BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781188|ref|YP_003065601.1| hypothetical protein
CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040865|gb|ACT57661.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
           MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK
Sbjct: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60

Query: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
           DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN
Sbjct: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120

Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180
           QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI
Sbjct: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180

Query: 181 IEHNN 185
           IEHNN
Sbjct: 181 IEHNN 185


>gi|315122903|ref|YP_004063392.1| hypothetical protein CKC_05795 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496305|gb|ADR52904.1| hypothetical protein CKC_05795 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 180

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +K   K  + +K  + YS  L   I+ ++ANG+ +  VL+   MP    FY W+ +  + 
Sbjct: 1   MKANSKKRKPQKPTVKYSQSLTKEIITRIANGETMQAVLKYPNMPTADAFYDWLARYPEH 60

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           +E+Y +A   +L+L+ EE+  EP PT  ELANPVFYSKMRDRKQ+   +L E+L+ Q YG
Sbjct: 61  RESYNQARVKKLELMVEEVTNEPEPTEHELANPVFYSKMRDRKQKSVLWLAERLNRQIYG 120

Query: 125 PRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSII 181
             ++VE KHTIDL+P + ++ E  KH +   + R+  ++TEKPLE+ + S A+QS +
Sbjct: 121 NHMTVEQKHTIDLKPVLAKIEERRKHQQANKAMRV-LEATEKPLELTKLSKAKQSTM 176


>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040894|gb|ACT57690.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79
           Y+ E    IL   + G +L    +K G+   S F+ W+K+D + L++ Y +A Q  ++ L
Sbjct: 6   YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 64

Query: 80  AEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138
           +E L     AP  EE  +     K+R+ + +   + LEK     YG  VSVE KHTIDL+
Sbjct: 65  SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLK 124

Query: 139 PAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170
           P ++R++     K LKP+   +   K TEKPLE+
Sbjct: 125 PLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 155


>gi|317120681|gb|ADV02504.1| hypothetical protein SC1_gp120 [Liberibacter phage SC1]
 gi|317120723|gb|ADV02545.1| hypothetical protein SC2_gp120 [Liberibacter phage SC2]
 gi|317120784|gb|ADV02605.1| hypothetical protein SC2_gp120 [Candidatus Liberibacter asiaticus]
 gi|317120825|gb|ADV02646.1| hypothetical protein SC1_gp120 [Candidatus Liberibacter asiaticus]
          Length = 171

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79
           Y+ E    IL   + G +L    +K G+   S F+ W+K+D + L++ Y +A Q  ++ L
Sbjct: 15  YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 73

Query: 80  AEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138
           +E L     AP  EE  +     K+R+ + +   + LEK     YG  VSVE KHTIDL+
Sbjct: 74  SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLK 133

Query: 139 PAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170
           P ++R++     K LKP+   +   K TEKPLE+
Sbjct: 134 PLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 164


>gi|260596961|ref|YP_003209532.1| hypothetical protein CTU_11690 [Cronobacter turicensis z3032]
 gi|260216138|emb|CBA28941.1| hypothetical protein CTU_11690 [Cronobacter turicensis z3032]
          Length = 164

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+ AGI   +A+G++L  V  + GMP  ST +RW+ +  + ++ Y +A + R D + 
Sbjct: 13  YLPEVAAGICSLLADGESLRKVCDRPGMPNKSTVFRWLAQHEEFRDQYAKATETRADAIF 72

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKH 133
           EE+ +     AEE A  V  +++R   ++   + L +++ +KYG +VS E  H
Sbjct: 73  EEMFDIADTVAEEAAA-VGKARLRIDTRK---WALARMNPKKYGDKVSQEIDH 121


>gi|315121941|ref|YP_004062430.1| hypothetical protein CKC_00955 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495343|gb|ADR51942.1| hypothetical protein CKC_00955 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 172

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 6/164 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79
           Y+ E    IL  +A+G  L    +  G+    TF+ W+++D   L++ Y +A    ++ L
Sbjct: 8   YTLERTNKILASIASGMTLAKSCKLHGVL-VMTFFAWLERDFDDLKKRYEQAKISHMEHL 66

Query: 80  AEELLEE-PAPTAEELAN-PVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           ++++ +   AP +EE    PV + K R+ + +   + LEK     YG  ++VE KHTIDL
Sbjct: 67  SDKIADTIEAPLSEEEKKYPVSF-KRRELQMKRLQWELEKRYRNVYGNHMTVEQKHTIDL 125

Query: 138 RPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSII 181
           +P + ++ E  KH +   + R+  ++TEKPLE  + S  EQS +
Sbjct: 126 KPVLAKIEERRKHQQANKAMRVI-EATEKPLECRKLSKDEQSTM 168


>gi|156934896|ref|YP_001438812.1| hypothetical protein ESA_02744 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533150|gb|ABU77976.1| hypothetical protein ESA_02744 [Cronobacter sakazakii ATCC BAA-894]
          Length = 150

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+ A I   +A+G++L  V  + GMP  ST +RW+ +  + ++ Y +A + R D + 
Sbjct: 15  YLPEVAADICSLLADGESLRKVCERPGMPNKSTVFRWLAQHEEFRDQYAKATETRADAIF 74

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKH-----TI 135
           EE+ +     AEE A  V  +++R   ++   + L +++ +KYG +VS E  H     T+
Sbjct: 75  EEMFDIADTVAEEAA-AVGKARLRIDTRK---WALARMNPKKYGDKVSQEIDHKSSDGTM 130

Query: 136 DLRPAIERL 144
             +P   RL
Sbjct: 131 ATKPTTIRL 139


>gi|251791567|ref|YP_003006288.1| hypothetical protein Dd1591_4010 [Dickeya zeae Ech1591]
 gi|247540188|gb|ACT08809.1| hypothetical protein Dd1591_4010 [Dickeya zeae Ech1591]
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 64/110 (58%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +A+G++L  V R  GMP  +T +RW+ ++   ++ Y +A   R D++ 
Sbjct: 106 YMPEVADDICTLLADGESLRDVCRHPGMPNKATVFRWLAENEVFRDQYAKATDVRADVIF 165

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           +E++ + A + E  A  V  S+++   ++   ++L +++ +KYG R++ E
Sbjct: 166 DEII-DIADSTEADAAEVAKSRLKIDARK---WVLSRMAPKKYGERITQE 211


>gi|268589861|ref|ZP_06124082.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
 gi|291314844|gb|EFE55297.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
          Length = 140

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE    I  ++A G++L  V  + GMP  +T +RW+ ++ + ++ Y +A + R D L 
Sbjct: 13  YMPETAHDICAKLAEGESLRSVCNRQGMPSKATVFRWLSENAEFRDQYAKATEQRADALF 72

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+LE   +  P + E+A     +K+R   ++   + L ++S +KYG +V+ E
Sbjct: 73  EEMLEIADDVLPDSAEVAK----AKLRIDTRK---WSLARMSPKKYGDKVTQE 118


>gi|329119588|ref|ZP_08248269.1| putative phage associated protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464185|gb|EGF10489.1| putative phage associated protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 135

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 29  ILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPA 88
           I + +A G+++  + R   MP  ST YRWI +  +  E Y  A + + D+LA+E++E   
Sbjct: 12  ICELLAAGQSMAQICRSKAMPAQSTVYRWIAESAEFSERYAHAREMQADMLADEIIEIAD 71

Query: 89  PTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVES 131
               E A         D ++    +L  +L+ +KYG RV V +
Sbjct: 72  SCEPEAAAVAKAKARIDARK----WLAARLAPKKYGDRVDVSA 110


>gi|254240164|ref|ZP_04933486.1| hypothetical protein PA2G_00805 [Pseudomonas aeruginosa 2192]
 gi|126193542|gb|EAZ57605.1| hypothetical protein PA2G_00805 [Pseudomonas aeruginosa 2192]
          Length = 188

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 12/132 (9%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD--LKLQEAYTEALQCRLDL 78
           Y+P +   +   +A G +L  V +  GMP  STF RW+  +    L+E Y  A + + D 
Sbjct: 42  YTPTVGLAVCTALAEGMSLRKVCQLPGMPAMSTFLRWLADEQHADLREQYARAREAQADT 101

Query: 79  LAEELLE------EPAPTAEELANPVFYSKMRDRKQRMGT--FLLEKLSNQKYGPRVSVE 130
           LAEE+L+          T +E    V Y  +   K R+    +L  K++ +KYG R++ E
Sbjct: 102 LAEEILQIADDGSNDTYTDDEGRTHVDYDHISRSKLRVDARKWLASKMAPKKYGDRITNE 161

Query: 131 SKHTIDLRPAIE 142
             HT     AIE
Sbjct: 162 --HTGANGGAIE 171


>gi|218695969|ref|YP_002403636.1| putative terminase small subunit [Escherichia coli 55989]
 gi|218352701|emb|CAU98483.1| putative terminase small subunit [Escherichia coli 55989]
          Length = 141

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ Y +A + R D + 
Sbjct: 14  YLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDEFRDKYAKATEARADSIF 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+  E A TA   A  V  +++R   ++   + L +++ +KYG +V+ E
Sbjct: 74  EEIF-EIADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNE 119


>gi|53793590|ref|YP_112490.1| terminase small subunit [Flavobacterium phage 11b]
 gi|53748180|emb|CAH56641.1| terminase small subunit [Flavobacterium phage 11b]
          Length = 160

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 26  FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL-- 83
           F+ IL  + +G++L  VL++ GMP  +TFY+WI  D      YT A + R D+  E +  
Sbjct: 33  FSSILSFIEDGQSLRSVLKREGMPDSTTFYKWIDADENKSIQYTRACETRADVKFESIEK 92

Query: 84  --LEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI 135
             LEEP            + +++  K     + L KL  +KYG ++  E    I
Sbjct: 93  DYLEEPQRDPVSGKIDAGWVQLQRLKIDSKKWELGKLQPKKYGDKIQNEISGAI 146


>gi|298381519|ref|ZP_06991118.1| terminase small subunit [Escherichia coli FVEC1302]
 gi|298278961|gb|EFI20475.1| terminase small subunit [Escherichia coli FVEC1302]
          Length = 141

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ Y +A + R D + 
Sbjct: 14  YLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHEEFRDKYAKATEARADSIF 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+  E A TA   A  V  +++R   ++   + L +++ +KYG +V+ E
Sbjct: 74  EEIF-EIADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNE 119


>gi|325497785|gb|EGC95644.1| putative terminase small subunit [Escherichia fergusonii ECD227]
          Length = 141

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +    ++ Y +A + R D + 
Sbjct: 14  YLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDDFRDKYAKATEARADSVF 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+  E A TA   A  V  +++R   ++   + L +++ +KYG +V+ E
Sbjct: 74  EEIF-EIADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNE 119


>gi|300922508|ref|ZP_07138620.1| hypothetical protein HMPREF9548_00763 [Escherichia coli MS 182-1]
 gi|300421166|gb|EFK04477.1| hypothetical protein HMPREF9548_00763 [Escherichia coli MS 182-1]
 gi|324114095|gb|EGC08068.1| ubiquitin carboxyl-terminal hydrolase 35 [Escherichia fergusonii
           B253]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ Y +A + R D + 
Sbjct: 14  YLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDEFRDKYAKATEARADSIF 73

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+ E      P A E+A        R        + L +++ +KYG +V+ E
Sbjct: 74  EEIFEIADNAIPDAAEVAKARLRVDTR-------KWALARMNPRKYGDKVTNE 119


>gi|240080383|ref|ZP_04724926.1| putative phage associated protein [Neisseria gonorrhoeae FA19]
 gi|268596526|ref|ZP_06130693.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550314|gb|EEZ45333.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 149

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  A + + D  A
Sbjct: 14  YTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFA 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI-DLRP 139
           EE++ E A +A+  +  V  +K++   ++   +   K++ +KYG +  ++ K     +R 
Sbjct: 74  EEII-EIADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKTELDVKSGDGSMRA 129

