAKTVSRALAV 56 (100)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS-CTTHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999999984999993988369999999887-98999999999
No 51
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=49.73 E-value=6.1 Score=17.75 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCHHH----HHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf 9999999998589238----999615889888899999833989
Q gi|254781188|r 24 ELFAGILDQVANGKAL----GHVLRKVGMPKYSTFYRWIKKDLK 63 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSL----r~ICkd~gMPs~sTV~rWL~kdeE 63 (185)
+..-.+-..+.+|-+. ..||...|+ |.+|+++|...-++
T Consensus 37 ~~l~~V~~L~~~G~~~~~A~~~VA~~~~v-s~~TL~nW~~~V~g 79 (99)
T d2ezla_ 37 PAVQAADEMLNQGISTKTAFATVAGHYQV-SASTLRDKYYQVQK 79 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHSSS-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHCC
T ss_conf 99999999998697089999999999598-89999999999789
No 52
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=49.50 E-value=7.9 Score=16.97 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999999985892--38999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGK--ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~Ge--SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+..-.|+..|.+|. |...++...|+ |.+|||+.|+.
T Consensus 5 ~~~~~iL~~L~~~~~~s~~eLa~~l~v-S~~ti~r~i~~ 42 (63)
T d1biaa1 5 TVPLKLIALLANGEFHSGEQLGETLGM-SRAAINKHIQT 42 (63)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 799999999997895879999999893-99999999999
No 53
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=49.32 E-value=7.9 Score=16.96 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
Q ss_conf 9999999858923899961588988889999983398999
Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ 65 (185)
Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfr 65 (185)
++.+.+.=-++-|++.||+.-|+ +.+|||....+.+++-
T Consensus 16 ~~l~~~~G~~~~t~~~Ia~~agv-s~~~iY~~F~~k~~L~ 54 (68)
T d2id3a1 16 GDALAADGFDALDLGEIARRAGV-GKTTVYRRWGTPGGLA 54 (68)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHHCSHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHH
T ss_conf 99999849340779999999786-8879999985999999
No 54
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=48.84 E-value=8.1 Score=16.91 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88988889999983398999999999997379999998620
Q gi|254781188|r 46 VGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185)
Q Consensus 46 ~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185)
.-+| ...|..|+..+|+|...+.+....+...+.+.+.++
T Consensus 108 l~i~-~~~~~~~~~~~p~~~~~~~~~ls~r~~~l~~rl~~~ 147 (147)
T d1zyba2 108 VCIS-KAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDE 147 (147)
T ss_dssp EEEE-HHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred EEHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3123-999999998799999999999999999999998569
No 55
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=48.81 E-value=8.1 Score=16.90 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHH-CC--HHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985-89--238999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVA-NG--KALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA-~G--eSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-.++.+-|...+. +| =|++.||+..|+-|.+|++..|..
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~ 48 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 48 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999982889889999977299999999999999
No 56
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=48.66 E-value=8.1 Score=16.91 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.8
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 99999985-8923899961588988889999983398
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
..|..-+. .|-...+.++.-|| +.+|||+.|+++.
T Consensus 23 ~~I~~aL~~~~gn~~~aA~~LGI-sR~TL~rkmkky~ 58 (60)
T d1umqa_ 23 EHIQRIYEMCDRNVSETARRLNM-HRRTLQRILAKRS 58 (60)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTS-CHHHHHHHHHTSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHCC
T ss_conf 99999999966859999999898-8999999999707
No 57
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=47.66 E-value=8.4 Score=16.79 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=28.7
Q ss_pred HHHHHHHHHC-CHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 9999999858-92389996158898888999998339
Q gi|254781188|r 26 FAGILDQVAN-GKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 26 ad~Ic~rIA~-GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.+..+..|.+ ..|+..|+...|..+.+.|.++.++.