Query: 140 AIERLREHYKHL 151
           A+    E Y+ +
Sbjct: 130 AVRLDAEEYRKI 141


>gi|240016263|ref|ZP_04722803.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
 gi|240113248|ref|ZP_04727738.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
 gi|240116003|ref|ZP_04730065.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
 gi|240118307|ref|ZP_04732369.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
 gi|240126039|ref|ZP_04738925.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679]
 gi|268599328|ref|ZP_06133495.1| terminase small subunit [Neisseria gonorrhoeae MS11]
 gi|268601670|ref|ZP_06135837.1| gene 1 protein [Neisseria gonorrhoeae PID18]
 gi|268604019|ref|ZP_06138186.1| terminase small subunit [Neisseria gonorrhoeae PID1]
 gi|268684632|ref|ZP_06151494.1| terminase small subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268583459|gb|EEZ48135.1| terminase small subunit [Neisseria gonorrhoeae MS11]
 gi|268585801|gb|EEZ50477.1| gene 1 protein [Neisseria gonorrhoeae PID18]
 gi|268588150|gb|EEZ52826.1| terminase small subunit [Neisseria gonorrhoeae PID1]
 gi|268624916|gb|EEZ57316.1| terminase small subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 149

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  A + + D  A
Sbjct: 14  YTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFA 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI-DLRP 139
           EE++ E A +A+  +  V  +K++   ++   +   K++ +KYG +  ++ K     +R 
Sbjct: 74  EEII-EIADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKTELDVKSGDGSMRA 129

Query: 140 AIERLREHYKHL 151
           A+    E Y+ +
Sbjct: 130 AVRLDAEEYRKI 141


>gi|59800932|ref|YP_207644.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
 gi|239999272|ref|ZP_04719196.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
 gi|240013814|ref|ZP_04720727.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
 gi|240121387|ref|ZP_04734349.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
 gi|240123851|ref|ZP_04736807.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
 gi|254494034|ref|ZP_05107205.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440181|ref|ZP_05793997.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
 gi|268595095|ref|ZP_06129262.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268682475|ref|ZP_06149337.1| terminase small subunit [Neisseria gonorrhoeae PID332]
 gi|291043472|ref|ZP_06569188.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398784|ref|ZP_06642952.1| phage associated protein [Neisseria gonorrhoeae F62]
 gi|59717827|gb|AAW89232.1| hypothetical protein, putative phage associated protein [Neisseria
           gonorrhoeae FA 1090]
 gi|226513074|gb|EEH62419.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548484|gb|EEZ43902.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268622759|gb|EEZ55159.1| terminase small subunit [Neisseria gonorrhoeae PID332]
 gi|291011935|gb|EFE03924.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610786|gb|EFF39893.1| phage associated protein [Neisseria gonorrhoeae F62]
          Length = 149

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  A + + D  A
Sbjct: 14  YTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFA 73

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI-DLRP 139
           EE++ E A +A+  +  V  +K++   ++   +   K++ +KYG +  ++ K     +R 
Sbjct: 74  EEII-EIADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKSELDVKSGDGSMRA 129

Query: 140 AIERLREHYKHL 151
           A+    E Y+ +
Sbjct: 130 AVRLDAEEYRKI 141


>gi|145631713|ref|ZP_01787475.1| hypothetical protein CGSHi22421_00952 [Haemophilus influenzae
           R3021]
 gi|144982656|gb|EDJ90198.1| hypothetical protein CGSHi22421_00952 [Haemophilus influenzae
           R3021]
          Length = 173

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 21/138 (15%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y  E+   I   +A G++L  +  + GMP   T +RW+ ++ +  + Y  A + + D L 
Sbjct: 24  YVKEVADDICQLIAQGESLRKICERPGMPNQRTIFRWLNENDEFCQQYARARENQADFLL 83

Query: 81  EELLEEPAPTAEELANP--VFYSKMRDRKQRMGTFLLEKLSNQKYGPRVS---------- 128
           EE+LE       +LA P  V  +K+R   ++   + + K++ +KYG +V+          
Sbjct: 84  EEMLE-----ISDLATPENVSVAKLRVDARK---WYITKVAPKKYGDKVTQEITGVNGAP 135

Query: 129 VESKHTIDL-RPAIERLR 145
           +E K ++DL R +++ L+
Sbjct: 136 IEQKISMDLSRLSVDELK 153


>gi|260856408|ref|YP_003230299.1| putative terminase small subunit [Escherichia coli O26:H11 str.
           11368]
 gi|331678315|ref|ZP_08378990.1| conserved hypothetical protein [Escherichia coli H591]
 gi|257755057|dbj|BAI26559.1| probable terminase small subunit [Escherichia coli O26:H11 str.
           11368]
 gi|331074775|gb|EGI46095.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 141

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V  + GMP  ++ +RW+ +  + ++ Y +A + R D + 
Sbjct: 14  YMPEVANDICALLSSGESLRKVCERPGMPSKTSVFRWLAEHQEFRDQYAKATETRADSIF 73

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+ E   +  P A E+A        R        + L +++ +KYG +V+ E
Sbjct: 74  EEIFEIADDVIPDAAEVAKARLRVDTR-------KWALARMNPRKYGDKVTNE 119


>gi|261381053|ref|ZP_05985626.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284796086|gb|EFC51433.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 141

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          YS E+   I +++ANG++L  +  + GMP  ST  +W+ ++ +  E Y  A   + D  A
Sbjct: 14 YSDEMAENICEKIANGRSLRSICAEDGMPTTSTVCKWLIENKEFSEQYARARDKQADYFA 73

Query: 81 EELLE 85
          EE++E
Sbjct: 74 EEIIE 78


>gi|126443704|ref|YP_001063349.1| hypothetical protein BURPS668_A2355 [Burkholderia pseudomallei 668]
 gi|167907352|ref|ZP_02494557.1| hypothetical protein BpseN_34300 [Burkholderia pseudomallei NCTC
           13177]
 gi|126223195|gb|ABN86700.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 147

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 8/112 (7%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           + +S  LF  I   + +GK++  V +  GMP   TF +W K+  +LQ+ Y +A   R D 
Sbjct: 16  VEFSQALFDRICALIGDGKSVREVCKGPGMPDRMTFLKWAKRTPELQKQYDDACIDRQDA 75

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           + +++L      A+ + +P     M D ++    + L +++ +++G  VS E
Sbjct: 76  IFDDVLY----IADTVRDPKRAKVMVDARE----WTLARMNRKRFGNHVSNE 119


>gi|312831397|emb|CBY17578.1| unnamed protein product [Escherichia coli LF82]
          Length = 140

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    ++ Y +A + R D + 
Sbjct: 13  YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 72

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+  E A TA   A  V  +++R   ++   + L +++ +KYG +V+ E
Sbjct: 73  EEIF-EIADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNE 118


>gi|205360376|ref|ZP_02682926.2| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349763|gb|EDZ36394.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 142

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    ++ Y +A + R D + 
Sbjct: 15  YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 74

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+  E A TA   A  V  +++R   ++   + L +++ +KYG +V+ E
Sbjct: 75  EEIF-EIADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNE 120


>gi|288562970|pdb|3HEF|A Chain A, Crystal Structure Of The Bacteriophage Sf6 Terminase Small
           Subunit
 gi|288562971|pdb|3HEF|B Chain B, Crystal Structure Of The Bacteriophage Sf6 Terminase Small
           Subunit
          Length = 143

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    ++ Y +A + R D + 
Sbjct: 16  YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 75

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+ E      P A E+A        R        + L +++ +KYG +V+ E
Sbjct: 76  EEIFEIADNAIPDAAEVAKARLRVDTR-------KWALARMNPRKYGDKVTNE 121


>gi|13559865|ref|NP_112075.1| terminase small subunit [Enterobacteria phage HK620]
 gi|41057279|ref|NP_958177.1| gene 1 protein [Enterobacteria phage Sf6]
 gi|168239625|ref|ZP_02664683.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|260868684|ref|YP_003235086.1| putative terminase small subunit [Escherichia coli O111:H- str.
           11128]
 gi|13517601|gb|AAK28890.1|AF335538_42 terminase small subunit [Salmonella phage HK620]
 gi|33334158|gb|AAQ12191.1| gene 1 protein [Shigella phage Sf6]
 gi|197287688|gb|EDY27079.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|257765040|dbj|BAI36535.1| putative terminase small subunit [Escherichia coli O111:H- str.
           11128]
          Length = 140

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    ++ Y +A + R D + 
Sbjct: 13  YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 72

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+ E      P A E+A        R        + L +++ +KYG +V+ E
Sbjct: 73  EEIFEIADNAIPDAAEVAKARLRVDTR-------KWALARMNPRKYGDKVTNE 118


>gi|119386462|ref|YP_917517.1| hypothetical protein Pden_3755 [Paracoccus denitrificans PD1222]
 gi|119377057|gb|ABL71821.1| hypothetical protein Pden_3755 [Paracoccus denitrificans PD1222]
          Length = 133

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 19  IYYSPELFAG----ILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQC 74
           I    E  AG    I + +A G +L  VLRK GMP YST  RW++ D   +  Y  A + 
Sbjct: 3   IKRDAETIAGYKDAICEAIACGDSLAKVLRKKGMPGYSTVIRWLRDDEDFRVDYARAREA 62

Query: 75  RLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN----QKYGPRVSVE 130
           + D  A+++         ++ + V   K+  +  R     L+  +     +KYG ++ ++
Sbjct: 63  QADADADKI--------GDIVDRVLAGKLDPQAARAAIDALKWTAGKRQPKKYGDKLDLD 114

Query: 131 SKHTIDLRPAIERL 144
               I+ R  IER+
Sbjct: 115 ----INGRVQIERV 124


>gi|300935793|ref|ZP_07150756.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300459026|gb|EFK22519.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|323177129|gb|EFZ62719.1| hypothetical protein ECOK1180_4497 [Escherichia coli 1180]
          Length = 142

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    ++ Y +A + R D + 
Sbjct: 15  YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 74

Query: 81  EELLE---EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE+ E      P A E+A        R        + L +++ +KYG +V+ E
Sbjct: 75  EEIFEIADNAIPDAAEVAKARLRVDTR-------KWALARMNPRKYGDKVTNE 120


>gi|332343006|gb|AEE56340.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 161

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ E    I + VA+G+++  + +  GMP  ST  +W +   +  + Y  A +   ++LA
Sbjct: 25  YTEEKALEICELVADGQSVNKISKMPGMPTRSTILKWFRDVPEFSDMYMRAKEIGFEVLA 84

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGT--FLLEKLSNQKYGPRVSVE 130
           +E+L+     A++  N V   ++R  +  + T  +LL KL  +KYG RV+ E
Sbjct: 85  DEILD----IADDAKN-VDKDQLRRHQLMIETRKWLLAKLQPRKYGERVTQE 131


>gi|300935518|ref|ZP_07150512.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300459317|gb|EFK22810.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 171

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ E    I + VA+G+++  + +  GMP  ST  +W +   +  + Y  A +   ++LA
Sbjct: 25  YTEEKALEICELVADGQSVNKISKMPGMPTRSTILKWFRDVPEFSDMYMRAKEIGFEVLA 84

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGT--FLLEKLSNQKYGPRVSVE 130
           +E+L+     A++  N V   ++R  +  + T  +LL KL  +KYG RV+ E
Sbjct: 85  DEILD----IADDAKN-VDKDQLRRHQLMIETRKWLLAKLQPRKYGERVTQE 131


>gi|41179387|ref|NP_958695.1| Bbp26 [Bordetella phage BPP-1]
 gi|45569519|ref|NP_996588.1| hypothetical protein BMP-1p25 [Bordetella phage BMP-1]
 gi|45580770|ref|NP_996636.1| hypothetical protein BIP-1p25 [Bordetella phage BIP-1]
 gi|40950126|gb|AAR97692.1| Bbp26 [Bordetella phage BPP-1]
          Length = 194

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A+K  R K    Y +  +   I D++A+G+ L  + R   MP + T Y WI+   +  E 
Sbjct: 16  ARKTARMKNASTY-TEAIATEICDRIADGEPLRQICRDEHMPAWRTVYHWIEARPEFAER 74

Query: 68  YTEALQCRLDLLAEELLE--EPAPTAEEL--ANPVFYSKMRD----RKQRMGTF--LLEK 117
              A +   D +AEE LE      T EE   ++  +  K  D    RK ++ T   LL K
Sbjct: 75  MERARRAGFDAIAEEALEIANTPQTGEETEESDDGYKVKRGDMLGHRKLQVETRLKLLAK 134

Query: 118 LSNQKYGPRVSVE 130
               KYG + S+E
Sbjct: 135 WHPTKYGDKTSME 147


>gi|218782398|ref|YP_002433716.1| hypothetical protein Dalk_4570 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763782|gb|ACL06248.1| hypothetical protein Dalk_4570 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD--LKLQEAYTEALQCRLDL 78
           Y+ E+   I +++A+G+++  +     MP  +  YRW+      K +E YT A + + D 
Sbjct: 9   YTDEIAETICERIASGESVQSITSDEDMPSSAMVYRWLADARYSKFREMYTRARERQADF 68

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI 135
            A+E++      A+   NP   +     +Q    +   KL  +KYG R+ V  + T+
Sbjct: 69  FADEII----TIADTEDNPKKAAVRVQARQ----WAASKLKPRKYGDRIDVHQQGTV 117


>gi|187476924|ref|YP_784948.1| phage terminase small subunit [Bordetella avium 197N]
 gi|115421510|emb|CAJ48019.1| Putative phage terminase small subunit [Bordetella avium 197N]
          Length = 170

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 10/120 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+  +   I D++A+G+ L  + R   MP + T Y WI+   K  E    A +   D +A
Sbjct: 7   YTEAIATEICDRIADGEPLRQICRDQHMPAWRTVYHWIEARSKFAERMERARRVGFDAIA 66

Query: 81  EELLE---EPAPTAE-ELANPVFYSKMRD----RKQRMGTF--LLEKLSNQKYGPRVSVE 130
           EE LE    P    E E     F  K  D    RK ++ T   LL K    KYG + S+E
Sbjct: 67  EEALEIANTPQIGEETEQEGSKFRVKRGDMLGHRKLQVETRLKLLAKWHPTKYGDKTSME 126


>gi|254497230|ref|ZP_05110039.1| putative phage associated protein [Legionella drancourtii LLAP12]
 gi|254353554|gb|EET12280.1| putative phage associated protein [Legionella drancourtii LLAP12]
          Length = 157

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 10/125 (8%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGM--PKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+ EL   I + +A+      VL K  M  P   T + W+KK  +  E Y +A  C+++L
Sbjct: 14  YNSELAEEICNVIASTSKGTKVLCKENMHWPCQDTLFAWLKKYPEFSEQYAQAKICQIEL 73

Query: 79  LAEELLEEPAPTA-----EELANPVFYSKMRDRKQ-RMGT--FLLEKLSNQKYGPRVSVE 130
           L +E+LE     +     +E   PV  + + +R + ++ T  +L  KL  + YG ++ +E
Sbjct: 74  LIDEILEIADDESNDCFIDEDGKPVSNNSVVNRARLKIDTRKWLASKLVPKVYGNKIGIE 133

Query: 131 SKHTI 135
           S  ++
Sbjct: 134 SDSSM 138


>gi|239835387|ref|YP_002956059.1| hypothetical protein DMR_p1_00530 [Desulfovibrio magneticus RS-1]
 gi|239794478|dbj|BAH73469.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           +S E+   +   +  G+ L  +    GMP  +T Y W+ K    QE Y  A + + D+  
Sbjct: 20  FSQEVADAVCQGIMEGRGLRSICADPGMPGPATVYSWLTKYASFQEQYALAREVQADVYF 79

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           +E++      A+   +P       D ++    +   KL  ++YG R+ VE +  + +
Sbjct: 80  DEVVS----IADNEPDPQIARNRIDARK----WAASKLRPKRYGDRLEVEHQGGVGM 128


>gi|116253679|ref|YP_769517.1| hypothetical protein RL3939 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258327|emb|CAK09429.1| putative phage-related protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 23/142 (16%)

Query: 29  ILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLDLLAEELLEE 86
           I +++A+G++L  + R   MP  ST   W+  D K   +  Y +A + + D   +E++E 
Sbjct: 16  ICERIADGESLRSICRDDAMPAKSTVLAWLADDDKTAFRTKYAQAREIQADGFVDEMVE- 74

Query: 87  PAPTAEELANPVFYSKMRD--------------RKQ-RMGT--FLLEKLSNQKYGPRVSV 129
               A++  N     K  D              R Q R+GT  ++ EKL  +KYG +V +
Sbjct: 75  ---IADDGTNDWMEKKNADGETTGWQENGEAIRRSQLRIGTRQWIAEKLKPKKYGAKVEL 131

Query: 130 ESKHTIDLRPAIERLREHYKHL 151
           E   T ++   +E +    + L
Sbjct: 132 EHGVTGEVSQLLEAINGKTRGL 153


>gi|309379924|emb|CBX21335.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           YS E    I + +A G +L  +     MP   T +RW+ +    QE Y  A + + D  A
Sbjct: 14  YSQETADKICELIARGMSLRAICTSADMPAGGTVHRWLAEHQDFQEQYARAREEQADGFA 73

Query: 81  EELL---EEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           +E++   +  AP   E+A        R  K         KL+ +KYG ++ +++    D+
Sbjct: 74  DEIIDIADSVAPETGEVAKAKLQIDARKWK-------AAKLAPKKYGEKLELDA----DM 122

Query: 138 RPAIE 142
           R  +E
Sbjct: 123 RVKVE 127


>gi|197104489|ref|YP_002129866.1| hypothetical protein PHZ_c1023 [Phenylobacterium zucineum HLK1]
 gi|196477909|gb|ACG77437.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 221

 Score = 42.0 bits (97), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 3  NLVKKAKKAVRAKKG--------CIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTF 54
           L ++A +A R + G        C Y   E    I  ++  G+AL  + R   MP  ST 
Sbjct: 5  GLFRRAIEAARIEAGRGSAIGRPCGYCR-ETAEAIFVRLCGGEALSAICRDPQMPAASTV 63

Query: 55 YRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85
          Y W+ ++ +  EAY  A + + D LA E  E
Sbjct: 64 YAWLAREPQFAEAYRLAREVQADALAAEGWE 94


>gi|329119004|ref|ZP_08247698.1| terminase small subunit [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464877|gb|EGF11168.1| terminase small subunit [Neisseria bacilliformis ATCC BAA-1200]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           YS  L   I +++A G++L  V     MP  ST ++W+ ++ +  E Y  A + + D  A
Sbjct: 31  YSKGLADRICERIARGESLRAVCSDGDMPSASTVHKWLAENQEFSEQYAHAREEQADHFA 90

Query: 81  EELL---EEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           ++++   +E  P +  +A        R        +   KL+ +KYG ++ +      D+
Sbjct: 91  QDIIRIADEVEPESAAVAKAKLQIDAR-------KWTAAKLAPKKYGDKIDLSG----DM 139

Query: 138 RPAIE 142
           R  +E
Sbjct: 140 RVQVE 144


>gi|326564855|gb|EGE15061.1| putative phage associated protein [Moraxella catarrhalis
          103P14B1]
          Length = 139

 Score = 39.7 bits (91), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          Y+ +L A  L +VA G+++  V     MP  +T Y W+  +    + Y  A + R D   
Sbjct: 14 YNEDLVAEFLYRVAKGRSVASVCSDDDMPHRATIYEWLAHNSDFSDRYARASEQRADQYF 73

Query: 81 EELL 84
          +E+L
Sbjct: 74 DEML 77


>gi|167750592|ref|ZP_02422719.1| hypothetical protein EUBSIR_01569 [Eubacterium siraeum DSM 15702]
 gi|167656518|gb|EDS00648.1| hypothetical protein EUBSIR_01569 [Eubacterium siraeum DSM 15702]
          Length = 379

 Score = 38.5 bits (88), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          Y+ E    ++D+V +G+   H+L   G+PK STFY W++     QE    A + ++D+  
Sbjct: 4  YTQEEKQAVIDRVISGEPSAHILADTGIPK-STFYSWLR---IYQEEQNAANRRKVDIRN 59

Query: 81 EELLEEPAPTAEELA 95
            LLE      E + 
Sbjct: 60 FHLLENKVARLESIV 74


>gi|160897384|ref|YP_001562966.1| putative terminase small subunit protein [Delftia acidovorans
          SPH-1]
 gi|160362968|gb|ABX34581.1| putative terminase small subunit protein [Delftia acidovorans
          SPH-1]
          Length = 157

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK--DLKLQEAYTEALQCRLDL 78
          ++ ++   + D++A G++L  +     MP  +T  RW+ K  +   +E Y  A   + D 
Sbjct: 7  FNEDIATKLCDRIAAGESLRKICTDPKMPSMATVMRWLGKPENAAFREQYACARDAQADK 66

Query: 79 LAEELLE 85
          L EE+LE
Sbjct: 67 LVEEMLE 73


>gi|90416803|ref|ZP_01224733.1| hypothetical protein GB2207_04109 [marine gamma proteobacterium
           HTCC2207]
 gi|90331556|gb|EAS46792.1| hypothetical protein GB2207_04109 [marine gamma proteobacterium
           HTCC2207]
          Length = 248

 Score = 36.6 bits (83), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 69  TEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLS--NQKYGPR 126
           T A+Q +L  L + +  +  PTA+EL    FY+  + R +   TF LE +S    K+G +
Sbjct: 82  TLAMQAKLAGLTKNVTTQRLPTADELK--TFYTLNQQRYRNPSTFWLEVISFATAKHGGQ 139

Query: 127 VSVESKHTIDL-RPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQS 179
           V   ++  +   +P +  LR+ Y  +  I+ E +  +S    L  +E  I+  S
Sbjct: 140 VFERAEQELKTGQPPVGDLRDQYTAISTIELETLYGQSFVDSLMEIEQPISALS 193


>gi|154412501|ref|XP_001579283.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121913488|gb|EAY18297.1| hypothetical protein TVAG_254090 [Trichomonas vaginalis G3]
          Length = 807

 Score = 35.8 bits (81), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 13  RAKKGCIYYSPELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71
           RA +G I   P+  A  +D V  G  A+G  L K    + +TFYR+++ +  + + Y + 
Sbjct: 434 RALEGAILKQPQKKA--VDIVRTGLSAVGDYLIKKKSSEVATFYRYVQDNCHVCDGYVQ- 490

Query: 72  LQCRLDLLAEELLEE------PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
                  L +ELLEE        P  EE A P+   ++++ KQ++  + +  L  +  G
Sbjct: 491 ------FLVKELLEEREKYTKQTPKQEEKAKPIQKQRIQEIKQKVPEYDIASLEEEIEG 543


>gi|260949161|ref|XP_002618877.1| hypothetical protein CLUG_00036 [Clavispora lusitaniae ATCC 42720]
 gi|238846449|gb|EEQ35913.1| hypothetical protein CLUG_00036 [Clavispora lusitaniae ATCC 42720]
          Length = 1889

 Score = 35.8 bits (81), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 32  QVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTA 91
           Q +N  + G +   +      +FY+ I   +K    ++ A++C+++ L E L + P+ + 
Sbjct: 689 QSSNTLSCGEIQGTIDFKTLLSFYQGITSFVK---QFSAAIKCKVNALPESLADSPSQSP 745

Query: 92  EELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVES 131
           +  +     S +  +  R G F  +   +  +G + S+ S
Sbjct: 746 KAFSTAGLASSIYSKHSRFGRFKAKNRDHFHFGEQRSISS 785


>gi|224438834|ref|ZP_03659668.1| hypothetical protein HcinC1_12185 [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 33  VANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR-LDLLAEE--LLEEPAP 89
           V++G+++ ++  + G   Y++   W+   L + +   + +QC+    L EE  ++E  A 
Sbjct: 89  VSDGESIKYIYIQ-GFEYYNS---WVTSSLSMHQDVKQHIQCKPFKDLKEEYAIIENIAF 144