T Consensus 3 l~~a~~lL~~t~~~i~~IA~~~Gf~~~~~F~r~Fk~~ 39 (62)
T d1bl0a2 3 MTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNY 39 (62)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999883699999999998799889999999988
No 58
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=44.61 E-value=6.4 Score=17.57 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=33.2
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--H--HHHHHHHHHHHHHHHHH
Q ss_conf 9985892389996158898888999998339--8--99999999999737999
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD--L--KLQEAYTEALQCRLDLL 79 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--e--EfreqYa~Are~qaD~l 79 (185)
.|...|.|...+++.-|+ +.+|+.+|.+.. | +.-.+.++|.....+.|
T Consensus 9 lR~~~g~tq~elA~~~gi-s~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l 60 (66)
T d1utxa_ 9 IREKKKISQSELAALLEV-SRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60 (66)
T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHH
T ss_pred HHHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 999859999999886355-7989999986998999999999999979879998
No 59
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=44.19 E-value=8 Score=16.92 Aligned_cols=38 Identities=5% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 9999985-89238999615889888899999833989999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+++.+-+ ++-|++.||+.-|+ +..+||+...+.+++-.
T Consensus 15 ~l~~~~g~~~~si~~ia~~~gv-s~~~~y~hF~~K~~L~~ 53 (68)
T d2g7la1 15 ALMRAEGLEKVTMRRLAQELDT-GPASLYVYVANTAELHA 53 (68)
T ss_dssp HHHHHHCSSSCCHHHHHHHTTS-CHHHHTTTCCSHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 9999849030789999999782-87676287759999999
No 60
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=43.98 E-value=9.6 Score=16.42 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH-----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999985-----8923899961588988889999983398999999
Q gi|254781188|r 24 ELFAGILDQVA-----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 24 Eiad~Ic~rIA-----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.+.+.-++.++ +|-|++.|++.-|+ +.+|||.+....+++-...
T Consensus 6 ~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agv-s~~~iy~hF~~K~~L~~~~ 54 (68)
T d1z0xa1 6 TIIAAAFSLLEKSPTLEQLSMRKVAKQLGV-QAPAIYWYFKNKQALLQSM 54 (68)
T ss_dssp HHHHHHHHHHHHSCCGGGCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 999999999987679231679999998772-6568999629999999999
No 61
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=41.02 E-value=10 Score=16.25 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHCCH-------HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8999999999985892-------3899961588988889999983
Q gi|254781188|r 22 SPELFAGILDQVANGK-------ALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge-------SLr~ICkd~gMPs~sTV~rWL~ 59 (185)
+..+++.|.+.|.+|+ +.+.+|+..|+ |..||..-+.
T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~~~La~~~~v-Sr~tvr~Al~ 47 (69)
T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDV-SRNTVREAFQ 47 (69)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 9999999999998299999296699999999897-9899999999
No 62
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=40.44 E-value=11 Score=16.06 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC---CHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 98589238999615889888899999833---9899--99999999973799999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK---DLKL--QEAYTEALQCRLDLLAE 81 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k---deEf--reqYa~Are~qaD~laE 81 (185)
|...|.|...+++.-|+ +.+|+.+|.+. .|.+ -.+++++.....+.|++
T Consensus 10 R~~~gltq~~la~~~gi-s~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~ 63 (68)
T d1b0na2 10 RKEKGYSLSELAEKAGV-AKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (68)
T ss_dssp HHHTTCCHHHHHHHHTC-CHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 99829999999989797-9999999985998999999999999998986999839
No 63
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=40.27 E-value=9 Score=16.59 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHC-C--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589238999615889888899999833-9--89999999999973799999
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKK-D--LKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k-d--eEfreqYa~Are~qaD~laE 81 (185)
.|...|.|...++..-|+ +.+|+.+|.+. . .+.-.+.+++...-.+.|++
T Consensus 9 ~R~~~g~sq~elA~~~gv-s~~~is~~E~g~~~~~~~l~~ia~~l~v~~~~l~~ 61 (63)
T d1r69a_ 9 KRIQLGLNQAELAQKVGT-TQQSIEQLENGKTKRPRFLPELASALGVSVDWLLN 61 (63)
T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 999849969999998373-99999998789894989999999998968999844
No 64
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=38.71 E-value=2.6 Score=20.15 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 89238999615889888899999833989999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+-|++.||+.-|| +.+|||++....+++-....