Query: 90  TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPA 140
             +E        K R +  RMG    +K  +Q +   ++ +S H IDL+ +
Sbjct: 145 NNKEYIGDEMIVKERRKLNRMGYATSQKYISQVFKEAINAKSHHYIDLKES 195


>gi|313145155|ref|ZP_07807348.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313130186|gb|EFR47803.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 203

 Score = 34.7 bits (78), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 33  VANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR-LDLLAEE--LLEEPAP 89
           V++G+++ ++  + G   Y++   W+   L + +   + +QC+    L EE  ++E  A 
Sbjct: 96  VSDGESIKYIYIQ-GFEYYNS---WVTSSLSMHQDVKQHIQCKPFKDLKEEYAIIENIAF 151

Query: 90  TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPA 140
             +E        K R +  RMG    +K  +Q +   ++ +S H IDL+ +
Sbjct: 152 NNKEYIGDEMIVKERRKLNRMGYATSQKYISQVFKEAINAKSHHYIDLKES 202


>gi|188575220|ref|YP_001912149.1| isrso16-transposase orfa protein [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188519672|gb|ACD57617.1| isrso16-transposase orfa protein [Xanthomonas oryzae pv. oryzae
          PXO99A]
          Length = 88

 Score = 34.3 bits (77), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          ++ E  A  L Q   G A+G + RK+G+ + +TFY W KKD  L  +  +    RL LL 
Sbjct: 6  FTEEQIAYALKQAKLGMAVGEICRKLGIAE-ATFYVWRKKDGGLGPSELK----RLRLLE 60

Query: 81 EE 82
          EE
Sbjct: 61 EE 62


>gi|322488501|emb|CBZ23747.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 739

 Score = 34.3 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLE-KLSNQKY 123
           +EA   + + R ++   E + E A TA + A  +F    R  + R+   + E K+     
Sbjct: 598 EEARVVSEKLRREIADLERVFEKASTASDAAETLF----RQTEDRVTNSMTELKMKRTNM 653

Query: 124 GPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERI 159
             R+ +E   T  L   +E++R   KHL+  ++ER+
Sbjct: 654 DARIQLEKDRTDRLNRELEKIRRQIKHLEEAENERL 689


>gi|91202301|emb|CAJ75361.1| strongly similar to ATPA gene encoding subunit alpha of ATP
           synthase [Candidatus Kuenenia stuttgartiensis]
          Length = 513

 Score = 34.3 bits (77), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 17  GCIYYSPELFA-GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ-- 73
           G IY SPEL   GI+  V  G+++  V  K   P Y    R +  DL+L  A  E L+  
Sbjct: 349 GQIYLSPELAQKGIMPAVNVGRSVSRVGGKAQFPSY----RMVASDLRLSYAQFEELERF 404

Query: 74  ----CRLDLLAEELLEEPAPTAEELANPVF 99
                RLD    +++E      E L  P F
Sbjct: 405 ARFSTRLDESTRKIIERGKRVREILKQPQF 434


>gi|58583518|ref|YP_202534.1| transposase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58428112|gb|AAW77149.1| putative truncated transposase [Xanthomonas oryzae pv. oryzae
          KACC10331]
          Length = 89

 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          ++ E  A  L Q   G A+G + RK+G+ + +TFY W KKD  L  +  +    RL LL 
Sbjct: 6  FTEEQIAYALKQAKLGMAVGEICRKLGIAE-ATFYVWHKKDGGLGPSELK----RLRLLE 60

Query: 81 EE 82
          EE
Sbjct: 61 EE 62


>gi|218461767|ref|ZP_03501858.1| putative terminase small subunit protein [Rhizobium etli Kim 5]
          Length = 146

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 19/127 (14%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           +S  L   I D++A+ ++L  + R   MP  ST   W+  + K   A+        ++LA
Sbjct: 7   FSQALAEKICDRIADRESLRSICRDDAMPAKSTVLSWLADEDKA--AFRARYALAREILA 64

Query: 81  EELLEEPAPTAEELANPVFYSK---------------MRDRKQRMGT--FLLEKLSNQKY 123
           +  ++E    A++ +N     K               +R  + R+ T  ++ EKL  +KY
Sbjct: 65  DGFVDELVEIADDSSNDWIEKKNAAGETTGWQENGEAIRRSQLRIATRQWVAEKLRPKKY 124

Query: 124 GPRVSVE 130
           G +V  E
Sbjct: 125 GAKVEPE 131


>gi|84625334|ref|YP_452706.1| transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369274|dbj|BAE70432.1| transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 88

 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
          ++ E  A  L Q   G A+G + RK+G+ + +TFY W KKD  L  +  +    RL LL 
Sbjct: 6  FTEEQIAYALKQAKLGMAVGEICRKLGIAE-ATFYVWHKKDGGLGPSELK----RLRLLE 60

Query: 81 EE 82
          EE
Sbjct: 61 EE 62


Searching..................................................done


Results from round 2




>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040865|gb|ACT57661.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score =  244 bits (622), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
           MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK
Sbjct: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60

Query: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
           DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN
Sbjct: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120

Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180
           QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI
Sbjct: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180

Query: 181 IEHNN 185
           IEHNN
Sbjct: 181 IEHNN 185


>gi|315122903|ref|YP_004063392.1| hypothetical protein CKC_05795 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496305|gb|ADR52904.1| hypothetical protein CKC_05795 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 180

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +K   K  + +K  + YS  L   I+ ++ANG+ +  VL+   MP    FY W+ +  + 
Sbjct: 1   MKANSKKRKPQKPTVKYSQSLTKEIITRIANGETMQAVLKYPNMPTADAFYDWLARYPEH 60

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           +E+Y +A   +L+L+ EE+  EP PT  ELANPVFYSKMRDRKQ+   +L E+L+ Q YG
Sbjct: 61  RESYNQARVKKLELMVEEVTNEPEPTEHELANPVFYSKMRDRKQKSVLWLAERLNRQIYG 120

Query: 125 PRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSIIE 182
             ++VE KHTIDL+P + ++ E  KH +   + R+  ++TEKPLE+ + S A+QS ++
Sbjct: 121 NHMTVEQKHTIDLKPVLAKIEERRKHQQANKAMRVL-EATEKPLELTKLSKAKQSTMK 177


>gi|315121941|ref|YP_004062430.1| hypothetical protein CKC_00955 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495343|gb|ADR51942.1| hypothetical protein CKC_00955 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 172

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 4/169 (2%)

Query: 16  KGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD-LKLQEAYTEALQC 74
           +    Y+ E    IL  +A+G  L    +  G+    TF+ W+++D   L++ Y +A   
Sbjct: 3   RPFTTYTLERTNKILASIASGMTLAKSCKLHGVL-VMTFFAWLERDFDDLKKRYEQAKIS 61

Query: 75  RLDLLAEELLE-EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKH 133
            ++ L++++ +   AP +EE        K R+ + +   + LEK     YG  ++VE KH
Sbjct: 62  HMEHLSDKIADTIEAPLSEEEKKYPVSFKRRELQMKRLQWELEKRYRNVYGNHMTVEQKH 121

Query: 134 TIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSIIE 182
           TIDL+P + ++ E  KH +   + R+  ++TEKPLE  + S  EQS ++
Sbjct: 122 TIDLKPVLAKIEERRKHQQANKAMRVI-EATEKPLECRKLSKDEQSTMK 169


>gi|156934896|ref|YP_001438812.1| hypothetical protein ESA_02744 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533150|gb|ABU77976.1| hypothetical protein ESA_02744 [Cronobacter sakazakii ATCC BAA-894]
          Length = 150

 Score =  160 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 13/145 (8%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    K  R       Y PE+ A I   +A+G++L  V  + GMP  ST +RW+ +  + 
Sbjct: 3   MATESKTGRPS----DYLPEVAADICSLLADGESLRKVCERPGMPNKSTVFRWLAQHEEF 58

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ +     AEE A  V  +++R   ++   + L +++ +KYG
Sbjct: 59  RDQYAKATETRADAIFEEMFDIADTVAEE-AAAVGKARLRIDTRK---WALARMNPKKYG 114

Query: 125 PRVSVESKH-----TIDLRPAIERL 144
            +VS E  H     T+  +P   RL
Sbjct: 115 DKVSQEIDHKSSDGTMATKPTTIRL 139


>gi|260596961|ref|YP_003209532.1| hypothetical protein CTU_11690 [Cronobacter turicensis z3032]
 gi|260216138|emb|CBA28941.1| hypothetical protein CTU_11690 [Cronobacter turicensis z3032]
          Length = 164

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 17/163 (10%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    K  R       Y PE+ AGI   +A+G++L  V  + GMP  ST +RW+ +  + 
Sbjct: 1   MATESKTGRPS----EYLPEVAAGICSLLADGESLRKVCDRPGMPNKSTVFRWLAQHEEF 56

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ +     AEE A  V  +++R   ++   + L +++ +KYG
Sbjct: 57  RDQYAKATETRADAIFEEMFDIADTVAEE-AAAVGKARLRIDTRK---WALARMNPKKYG 112

Query: 125 PRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKP 167
            +VS E  H         +  +     +P   + +P + T +P
Sbjct: 113 DKVSQEIDH---------KSSDGSMTPQPTTIQLVPVEPTHEP 146


>gi|317120681|gb|ADV02504.1| hypothetical protein SC1_gp120 [Liberibacter phage SC1]
 gi|317120723|gb|ADV02545.1| hypothetical protein SC2_gp120 [Liberibacter phage SC2]
 gi|317120784|gb|ADV02605.1| hypothetical protein SC2_gp120 [Candidatus Liberibacter asiaticus]
 gi|317120825|gb|ADV02646.1| hypothetical protein SC1_gp120 [Candidatus Liberibacter asiaticus]
          Length = 171

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD-LKLQEAYTEALQCRLDL 78
            Y+ E    IL   + G +L    +K G+   S F+ W+K+D   L++ Y +A Q  ++ 
Sbjct: 14  KYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEH 72

Query: 79  LAEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           L+E L     AP  EE  +     K+R+ + +   + LEK     YG  VSVE KHTIDL
Sbjct: 73  LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDL 132

Query: 138 RPAIERLRE--HYKHLKPIDSERIPHKSTEKPLEIVESSI 175
           +P ++R++     K LKP+ +     K TEKPLE+ + + 
Sbjct: 133 KPLMDRVQHSIQSKGLKPVKA---LDKQTEKPLELPKLTK 169


>gi|218695969|ref|YP_002403636.1| putative terminase small subunit [Escherichia coli 55989]
 gi|218352701|emb|CAU98483.1| putative terminase small subunit [Escherichia coli 55989]
          Length = 141

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A +     +    Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ 
Sbjct: 2   ATEKKNVGRPS-DYLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDEFRDK 60

Query: 68  YTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           Y +A + R D + EE+ E  A TA   A  V  +++R   ++   + L +++ +KYG +V
Sbjct: 61  YAKATEARADSIFEEIFE-IADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKV 116

Query: 128 SVESKHTIDLRPAIE 142
           + E          IE
Sbjct: 117 TNELVGKDGGAIQIE 131


>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040894|gb|ACT57690.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD-LKLQEAYTEALQCRLDL 78
            Y+ E    IL   + G +L    +K G+   S F+ W+K+D   L++ Y +A Q  ++ 
Sbjct: 5   KYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEH 63

Query: 79  LAEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
           L+E L     AP  EE  +     K+R+ + +   + LEK     YG  VSVE KHTIDL
Sbjct: 64  LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDL 123

Query: 138 RPAIERLRE--HYKHLKPIDSERIPHKSTEKPLEIVESSI 175
           +P ++R++     K LKP+ +     K TEKPLE+ + + 
Sbjct: 124 KPLMDRVQHSIQSKGLKPVKA---LDKQTEKPLELPKLTK 160


>gi|260856408|ref|YP_003230299.1| putative terminase small subunit [Escherichia coli O26:H11 str.
           11368]
 gi|331678315|ref|ZP_08378990.1| conserved hypothetical protein [Escherichia coli H591]
 gi|257755057|dbj|BAI26559.1| probable terminase small subunit [Escherichia coli O26:H11 str.
           11368]
 gi|331074775|gb|EGI46095.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 141