T Consensus 25 ~~~sv~~Ia~~agv-s~~t~Y~~F~~k~~l~~~~~ 58 (71)
T d2iu5a1 25 HQISVSDIMQTAKI-RRQTFYNYFQNQEELLSWIF 58 (71)
T ss_dssp GGCCHHHHHHHHTS-CGGGGGGTCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHH
T ss_conf 40779999987571-64589777679999999999
No 65
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=37.18 E-value=12 Score=15.73 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339----899999999999737999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLL 79 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~l 79 (185)
|-..|.+...+++.-|+ +.+|+.+|.+.. .+.-.+++.+...-.+.|
T Consensus 12 R~~~g~tq~~lA~~~gv-s~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~L 62 (66)
T d2r1jl1 12 RKKLKIRQAALGKMVGV-SNVAISQWERSETEPNGENLLALSKALQCSPDYL 62 (66)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99859999999999798-9999999986998999999999999969889998
No 66
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=36.04 E-value=6.2 Score=17.67 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=36.0
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985892389996158898888999998339899999999999737999999862
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+-+-+-.|++.-.. ..|. |+|.|+..++++.+.|..+........++.+++
T Consensus 23 ~L~~~vr~G~~~~~~--~~G~----~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 74 (253)
T d1tw3a2 23 RLPDAIRTGRPTYES--IYGK----PFYEDLAGRPDLRASFDSLLACDQDVAFDAPAA 74 (253)
T ss_dssp GHHHHHHHCCCCHHH--HHSS----CHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHH
T ss_pred HHHHHHHHCCCHHHH--CCCC----CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999849966664--1499----879988629999999999987768999999875
No 67
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.48 E-value=13 Score=15.45 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999999999985892--------3899961588988889999983
Q gi|254781188|r 23 PELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 23 ~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~ 59 (185)
.-+.+.|.+.|.+|+ |.+.+|...|+ |..||.+-+.
T Consensus 6 ~~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~v-Sr~tvr~Al~ 49 (74)
T d1hw1a1 6 GFAEEYIIESIWNNRFPPGTILPAERELSELIGV-TRTTLREVLQ 49 (74)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 9999999999984999994998349999999897-9899999999
No 68
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=33.41 E-value=13 Score=15.61 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=35.4
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339---8999999999997379999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD---LKLQEAYTEALQCRLDLLA 80 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd---eEfreqYa~Are~qaD~la 80 (185)
|-..|.|...+.+.-|+ +.+|+.+|.+.. .++-..++++.....+.|+
T Consensus 12 R~~~gltq~~lA~~~gv-s~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll 62 (65)
T d2croa_ 12 RIALKMTQTELATKAGV-KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQ 62 (65)
T ss_dssp HHHTTCCHHHHHHHHTS-CHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99849999999999786-7949998787799999999999999699899983
No 69
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=32.62 E-value=13 Score=15.48 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 999999999985892389996158898888999998339
Q gi|254781188|r 23 PELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 23 ~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
..+.+-|-+.+.+.-++..+++.-|| |.++|.++.++.
T Consensus 6 ~~v~~yI~~~~~~~~tl~~lA~~~~~-s~~~l~r~Fk~~ 43 (54)
T d1bl0a1 6 HSILDWIEDNLESPLSLEKVSERSGY-SKWHLQRMFKKE 43 (54)
T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHSSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf 99999998654799999999999893-999999999999
No 70
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=32.09 E-value=10 Score=16.17 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=37.5
Q ss_pred CHHHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC--C--HHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999-98589238999615889888899999833--9--899999999999737999
Q gi|254781188|r 22 SPELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK--D--LKLQEAYTEALQCRLDLL 79 (185)
Q Consensus 22 s~Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k--d--eEfreqYa~Are~qaD~l 79 (185)
...+.+.|=. |...|.|...+++.-|+ +.+++.+|.+. . .+.-.+++.+.....+.|
T Consensus 6 ~~~ig~~lr~~R~~~g~sq~~lA~~~gi-s~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l 67 (79)
T d1y9qa1 6 KSQIANQLKNLRKSRGLSLDATAQLTGV-SKAMLGQIERGESSPTIATLWKIASGLEASFSAF 67 (79)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHSS-CHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999829999999998771-1648999986998999999999999989879998
No 71
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=31.97 E-value=15 Score=15.18 Aligned_cols=37 Identities=5% Similarity=0.110 Sum_probs=29.6
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99858923899961588988889999983398999999
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+.=-+|-|++.|++.-|+ +.+|||+.....+++-...
T Consensus 19 ~~G~~~~si~~Ia~~agv-s~~~~Y~~F~~K~~L~~~~ 55 (73)
T d2fx0a1 19 ERGYEGTSIQEIAKEAKV-NVAMASYYFNGKENLYYEV 55 (73)
T ss_dssp HHCTTTCCHHHHHHHHTS-CHHHHHHHHTSHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 869351769999998784-8649998884999999999
No 72
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=31.94 E-value=9.9 Score=16.31 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 44589999999999858923899961588988889999983398
Q gi|254781188|r 19 IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 19 i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
.++++.- -.+|..|++..|++..++.-|| +++++++-|+.=+
T Consensus 16 ~~~~~~~-l~~~~ai~~~gs~~~AA~~l~~-sq~avs~~i~~lE 57 (127)
T d1b9ma1 16 LFADPRR-ISLLKHIALSGSISQGAKDAGI-SYKSAWDAINEMN 57 (127)
T ss_dssp EEECHHH-HHHHHHHHHHSSHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 6739999-9999999995995899988158-7629999999999
No 73
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=31.46 E-value=15 Score=15.13 Aligned_cols=38 Identities=8% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 458999999999985892389996158898888999998339
Q gi|254781188|r 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.|-.++...-+.+ . | +.++..+.-|+ +.+|+|+.|++.
T Consensus 20 ~~Er~~I~~aL~~-~-g-n~~~aA~~Lgi-sr~tL~rKlkk~ 57 (61)
T d1g2ha_ 20 FYEAQVLKLFYAE-Y-P-STRKLAQRLGV-SHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHHHH-S-C-SHHHHHHHTTS-CTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-C-C-CHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf 9999999999998-7-8-99999999798-899999999996
No 74
>d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]}
Probab=30.93 E-value=15 Score=15.07 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 9999985--892389996158898888999998339
Q gi|254781188|r 28 GILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 28 ~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.|...++ -|.|+...|+... .+....|+.+.++
T Consensus 30 ~l~~~l~~~~~~sip~~~~~~~-a~~~aaYRF~~N~ 64 (474)
T d1musa_ 30 NVAAQLAKYSGKSITISSEGSK-AAQEGAYRFIRNP 64 (474)
T ss_dssp HHHHHHHHTTTSCHHHHTTTCH-HHHHHHHHHHTCT
T ss_pred HHHHHHHHCCCCCCCCHHCCCH-HHHHHHHHHHCCC
T ss_conf 9999997476997240322897-9999999987089
No 75
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=29.71 E-value=12 Score=15.84 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--HHHHHHHHHH
Q ss_conf 999999-9985892389996158898888999998339--8999999999
Q gi|254781188|r 25 LFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKKD--LKLQEAYTEA 71 (185)
Q Consensus 25 iad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--eEfreqYa~A 71 (185)
+...|- .|...|.|...+++.-|+ +.+|+.+|-+.. |.+..-+.-|
T Consensus 10 ~g~~ik~~R~~~gltq~~lA~~~gi-s~~~i~~~E~g~~~p~~~~l~~ia 58 (69)
T d1y7ya1 10 FGQRLRELRTAKGLSQETLAFLSGL-DRSYVGGVERGQRNVSLVNILKLA 58 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999999839999999868299-898999998799999999999999
No 76
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=29.58 E-value=12 Score=15.80 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 23899961588988889999983
Q gi|254781188|r 37 KALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 37 eSLr~ICkd~gMPs~sTV~rWL~ 59 (185)
=||.+|.|.-++| .||+.|-|-
T Consensus 25 WSLaklsKra~~P-MS~LRR~LT 46 (81)
T d2obpa1 25 WSLPKIAKRAQLP-MSVLRRVLT 46 (81)
T ss_dssp CBHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHCCCC-HHHHHHHHH
T ss_conf 6388988661796-899999999
No 77
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=28.27 E-value=8.2 Score=16.88 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=27.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998339899999999999737999999862
Q gi|254781188|r 53 TFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 53 TV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
++|.|+..+++..+.|.+|........++.+++
T Consensus 43 ~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~ 75 (256)
T d1qzza2 43 PFWEDLSADVALADSFDALMSCDEDLAYEAPAD 75 (256)
T ss_dssp CHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHH
T ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889998759999999999987627899999875
No 78
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=27.46 E-value=16 Score=14.86 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=24.1
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 9985892389996158898888999998339
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
-|...|.|-..+++..|+ +.+|+.+|=+..