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A +  +  +    Y PE+   I   +++G++L  V  + GMP  ++ +RW+ +  + ++ 
Sbjct: 2   ATEKKKGGRPS-DYMPEVANDICALLSSGESLRKVCERPGMPSKTSVFRWLAEHQEFRDQ 60

Query: 68  YTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           Y +A + R D + EE+ E       + A  V  +++R   ++   + L +++ +KYG +V
Sbjct: 61  YAKATETRADSIFEEIFEIADDVIPD-AAEVAKARLRVDTRK---WALARMNPRKYGDKV 116

Query: 128 SVESKHTIDLRPAIE 142
           + E          IE
Sbjct: 117 TNELVGKDGGAIQIE 131


>gi|298381519|ref|ZP_06991118.1| terminase small subunit [Escherichia coli FVEC1302]
 gi|298278961|gb|EFI20475.1| terminase small subunit [Escherichia coli FVEC1302]
          Length = 141

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A +     +    Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ 
Sbjct: 2   ATEKKNVGRPS-DYLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHEEFRDK 60

Query: 68  YTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           Y +A + R D + EE+ E  A TA   A  V  +++R   ++   + L +++ +KYG +V
Sbjct: 61  YAKATEARADSIFEEIFE-IADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKV 116

Query: 128 SVESKHTIDLRPAIE 142
           + E          IE
Sbjct: 117 TNELVGKDGGAIQIE 131


>gi|300922508|ref|ZP_07138620.1| hypothetical protein HMPREF9548_00763 [Escherichia coli MS 182-1]
 gi|300421166|gb|EFK04477.1| hypothetical protein HMPREF9548_00763 [Escherichia coli MS 182-1]
 gi|324114095|gb|EGC08068.1| ubiquitin carboxyl-terminal hydrolase 35 [Escherichia fergusonii
           B253]
          Length = 141

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A +     +    Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +  + ++ 
Sbjct: 2   ATEKKNVGRPS-DYLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDEFRDK 60

Query: 68  YTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           Y +A + R D + EE+ E  A  A   A  V  +++R   ++   + L +++ +KYG +V
Sbjct: 61  YAKATEARADSIFEEIFE-IADNAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKV 116

Query: 128 SVESKHTIDLRPAIE 142
           + E          IE
Sbjct: 117 TNELVGKDGGAIQIE 131


>gi|325497785|gb|EGC95644.1| putative terminase small subunit [Escherichia fergusonii ECD227]
          Length = 141

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           A +     +    Y PE+   I   +A+G++L  V ++ GMP  +T +RW+ +    ++ 
Sbjct: 2   ATEKKNVGRPS-DYLPEVADDICALLASGESLVKVCKRPGMPAKATVFRWLSEHDDFRDK 60

Query: 68  YTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           Y +A + R D + EE+ E  A TA   A  V  +++R   ++   + L +++ +KYG +V
Sbjct: 61  YAKATEARADSVFEEIFE-IADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKV 116

Query: 128 SVESKHTIDLRPAIE 142
           + E          IE
Sbjct: 117 TNELVGKDGGAIQIE 131


>gi|251791567|ref|YP_003006288.1| hypothetical protein Dd1591_4010 [Dickeya zeae Ech1591]
 gi|247540188|gb|ACT08809.1| hypothetical protein Dd1591_4010 [Dickeya zeae Ech1591]
          Length = 245

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 10  KAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69
           K  R  +    Y PE+   I   +A+G++L  V R  GMP  +T +RW+ ++   ++ Y 
Sbjct: 96  KQNRTGRPS-DYMPEVADDICTLLADGESLRDVCRHPGMPNKATVFRWLAENEVFRDQYA 154

Query: 70  EALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSV 129
           +A   R D++ +E+++  A + E  A  V  S+++   ++   ++L +++ +KYG R++ 
Sbjct: 155 KATDVRADVIFDEIID-IADSTEADAAEVAKSRLKIDARK---WVLSRMAPKKYGERITQ 210

Query: 130 ESKHTIDLRPAIE 142
           E     D  P ++
Sbjct: 211 EVTGK-DGGPVVQ 222


>gi|268589861|ref|ZP_06124082.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
 gi|291314844|gb|EFE55297.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
          Length = 140

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 9   KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68
            K  +  +    Y PE    I  ++A G++L  V  + GMP  +T +RW+ ++ + ++ Y
Sbjct: 2   TKKNKGGRPS-DYMPETAHDICAKLAEGESLRSVCNRQGMPSKATVFRWLSENAEFRDQY 60

Query: 69  TEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVS 128
            +A + R D L EE+LE       + A  V  +K+R   ++   + L ++S +KYG +V+
Sbjct: 61  AKATEQRADALFEEMLEIADDVLPDSA-EVAKAKLRIDTRK---WSLARMSPKKYGDKVT 116

Query: 129 VESKHTIDLRPAIE 142
            E          IE
Sbjct: 117 QEITGADGGAIQIE 130


>gi|254240164|ref|ZP_04933486.1| hypothetical protein PA2G_00805 [Pseudomonas aeruginosa 2192]
 gi|126193542|gb|EAZ57605.1| hypothetical protein PA2G_00805 [Pseudomonas aeruginosa 2192]
          Length = 188

 Score =  137 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 7   KAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIK--KDLKL 64
           K        +    Y+P +   +   +A G +L  V +  GMP  STF RW+   +   L
Sbjct: 29  KTAAKRPPGRPS-RYTPTVGLAVCTALAEGMSLRKVCQLPGMPAMSTFLRWLADEQHADL 87

Query: 65  QEAYTEALQCRLDLLAEELLEEPAP------TAEELANPVFYSKMRDRKQRMG--TFLLE 116
           +E Y  A + + D LAEE+L+          T +E    V Y  +   K R+    +L  
Sbjct: 88  REQYARAREAQADTLAEEILQIADDGSNDTYTDDEGRTHVDYDHISRSKLRVDARKWLAS 147

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIE 142
           K++ +KYG R++ E  HT     AIE
Sbjct: 148 KMAPKKYGDRITNE--HTGANGGAIE 171


>gi|145631713|ref|ZP_01787475.1| hypothetical protein CGSHi22421_00952 [Haemophilus influenzae
           R3021]
 gi|144982656|gb|EDJ90198.1| hypothetical protein CGSHi22421_00952 [Haemophilus influenzae
           R3021]
          Length = 173

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             +  +    Y  E+   I   +A G++L  +  + GMP   T +RW+ ++ +  + Y  
Sbjct: 15  KKKTGRPS-SYVKEVADDICQLIAQGESLRKICERPGMPNQRTIFRWLNENDEFCQQYAR 73

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           A + + D L EE+LE       E    V  +K+R   ++   + + K++ +KYG +V+ E
Sbjct: 74  ARENQADFLLEEMLEISDLATPE---NVSVAKLRVDARK---WYITKVAPKKYGDKVTQE 127

Query: 131 SKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIA 176
               ++  P  +++      L  +D  ++  +   K     +SS  
Sbjct: 128 ITG-VNGAPIEQKISMDLSRL-SVDELKLLRELKSKATGCDDSSKE 171


>gi|288562970|pdb|3HEF|A Chain A, Crystal Structure Of The Bacteriophage Sf6 Terminase Small
           Subunit
 gi|288562971|pdb|3HEF|B Chain B, Crystal Structure Of The Bacteriophage Sf6 Terminase Small
           Subunit
          Length = 143

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    KA R       Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    
Sbjct: 4   MATEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDF 59

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ E  A  A   A  V  +++R   ++   + L +++ +KYG
Sbjct: 60  RDKYAKATEARADSIFEEIFE-IADNAIPDAAEVAKARLRVDTRK---WALARMNPRKYG 115

Query: 125 PRVSVESKHTIDLRPAIE 142
            +V+ E          IE
Sbjct: 116 DKVTNELVGKDGGAIQIE 133


>gi|205360376|ref|ZP_02682926.2| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349763|gb|EDZ36394.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 142

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    KA R       Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    
Sbjct: 3   MATEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDF 58

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ E  A TA   A  V  +++R   ++   + L +++ +KYG
Sbjct: 59  RDKYAKATEARADSIFEEIFE-IADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYG 114

Query: 125 PRVSVESKHTIDLRPAIE 142
            +V+ E          IE
Sbjct: 115 DKVTNELVGKDGGAIQIE 132


>gi|312831397|emb|CBY17578.1| unnamed protein product [Escherichia coli LF82]
          Length = 140

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    KA R       Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    
Sbjct: 1   MATEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDF 56

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ E  A TA   A  V  +++R   ++   + L +++ +KYG
Sbjct: 57  RDKYAKATEARADSIFEEIFE-IADTAIPDAAEVAKARLRVDTRK---WALARMNPRKYG 112

Query: 125 PRVSVESKHTIDLRPAIE 142
            +V+ E          IE
Sbjct: 113 DKVTNELVGKDGGAIQIE 130


>gi|300935793|ref|ZP_07150756.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300459026|gb|EFK22519.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|323177129|gb|EFZ62719.1| hypothetical protein ECOK1180_4497 [Escherichia coli 1180]
          Length = 142

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    KA R       Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    
Sbjct: 3   MATEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDF 58

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ E  A  A   A  V  +++R   ++   + L +++ +KYG
Sbjct: 59  RDKYAKATEARADSIFEEIFE-IADNAIPDAAEVAKARLRVDTRK---WALARMNPRKYG 114

Query: 125 PRVSVESKHTIDLRPAIE 142
            +V+ E          IE
Sbjct: 115 DKVTNELVGKDGGAIQIE 132


>gi|13559865|ref|NP_112075.1| terminase small subunit [Enterobacteria phage HK620]
 gi|41057279|ref|NP_958177.1| gene 1 protein [Enterobacteria phage Sf6]
 gi|168239625|ref|ZP_02664683.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|260868684|ref|YP_003235086.1| putative terminase small subunit [Escherichia coli O111:H- str.
           11128]
 gi|13517601|gb|AAK28890.1|AF335538_42 terminase small subunit [Salmonella phage HK620]
 gi|33334158|gb|AAQ12191.1| gene 1 protein [Shigella phage Sf6]
 gi|197287688|gb|EDY27079.1| terminase small subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|257765040|dbj|BAI36535.1| putative terminase small subunit [Escherichia coli O111:H- str.
           11128]
          Length = 140

 Score =  134 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           +    KA R       Y PE+   I   +++G++L  V ++ GMP  ST +RW+ K    
Sbjct: 1   MATEPKAGRPS----DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDF 56

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
           ++ Y +A + R D + EE+ E  A  A   A  V  +++R   ++   + L +++ +KYG
Sbjct: 57  RDKYAKATEARADSIFEEIFE-IADNAIPDAAEVAKARLRVDTRK---WALARMNPRKYG 112

Query: 125 PRVSVESKHTIDLRPAIE 142
            +V+ E          IE
Sbjct: 113 DKVTNELVGKDGGAIQIE 130


>gi|53793590|ref|YP_112490.1| terminase small subunit [Flavobacterium phage 11b]
 gi|53748180|emb|CAH56641.1| terminase small subunit [Flavobacterium phage 11b]
          Length = 160

 Score =  131 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 23  PELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEE 82
            + F+ IL  + +G++L  VL++ GMP  +TFY+WI  D      YT A + R D+  E 
Sbjct: 30  EKTFSSILSFIEDGQSLRSVLKREGMPDSTTFYKWIDADENKSIQYTRACETRADVKFES 89

Query: 83  L----LEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI 135
           +    LEEP            + +++  K     + L KL  +KYG ++  E    I
Sbjct: 90  IEKDYLEEPQRDPVSGKIDAGWVQLQRLKIDSKKWELGKLQPKKYGDKIQNEISGAI 146


>gi|126443704|ref|YP_001063349.1| hypothetical protein BURPS668_A2355 [Burkholderia pseudomallei 668]
 gi|167907352|ref|ZP_02494557.1| hypothetical protein BpseN_34300 [Burkholderia pseudomallei NCTC
           13177]
 gi|126223195|gb|ABN86700.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 147

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           + +S  LF  I   + +GK++  V +  GMP   TF +W K+  +LQ+ Y +A   R D 
Sbjct: 16  VEFSQALFDRICALIGDGKSVREVCKGPGMPDRMTFLKWAKRTPELQKQYDDACIDRQDA 75

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138
           + +++L      A+ + +P     M D ++    + L +++ +++G  VS E     D  
Sbjct: 76  IFDDVLY----IADTVRDPKRAKVMVDARE----WTLARMNRKRFGNHVSNEHSGP-DGG 126

Query: 139 PAIERLREHYKHLKPIDSE 157
           P   + +     + P++  
Sbjct: 127 PIQTKTQVVRLRMSPVEEL 145


>gi|240016263|ref|ZP_04722803.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
 gi|240113248|ref|ZP_04727738.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
 gi|240116003|ref|ZP_04730065.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
 gi|240118307|ref|ZP_04732369.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
 gi|240126039|ref|ZP_04738925.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679]
 gi|268599328|ref|ZP_06133495.1| terminase small subunit [Neisseria gonorrhoeae MS11]
 gi|268601670|ref|ZP_06135837.1| gene 1 protein [Neisseria gonorrhoeae PID18]
 gi|268604019|ref|ZP_06138186.1| terminase small subunit [Neisseria gonorrhoeae PID1]
 gi|268684632|ref|ZP_06151494.1| terminase small subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268583459|gb|EEZ48135.1| terminase small subunit [Neisseria gonorrhoeae MS11]
 gi|268585801|gb|EEZ50477.1| gene 1 protein [Neisseria gonorrhoeae PID18]
 gi|268588150|gb|EEZ52826.1| terminase small subunit [Neisseria gonorrhoeae PID1]
 gi|268624916|gb|EEZ57316.1| terminase small subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 149

 Score =  127 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             +  +    Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  
Sbjct: 5   KRKLGRPT-DYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYAR 63

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           A + + D  AEE++E  A +A+  +  V  +K++   ++   +   K++ +KYG +  ++
Sbjct: 64  AREKQADYFAEEIIE-IADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKTELD 119

Query: 131 SKHTI-DLRPAIERLREHYKHLKPIDSERI 159
            K     +R A+    E Y+ +      R+
Sbjct: 120 VKSGDGSMRAAVRLDAEEYRKIAEDVLRRV 149


>gi|59800932|ref|YP_207644.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
 gi|239999272|ref|ZP_04719196.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
 gi|240013814|ref|ZP_04720727.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
 gi|240121387|ref|ZP_04734349.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
 gi|240123851|ref|ZP_04736807.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
 gi|254494034|ref|ZP_05107205.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440181|ref|ZP_05793997.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
 gi|268595095|ref|ZP_06129262.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268682475|ref|ZP_06149337.1| terminase small subunit [Neisseria gonorrhoeae PID332]
 gi|291043472|ref|ZP_06569188.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398784|ref|ZP_06642952.1| phage associated protein [Neisseria gonorrhoeae F62]
 gi|59717827|gb|AAW89232.1| hypothetical protein, putative phage associated protein [Neisseria
           gonorrhoeae FA 1090]
 gi|226513074|gb|EEH62419.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548484|gb|EEZ43902.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268622759|gb|EEZ55159.1| terminase small subunit [Neisseria gonorrhoeae PID332]
 gi|291011935|gb|EFE03924.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610786|gb|EFF39893.1| phage associated protein [Neisseria gonorrhoeae F62]
          Length = 149

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             +  +    Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  
Sbjct: 5   KRKLGRPT-DYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYAR 63

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           A + + D  AEE++E  A +A+  +  V  +K++   ++   +   K++ +KYG +  ++
Sbjct: 64  AREKQADYFAEEIIE-IADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKSELD 119

Query: 131 SKHTI-DLRPAIERLREHYKHLKPIDSERI 159
            K     +R A+    E Y+ +      R+
Sbjct: 120 VKSGDGSMRAAVRLDAEEYRKIAEDVLRRV 149


>gi|240080383|ref|ZP_04724926.1| putative phage associated protein [Neisseria gonorrhoeae FA19]
 gi|268596526|ref|ZP_06130693.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550314|gb|EEZ45333.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 149

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             +  +    Y+ ++   I +++ANG++L  +  + G+P   T YRW++ + + +  Y  
Sbjct: 5   KRKLGRPT-DYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYAR 63

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           A + + D  AEE++E  A +A+  +  V  +K++   ++   +   K++ +KYG +  ++
Sbjct: 64  AREKQADYFAEEIIE-IADSAQAESAAVSKAKLQIDARK---WAASKIAPKKYGDKTELD 119

Query: 131 SKHTI-DLRPAIERLREHYKHLKPIDSERI 159
            K     +R A+    E Y+ +      R+
Sbjct: 120 VKSGDGSMRAAVRLDAEEYRKIAEDVLRRV 149


>gi|300935518|ref|ZP_07150512.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300459317|gb|EFK22810.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 171

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ E    I + VA+G+++  + +  GMP  ST  +W +   +  + Y  A +   ++LA
Sbjct: 25  YTEEKALEICELVADGQSVNKISKMPGMPTRSTILKWFRDVPEFSDMYMRAKEIGFEVLA 84

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMG--TFLLEKLSNQKYGPRVSVESKHTIDLR 138
           +E+L+       + A  V   ++R  +  +    +LL KL  +KYG RV+ E     +  
Sbjct: 85  DEILDIA-----DDAKNVDKDQLRRHQLMIETRKWLLAKLQPRKYGERVTQEIVGNKEEA 139

Query: 139 PAIERLRE 146
           P    + +
Sbjct: 140 PVQVEVNQ 147


>gi|332343006|gb|AEE56340.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 161

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+ E    I + VA+G+++  + +  GMP  ST  +W +   +  + Y  A +   ++LA
Sbjct: 25  YTEEKALEICELVADGQSVNKISKMPGMPTRSTILKWFRDVPEFSDMYMRAKEIGFEVLA 84

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMG--TFLLEKLSNQKYGPRVSVESKHTIDLR 138
           +E+L+       + A  V   ++R  +  +    +LL KL  +KYG RV+ E     +  
Sbjct: 85  DEILDIA-----DDAKNVDKDQLRRHQLMIETRKWLLAKLQPRKYGERVTQEIVGNKEEA 139

Query: 139 PAIERLREH 147
           P    + + 
Sbjct: 140 PVQVEVTKE 148


>gi|261381053|ref|ZP_05985626.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284796086|gb|EFC51433.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 141

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             +  +    YS E+   I +++ANG++L  +  + GMP  ST  +W+ ++ +  E Y  
Sbjct: 5   KRKTGRPS-KYSDEMAENICEKIANGRSLRSICAEDGMPTTSTVCKWLIENKEFSEQYAR 63

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           A   + D  AEE++E       E A     +K++   ++   +   K++ +KYG +V  +
Sbjct: 64  ARDKQADYFAEEIIEIADSAEAESAAV-AKAKLQIDARK---WAASKIAPKKYGDKVEQQ 119

Query: 131 SKHTIDLRPAI 141
               + ++  +
Sbjct: 120 ITGNLAIQADV 130


>gi|329119004|ref|ZP_08247698.1| terminase small subunit [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464877|gb|EGF11168.1| terminase small subunit [Neisseria bacilliformis ATCC BAA-1200]
          Length = 153

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 10  KAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69
           KA R       YS  L   I +++A G++L  V     MP  ST ++W+ ++ +  E Y 
Sbjct: 20  KAKRPIGRPNTYSKGLADRICERIARGESLRAVCSDGDMPSASTVHKWLAENQEFSEQYA 79

Query: 70  EALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSV 129
            A + + D  A++++        E A  V  +K++   ++   +   KL+ +KYG ++ +
Sbjct: 80  HAREEQADHFAQDIIRIADEVEPESAA-VAKAKLQIDARK---WTAAKLAPKKYGDKIDL 135

Query: 130 ESKHTIDLRPAIE 142
               + D+R  +E
Sbjct: 136 ----SGDMRVQVE 144


>gi|239835387|ref|YP_002956059.1| hypothetical protein DMR_p1_00530 [Desulfovibrio magneticus RS-1]
 gi|239794478|dbj|BAH73469.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 162

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 13/173 (7%)

Query: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
           MS           A + C  +S E+   +   +  G+ L  +    GMP  +T Y W+ K
Sbjct: 1   MSGKKSGDVAKKVAGRPC-SFSQEVADAVCQGIMEGRGLRSICADPGMPGPATVYSWLTK 59

Query: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
               QE Y  A + + D+  +E++       +        ++ R   ++   +   KL  
Sbjct: 60  YASFQEQYALAREVQADVYFDEVVSIADNEPD-----PQIARNRIDARK---WAASKLRP 111

Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKP-LEIVE 172
           ++YG R+ VE +  + +      +      L P  +       T KP L  VE
Sbjct: 112 KRYGDRLEVEHQGGVGMNAVQITISPATP-LAP--AMPAVLDVTPKPALPCVE 161


>gi|309379924|emb|CBX21335.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 136

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 9   KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68
            KA R       YS E    I + +A G +L  +     MP   T +RW+ +    QE Y
Sbjct: 2   AKAKRPIGRPTTYSQETADKICELIARGMSLRAICTSADMPAGGTVHRWLAEHQDFQEQY 61

Query: 69  TEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVS 128
             A + + D  A+E+++     A E    V  +K++   ++   +   KL+ +KYG ++ 
Sbjct: 62  ARAREEQADGFADEIIDIADSVAPE-TGEVAKAKLQIDARK---WKAAKLAPKKYGEKLE 117

Query: 129 VESKHTIDLRPAIERLREHYK 149
           +++   + ++     L + +K
Sbjct: 118 LDAD--MRVKVETRSLEDIFK 136


>gi|119386462|ref|YP_917517.1| hypothetical protein Pden_3755 [Paracoccus denitrificans PD1222]
 gi|119377057|gb|ABL71821.1| hypothetical protein Pden_3755 [Paracoccus denitrificans PD1222]
          Length = 133

 Score =  111 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 27  AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86
             I + +A G +L  VLRK GMP YST  RW++ D   +  Y  A + + D  A+++ + 
Sbjct: 15  DAICEAIACGDSLAKVLRKKGMPGYSTVIRWLRDDEDFRVDYARAREAQADADADKIGDI 74

Query: 87  PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLR 145
                    +P               +   K   +KYG ++ ++    I+ R  IER+ 
Sbjct: 75  VDRVLAGKLDPQAA----RAAIDALKWTAGKRQPKKYGDKLDLD----INGRVQIERVE 125


>gi|329119588|ref|ZP_08248269.1| putative phage associated protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464185|gb|EGF10489.1| putative phage associated protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 135

 Score =  108 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83
           ++   I + +A G+++  + R   MP  ST YRWI +  +  E Y  A + + D+LA+E+
Sbjct: 7   DIMERICELLAAGQSMAQICRSKAMPAQSTVYRWIAESAEFSERYAHAREMQADMLADEI 66

Query: 84  LEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVES 131
           +E       E A         D +     +L  +L+ +KYG RV V +
Sbjct: 67  IEIADSCEPEAAAVAKAKARIDAR----KWLAARLAPKKYGDRVDVSA 110


>gi|116253679|ref|YP_769517.1| hypothetical protein RL3939 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258327|emb|CAK09429.1| putative phage-related protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 157

 Score =  106 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 21/150 (14%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
            ++  L   I +++A+G++L  + R   MP  ST   W+  D K   +  Y +A + + D
Sbjct: 7   KFTTALADIICERIADGESLRSICRDDAMPAKSTVLAWLADDDKTAFRTKYAQAREIQAD 66

Query: 78  LLAEELLEEPAPTA----------------EELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121
              +E++E                      +E    +  S++R   +    ++ EKL  +
Sbjct: 67  GFVDEMVEIADDGTNDWMEKKNADGETTGWQENGEAIRRSQLRIGTR---QWIAEKLKPK 123

Query: 122 KYGPRVSVESKHTIDLRPAIERLREHYKHL 151
           KYG +V +E   T ++   +E +    + L
Sbjct: 124 KYGAKVELEHGVTGEVSQLLEAINGKTRGL 153