T Consensus 7 ~R~~~gltQ~elA~~lGv-s~~tvs~~E~G~ 36 (62)
T d2ppxa1 7 IRRALKLTQEEFSARYHI-PLGTLRDWEQGR 36 (62)
T ss_dssp HHHHTTCCHHHHHHHHTC-CHHHHHHHHTTS
T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCC
T ss_conf 999969999999999698-999999887798
No 79
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=26.94 E-value=17 Score=14.78 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=12.6
Q ss_pred HHHHHHCC-HHHHHHHHCCCCCCHHHHH
Q ss_conf 99998589-2389996158898888999
Q gi|254781188|r 29 ILDQVANG-KALGHVLRKVGMPKYSTFY 55 (185)
Q Consensus 29 Ic~rIA~G-eSLr~ICkd~gMPs~sTV~ 55 (185)
|+..|..| .|-+.|.+..|+ |-.|+-
T Consensus 50 ia~~L~~G~~s~reI~~~~gv-s~aTIt 76 (101)
T d1jhga_ 50 IIEELLRGEMSQRELKNELGA-GIATIT 76 (101)
T ss_dssp HHHHHHHCCSCHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCC-CHHHHH
T ss_conf 999999089679999999698-757788
No 80
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=25.69 E-value=19 Score=14.47 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 8999999999985892389996158898888999998339
Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.+.-.+-|.-+.-.|.|...||..-|+| .+||..++..-
T Consensus 20 p~~~r~v~~l~~~~~~s~~eIA~~lgis-~~tv~~~l~ra 58 (68)
T d1or7a1 20 PEDLRMAITLRELDGLSYEEIAAIMDCP-VGTVRSRIFRA 58 (68)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHTTSC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 9999999999999098999999998949-99999999999
No 81
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=25.19 E-value=19 Score=14.41 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999983398999999999997379999
Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCRLDLLA 80 (185)
Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~qaD~la 80 (185)
=.|..||+.+|+.+.+|..-++.-+..+.
T Consensus 112 L~FRD~Lr~~p~~~~~Y~~lK~~la~~~~ 140 (167)
T d2nrka1 112 LAFRNYLRENPAIATTYGTLKKQLAQAHP 140 (167)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999981799999999999999998789
No 82
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=24.74 E-value=19 Score=14.36 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589238999615889888899999833----989999999999973799999
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laE 81 (185)
..|.|...+.+.-|+ +.+|+.+|++. ++++..+.+.+....+|++..