>gi|218782398|ref|YP_002433716.1| hypothetical protein Dalk_4570 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763782|gb|ACL06248.1| hypothetical protein Dalk_4570 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 196

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWI--KKDLKLQEAYTEALQCRLDL 78
           Y+ E+   I +++A+G+++  +     MP  +  YRW+   +  K +E YT A + + D 
Sbjct: 9   YTDEIAETICERIASGESVQSITSDEDMPSSAMVYRWLADARYSKFREMYTRARERQADF 68

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138
            A+E++             V        + +   +   KL  +KYG R+ V  + T+   
Sbjct: 69  FADEIITIADTEDNPKKAAV--------RVQARQWAASKLKPRKYGDRIDVHQQGTVTHT 120

Query: 139 PAIERLR 145
            A + + 
Sbjct: 121 IAPDMIE 127


>gi|160897384|ref|YP_001562966.1| putative terminase small subunit protein [Delftia acidovorans
           SPH-1]
 gi|160362968|gb|ABX34581.1| putative terminase small subunit protein [Delftia acidovorans
           SPH-1]
          Length = 157

 Score =   99 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 26/134 (19%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIK--KDLKLQEAYTEALQCRLDL 78
           ++ ++   + D++A G++L  +     MP  +T  RW+   ++   +E Y  A   + D 
Sbjct: 7   FNEDIATKLCDRIAAGESLRKICTDPKMPSMATVMRWLGKPENAAFREQYACARDAQADK 66

Query: 79  LAEELLEEPAPTAEEL---------------------ANPVFYSKMRDRKQRMGTFLLEK 117
           L EE+LE        +                     A  V  +K+R   ++   ++  K
Sbjct: 67  LVEEMLEIADEECTMVRSDKHGSKDDDGQGNTEVVFDATAVARNKLRVDARK---WVASK 123

Query: 118 LSNQKYGPRVSVES 131
           ++ +KYG +V+ E 
Sbjct: 124 MAPKKYGDKVTQEV 137


>gi|241203595|ref|YP_002974691.1| terminase small subunit protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857485|gb|ACS55152.1| putative terminase small subunit protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 157

 Score = 98.0 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 21/128 (16%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRL 76
           I ++  L   I +++A+ ++L  + R  GMP  S+   W+  D K   +  Y  A + + 
Sbjct: 5   IKFTQALADRICERIADRESLRSICRDEGMPAMSSVLSWLADDDKAGFRAKYALAREIQA 64

Query: 77  DLLAEELLEEPAPTAE----------------ELANPVFYSKMRDRKQRMGTFLLEKLSN 120
           D   +E++E     A+                E    +  S++R   +    ++  KL  
Sbjct: 65  DGFVDEMVEIADDRADDWIEKKNASGETTGWQENGEAIRRSQLRIATR---QWVAAKLKP 121

Query: 121 QKYGPRVS 128
           +KYG +V 
Sbjct: 122 KKYGSKVE 129


>gi|319783527|ref|YP_004143003.1| hypothetical protein Mesci_3836 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169415|gb|ADV12953.1| putative phage-related protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 158

 Score = 97.2 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 20/145 (13%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK--DLKLQEAYTEALQCRLD 77
            ++ E+   I   +A G +L  +     MP  ST  RW+         + Y  A + + D
Sbjct: 6   EFTQEIADTICQSLAEGNSLRSICLADEMPDKSTVLRWLLDPVRAAFCDQYARARELQAD 65

Query: 78  LLAEELLEEPAPTAEELANPV---------------FYSKMRDRKQRMGTFLLEKLSNQK 122
           +  +E+ +    +  +    V                 S++R   ++   ++ E++  +K
Sbjct: 66  IHVDEMPDIADDSRNDYMTKVNGDGTTTEQLNSENIQRSRLRIDTRK---WIAERMRPKK 122

Query: 123 YGPRVSVESKHTIDLRPAIERLREH 147
           YG +V++       L   + +L + 
Sbjct: 123 YGAKVALTDGEGGPLVVQVLKLADQ 147


>gi|254497230|ref|ZP_05110039.1| putative phage associated protein [Legionella drancourtii LLAP12]
 gi|254353554|gb|EET12280.1| putative phage associated protein [Legionella drancourtii LLAP12]
          Length = 157

 Score = 96.1 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 4   LVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGM--PKYSTFYRWIKKD 61
           + K + K  R  K    Y+ EL   I + +A+      VL K  M  P   T + W+KK 
Sbjct: 1   MAKTSSKIGRPTK----YNSELAEEICNVIASTSKGTKVLCKENMHWPCQDTLFAWLKKY 56

Query: 62  LKLQEAYTEALQCRLDLLAEELLEEPAPTA-----EELANPV---FYSKMRDRKQRMGTF 113
            +  E Y +A  C+++LL +E+LE     +     +E   PV           K     +
Sbjct: 57  PEFSEQYAQAKICQIELLIDEILEIADDESNDCFIDEDGKPVSNNSVVNRARLKIDTRKW 116

Query: 114 LLEKLSNQKYGPRVSVESKHTID--LRPAIERLREHY 148
           L  KL  + YG ++ +ES  ++   LR     L   Y
Sbjct: 117 LASKLVPKVYGNKIGIESDSSMSEELRKLSADLEVKY 153


>gi|86356735|ref|YP_468627.1| putative terminase small subunit protein [Rhizobium etli CFN 42]
 gi|86280837|gb|ABC89900.1| putative terminase small subunit protein [Rhizobium etli CFN 42]
          Length = 156

 Score = 96.1 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
            +S  L   I D++A+ ++L  + R   MP  ST   W+  + K   +  Y  A +   D
Sbjct: 6   KFSQALAEKICDRIADRESLRSICRDEDMPSKSTVLSWLADEEKAAFRARYALAREIMAD 65

Query: 78  LLAEELLEEPAPTAEELANPVFYS-------------KMRDRKQRMGTFLLEKLSNQKYG 124
              +EL+E     +++       +             +    +     ++ EKL  +KYG
Sbjct: 66  SFVDELVEIADDRSDDWVEKKNAAGETTGWQENGEAIRRSQLRIATRQWVAEKLRPKKYG 125

Query: 125 PRVSVESKHTIDLRPAIERLREHYKHL 151
            +V  E   T ++   +E +    + L
Sbjct: 126 TKVEPEQSVTGEVSQLLEVVNGRTRGL 152


>gi|326564855|gb|EGE15061.1| putative phage associated protein [Moraxella catarrhalis 103P14B1]
          Length = 139

 Score = 94.5 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 9   KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68
            K  +  +  I Y+ +L A  L +VA G+++  V     MP  +T Y W+  +    + Y
Sbjct: 3   AKKPKMGRPTI-YNEDLVAEFLYRVAKGRSVASVCSDDDMPHRATIYEWLAHNSDFSDRY 61

Query: 69  TEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVS 128
             A + R D   +E+L        E    V  +K++   ++   ++L +++ +KY  +  
Sbjct: 62  ARASEQRADQYFDEMLHIADNALPEE---VQKAKLQIDTRK---WVLARMNPKKYSGKSQ 115

Query: 129 VE 130
            +
Sbjct: 116 DD 117


>gi|209548330|ref|YP_002280247.1| terminase small subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534086|gb|ACI54021.1| putative terminase small subunit protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 156

 Score = 93.0 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
            ++  L   I +++A+ ++L  + R   MP  ST   W+  D K   +  Y  A +   D
Sbjct: 6   KFTQALAEKICERIADRESLRAICRDEDMPAKSTVLSWLADDGKAAFRARYALAREILAD 65

Query: 78  LLAEELLEEPAPTA----------------EELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121
              +EL+E     +                +E    +  S++R   +    ++ EKL  +
Sbjct: 66  GFVDELVEIADDRSNDWIEKKNAAGETTGWQENGEAIRRSQLRIATR---QWVAEKLRPK 122

Query: 122 KYGPRVSVESKHTIDLRPAIERLREHYKHL 151
           KYG +   E   T ++   +E +    + L
Sbjct: 123 KYGSKAEPEQGVTGEVSQLLEDINGKTRGL 152


>gi|116251009|ref|YP_766847.1| hypothetical protein RL1242 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255657|emb|CAK06738.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 157

 Score = 92.6 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRL 76
           I ++  +   I +++AN ++L  + R   +P  S+   W+  D K   +  Y  A + + 
Sbjct: 5   IKFTQAIADRICERIANRESLRSICRDEEVPAMSSVLSWLADDDKAGFRAKYALAREIQA 64

Query: 77  DLLAEELLEEPAPTAE----------------ELANPVFYSKMRDRKQRMGTFLLEKLSN 120
           D   +E++E     A+                E    +  S++R   +    ++ EKL  
Sbjct: 65  DGFVDEMVEIADDRADDWIEKKNASGETTGWQENGEAIRRSQLRIATR---QWVAEKLKP 121

Query: 121 QKYGPRVSVESKHTI 135
           +KYG +V  E  H +
Sbjct: 122 KKYGSKV--EPDHGV 134


>gi|327189475|gb|EGE56635.1| putative terminase small subunit protein [Rhizobium etli CNPAF512]
          Length = 156

 Score = 92.6 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 21/150 (14%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
            +S  L   I D++A+ ++L  + R   MP  ST   W+  + K   +  Y  A +   D
Sbjct: 6   KFSQALAEKICDRIADRESLRSICRDETMPAKSTVLSWLADEDKAAFRARYALAREILAD 65

Query: 78  LLAEELLEEPAPTAE----------------ELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121
              +EL+E    +++                E    +  S++R   +    ++ EKL  +
Sbjct: 66  GFVDELVEIADNSSDDWIEKKNASGETTGWQENGEAIRRSQLRIATR---QWVAEKLRPK 122

Query: 122 KYGPRVSVESKHTIDLRPAIERLREHYKHL 151
           KYG ++  E     ++   +E +    + L
Sbjct: 123 KYGAKIEPEQGVAGEVSQLLEDINGKTRGL 152


>gi|218461767|ref|ZP_03501858.1| putative terminase small subunit protein [Rhizobium etli Kim 5]
          Length = 146

 Score = 89.9 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
            +S  L   I D++A+ ++L  + R   MP  ST   W+  + K   +  Y  A +   D
Sbjct: 6   KFSQALAEKICDRIADRESLRSICRDDAMPAKSTVLSWLADEDKAAFRARYALAREILAD 65

Query: 78  LLAEELLEEPAPTA----------------EELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121
              +EL+E    ++                +E    +  S++R   +    ++ EKL  +
Sbjct: 66  GFVDELVEIADDSSNDWIEKKNAAGETTGWQENGEAIRRSQLRIATR---QWVAEKLRPK 122

Query: 122 KYGPRVSVESKHTIDLRPAIERL 144
           KYG +V  E   + ++   +E +
Sbjct: 123 KYGAKVEPEQGVSGEVSQLLEDI 145


>gi|41179387|ref|NP_958695.1| Bbp26 [Bordetella phage BPP-1]
 gi|45569519|ref|NP_996588.1| hypothetical protein BMP-1p25 [Bordetella phage BMP-1]
 gi|45580770|ref|NP_996636.1| hypothetical protein BIP-1p25 [Bordetella phage BIP-1]
 gi|40950126|gb|AAR97692.1| Bbp26 [Bordetella phage BPP-1]
          Length = 194

 Score = 86.8 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 8   AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
             +     K    Y+  +   I D++A+G+ L  + R   MP + T Y WI+   +  E 
Sbjct: 15  DARKTARMKNASTYTEAIATEICDRIADGEPLRQICRDEHMPAWRTVYHWIEARPEFAER 74

Query: 68  YTEALQCRLDLLAEELLEEPAP----TAEELANPVFYSKM------RDRKQRMGTFLLEK 117
              A +   D +AEE LE           E ++  +  K       R  +      LL K
Sbjct: 75  MERARRAGFDAIAEEALEIANTPQTGEETEESDDGYKVKRGDMLGHRKLQVETRLKLLAK 134

Query: 118 LSNQKYGPRVSVESKHTIDLRPAIERLRE 146
               KYG + S+E     +  P      E
Sbjct: 135 WHPTKYGDKTSMELTGA-NGGPVQINDTE 162