T Consensus 12 ~~glsq~~LA~~lGv-s~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~ 62 (87)
T d2icta1 12 ELNVSLREFARAMEI-APSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 62 (87)
T ss_dssp HHTCCHHHHHHHHTC-CHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH
T ss_pred HCCCCHHHHHHHHHH-CHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 869999999999724-699999999850179899999999998919999982
No 83
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=23.94 E-value=18 Score=14.63 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=38.7
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339----899999999999737999999862
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEILE 85 (185)
|...|.|...+.+.-|+ +.+++.+|-+.. -+.-.+++.+.....+.|+.++-+
T Consensus 21 R~~~gltq~~lA~~lgi-s~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~~~~~ 77 (87)
T d1lmb3_ 21 KNELGLSQESVADKMGM-GQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 77 (87)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCHHHHH
T ss_conf 99939999999988672-2888999981147875999999999989799998746899
No 84
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=23.59 E-value=20 Score=14.22 Aligned_cols=40 Identities=10% Similarity=-0.127 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 58999999999985892389996158898888999998339
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.++.--+-|.-+.-.|.|...|+..-|++ .+||...+..-
T Consensus 22 L~~~~r~v~~l~~~~~~s~~eIA~~lgis-~~tv~~~~~ra 61 (71)
T d1rp3a2 22 LPEREKLVIQLIFYEELPAKEVAKILETS-VSRVSQLKAKA 61 (71)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 99999999999986848999999997989-99999999999
No 85
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.84 E-value=22 Score=13.99 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=18.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCHH-HH-HHH-HHHHHHHHHHHHHHHHH
Q ss_conf 8999615889888899999833989-99-999-99999737999999862
Q gi|254781188|r 39 LGHVLRKVGMPKYSTFYRWIKKDLK-LQ-EAY-TEALQCRLDLLAEELLE 85 (185)
Q Consensus 39 Lr~ICkd~gMPs~sTV~rWL~kdeE-fr-eqY-a~Are~qaD~laEEILE 85 (185)
|..|..|..+| +.+.+-..+--+ |. +.| ..-|...|-...|||.+
T Consensus 15 L~~I~~D~sVP--RNIRr~a~e~~~~L~n~~~~~~vRaa~ais~LdeIs~ 62 (85)
T d2qsba1 15 LDELSQDITVP--KNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMAN 62 (85)
T ss_dssp HHHHHTCTTSC--HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99985389887--6899999999999877885545789999999997623
No 86
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.49 E-value=18 Score=14.59 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 99999858923899961588988889999983398
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
.+|..|++-.|+++.++.-++ ++++|++.|++=+
T Consensus 12 ~~f~~v~~~gs~t~AA~~l~i-sq~avs~~l~~lE 45 (89)
T d2esna1 12 LVFDALYRHRNVGTAASELAI-SASAFSHALGRLR 45 (89)
T ss_dssp HHHHHHHHHSSHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 999999980999999998779-9847559999998
No 87
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=21.24 E-value=23 Score=13.91 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 9985892389996158898888999998339
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
-|-..|.|-..++...|+ +..|+.+|=+..
T Consensus 9 ~R~~~gltQ~elA~~LGv-s~~ti~~yE~G~ 38 (67)
T d2auwa1 9 WMHRNNLSLTTAAEALGI-SRRMVSYYRTAH 38 (67)
T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTS
T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCC
T ss_conf 999959999999999599-899999998699
No 88
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=20.81 E-value=23 Score=13.85 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=19.0
Q ss_pred HHHHHHCCCCCCHHHHH-------HHHHCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89996158898888999-------998339-899999999999737999999862
Q gi|254781188|r 39 LGHVLRKVGMPKYSTFY-------RWIKKD-LKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 39 Lr~ICkd~gMPs~sTV~-------rWL~kd-eEfreqYa~Are~qaD~laEEILE 85 (185)
|..|..|..+| +.+. .||.+. .+..- |...+-...|||..
T Consensus 17 L~qI~~D~sVP--RNIRr~a~~~~~~L~n~~~~~~v-----Raa~ais~LDeIs~ 64 (88)
T d2qzga1 17 LEEIVEDTTVP--RNIRAAADNAKNALHNEEQELIV-----RSATAIQYLDDISE 64 (88)
T ss_dssp HHHHHTCTTSC--HHHHHHHHHHHHHTTCTTSCHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHHHHC
T ss_conf 99985489887--68999999999998778956447-----89999999998633
Done!