>gi|254497365|ref|ZP_05110168.1| hypothetical protein LDG_1611 [Legionella drancourtii LLAP12]
 gi|254353418|gb|EET12150.1| hypothetical protein LDG_1611 [Legionella drancourtii LLAP12]
          Length = 171

 Score = 84.9 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 10  KAVRAKKG-CIYYSPELFAGILDQVANG-KALGHVLR-KVGMPKYSTFYRWIKKDLKLQE 66
           KA+++K G    Y+  L   I D +A+  K +  + +     P   T + W+K++    +
Sbjct: 24  KALKSKNGRPTTYTLALAKEICDAIASSSKGIKALCQGHPHWPNKDTIFTWLKENQDFSD 83

Query: 67  AYTEALQCRLDLLAEELLEEPAPTAEELA-----------NPVFYSKMRDRKQRMGTFLL 115
            Y  A Q +++ + +ELLE    ++++               +  +K+R   ++   +L 
Sbjct: 84  QYARAKQAQIECVVDELLEIADDSSQDQVFDSEGQIHFNGQAIQRAKLRIDTRK---WLA 140

Query: 116 EKLSNQKYG 124
            KL  + YG
Sbjct: 141 CKLVPKVYG 149


>gi|187476924|ref|YP_784948.1| phage terminase small subunit [Bordetella avium 197N]
 gi|115421510|emb|CAJ48019.1| Putative phage terminase small subunit [Bordetella avium 197N]
          Length = 170

 Score = 84.9 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+  +   I D++A+G+ L  + R   MP + T Y WI+   K  E    A +   D +A
Sbjct: 7   YTEAIATEICDRIADGEPLRQICRDQHMPAWRTVYHWIEARSKFAERMERARRVGFDAIA 66

Query: 81  EELLEEP------APTAEELAN-PVFYSKM---RDRKQRMGTFLLEKLSNQKYGPRVSVE 130
           EE LE          T +E +   V    M   R  +      LL K    KYG + S+E
Sbjct: 67  EEALEIANTPQIGEETEQEGSKFRVKRGDMLGHRKLQVETRLKLLAKWHPTKYGDKTSME 126

Query: 131 SKHTIDLRPAIERLR 145
                     I+  +
Sbjct: 127 LTGAGGGPVRIDETQ 141


>gi|194098999|ref|YP_002002066.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|193934289|gb|ACF30113.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|317164558|gb|ADV08099.1| putative phage associated protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 106

 Score = 83.7 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 51  YSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRM 110
             T YRW++ + + +  Y  A + + D  AEE++E  A +A+  +  V  +K++   ++ 
Sbjct: 1   MKTIYRWLEANEEFRHQYARAREKQADYFAEEIIE-IADSAQAESAAVSKAKLQIDARK- 58

Query: 111 GTFLLEKLSNQKYGPRVSVESKHTI-DLRPAIERLREHYKHLKPIDSERI 159
             +   K++ +KYG +  ++ K     +R A+    E Y+ +      R+
Sbjct: 59  --WAASKIAPKKYGDKTELDVKSGDGSMRAAVRLDAEEYRKIAEDVLRRV 106


>gi|197105030|ref|YP_002130407.1| hypothetical protein PHZ_c1567 [Phenylobacterium zucineum HLK1]
 gi|196478450|gb|ACG77978.1| hypothetical protein PHZ_c1567 [Phenylobacterium zucineum HLK1]
          Length = 289

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 11  AVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
             RA      +S  L   IL ++A G++L  V     MP +++  RW+ +    ++ Y +
Sbjct: 81  RRRANHP---WSRVLEDEILRRIAAGRSLVEVCEAPEMPHHTSVTRWLDEKPGFRDRYLD 137

Query: 71  ALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGP 125
           A   + D L + L    A  A+E  + V  ++++    +   + + +LS ++YGP
Sbjct: 138 ARLAQADGLFD-LAWRIAREADE--DEVRTARLKVDVIK---WRIGRLSPKRYGP 186



 Score = 39.1 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           + +++  G++L  V R   +P+     RW   +    E   EA +   D 
Sbjct: 27 QVCERLEAGESLCGVCRDPLLPQRYQLDRWRAAEPLFDEMVREARRRAQDA 77


>gi|254497906|ref|ZP_05110671.1| putative phage associated protein [Legionella drancourtii LLAP12]
 gi|254352904|gb|EET11674.1| putative phage associated protein [Legionella drancourtii LLAP12]
          Length = 155

 Score = 81.8 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 13  RAKKGCIYYSPELFAGILDQVAN-GKALGHVLRKVG-MPKYSTFYRWIKKDLKLQEAYTE 70
           +  +    Y+ +L   I D +A+  K    +  +    P   T + W++   +  E Y +
Sbjct: 5   KQGRPT-KYNLKLGQEICDAIASTSKGTKKLCAEHSHWPCQDTLFTWLRTYPEFSEQYVK 63

Query: 71  ALQCRLDLLAEELLEEPAPTAEE--------LANPVFYSKMRDRKQRMGTFLLEKLSNQK 122
           A  C+++LL +++LE     +++        L +                ++  KL  + 
Sbjct: 64  AKICQVELLVDDILEISDDASQDQYVNERGVLVSNTQSINRARLMIDARKWVACKLVPKV 123

Query: 123 YGPRVSVESKHTID 136
           YG ++ +ES  ++ 
Sbjct: 124 YGNKIDIESNSSMS 137


>gi|197104489|ref|YP_002129866.1| hypothetical protein PHZ_c1023 [Phenylobacterium zucineum HLK1]
 gi|196477909|gb|ACG77437.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 221

 Score = 79.5 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 16  KGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75
           + C  Y  E    I  ++  G+AL  + R   MP  ST Y W+ ++ +  EAY  A + +
Sbjct: 26  RPC-GYCRETAEAIFVRLCGGEALSAICRDPQMPAASTVYAWLAREPQFAEAYRLAREVQ 84

Query: 76  LDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
            D LA E  E       + A   F +K+R    R   +   KL  + +G
Sbjct: 85  ADALAAEGWELAKAATPDTA---FLAKVRLEHLR---WYAAKLGPRTWG 127


>gi|253699635|ref|YP_003020824.1| hypothetical protein GM21_1002 [Geobacter sp. M21]
 gi|251774485|gb|ACT17066.1| hypothetical protein GM21_1002 [Geobacter sp. M21]
          Length = 191

 Score = 78.7 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 66/155 (42%), Gaps = 17/155 (10%)

Query: 6   KKAKKAVRAKKGCIYYSPELFAGILDQVAN-GKALGHVLRKVG-MPKYSTFYRWIKKDLK 63
           ++  +  +  +  + Y+ E+   I  ++A   K+L  V  +    P + T  RW++++  
Sbjct: 12  EEETEGKKQGRPTL-YTAEIAEEICYRIATTAKSLKRVCDEDERFPSHRTVLRWVQENSD 70

Query: 64  LQEAYTEALQCRLDLLAEELLEEPAPTAEELA----------NPVFYSKMRDRKQRMG-- 111
               Y  A + + + LA E LE    ++ ++A            V    +   ++R    
Sbjct: 71  FCHQYRIAREEQGNFLAFEGLEIIDDSSLDIAFKDDGKGGATAFVDREVIARSRERAAYR 130

Query: 112 TFLLEKLSNQKYGPRVSVESKH--TIDLRPAIERL 144
            +L  KL+ ++YG ++ V      +  L   I+++
Sbjct: 131 KWLASKLAPKRYGEKLDVNHDGPVSDALAALIQKV 165


>gi|330992640|ref|ZP_08316585.1| putative phage associated protein [Gluconacetobacter sp. SXCC-1]
 gi|329760294|gb|EGG76793.1| putative phage associated protein [Gluconacetobacter sp. SXCC-1]
          Length = 131

 Score = 77.6 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 14  AKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ 73
            ++G   YS  L   I  +++NG++L  +     MP  +T  RW+  + + +  Y  A +
Sbjct: 9   PRRGA--YSRRLADEICARLSNGQSLRAICTDPAMPHRATVLRWLHANPEFRSLYALARE 66

Query: 74  CRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
              D LAEE++           + V   K+R   +    ++  +L  
Sbjct: 67  AAADALAEEIVSIADR--ATGRDDVPAIKLRMEARM---WVATRLRP 108


>gi|319786768|ref|YP_004146243.1| hypothetical protein Psesu_1162 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465280|gb|ADV27012.1| putative phage-related protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 152

 Score = 75.3 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 22  SPELFAGILDQVANGKALGHVLRKVG--MPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79
           +PE+   +L +++ G+ L  +LR      P  S +Y W+ +D  L   + +A +   D +
Sbjct: 6   TPEIADEVLARLSEGEPLRAILRSDPERFPGKSQWYAWMAEDEDLAARFRQAREEGADAI 65

Query: 80  AEELLEEPAPTAEE----------------LANPVFYSKMRDRKQRMGTFLLEKLSNQKY 123
           AEE LE       +                    V  SK+R   +     LL K   Q+Y
Sbjct: 66  AEECLEIADDARNDWMERQGEDGQGEGFQLNGEHVQRSKLRIHTRMQ---LLAKWFPQRY 122

Query: 124 GPRVSVESKHTIDLRPAIERLREHY 148
           G +V++E               E  
Sbjct: 123 GDKVAMEHTGPGGGPVQTVTRIERR 147


>gi|82702593|ref|YP_412159.1| hypothetical protein Nmul_A1464 [Nitrosospira multiformis ATCC
           25196]
 gi|82410658|gb|ABB74767.1| hypothetical protein Nmul_A1464 [Nitrosospira multiformis ATCC
           25196]
          Length = 190

 Score = 71.8 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 27/166 (16%)

Query: 6   KKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ 65
           KK+ +A++ +        E    I   ++ GK+   +  +VG+      + W+  D +L 
Sbjct: 36  KKSSRAIKRR--------EALDAIFAGISLGKSARAMCVEVGI-SQRVLWNWLASDEELM 86

Query: 66  EAYTEALQCRLDLLAEELLEEPAPTAEEL-----------ANPVFYSKMRDRKQRMGTFL 114
             Y  A +  +D  AEE++E     + +               +  +++R   ++   + 
Sbjct: 87  RQYQRAKELCVDAYAEEIIEISDEGSRDTYVDEKGREVINREVIARAQLRIDARK---WY 143

Query: 115 LEKLSNQKYGPRVSVESKHTIDLRP----AIERLREHYKHLKPIDS 156
             +L+ +KYG ++ V ++     +     AI  +    +  +P  S
Sbjct: 144 AARLAPRKYGDKLPVTNEGADARKAAHNIAIAFVAPEDRGNEPNVS 189


>gi|218671080|ref|ZP_03520751.1| putative terminase small subunit protein [Rhizobium etli GR56]
          Length = 106

 Score = 71.0 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK--LQEAYTEALQCRLD 77
           +S  L   I D++A+ ++L  + R   MP  ST   W+  + K   +  Y  A +   D
Sbjct: 6  KFSQALAEKICDRIADRESLRSICRDETMPAKSTVLSWLADEDKAAFRARYALAREILAD 65

Query: 78 LLAEELLEEPAPTAEE 93
             +EL+E    ++ +
Sbjct: 66 GFVDELVEIADDSSND 81


>gi|296535572|ref|ZP_06897753.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296264088|gb|EFH10532.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 137

 Score = 70.3 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83
           E  A + D +  G ++     +   P  +  Y  +  D   +     A + +   + +E 
Sbjct: 5   EAVARLCDLLICGMSMSEACARDDSPSRTAVYTKMAADAAFRATIARAREAQQHAIIDET 64

Query: 84  LEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIER 143
           +E       E    V   K+R   +    +   KL+ + YG +V +   +   L   I+ 
Sbjct: 65  IEMADAATPEDWQVV---KLRIWAR---QWRAAKLAPRVYGNKVEMAGSNENPLTLLIQE 118

Query: 144 LREH 147
           ++  
Sbjct: 119 VQGR 122


>gi|87201017|ref|YP_498274.1| putative phage associated protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136698|gb|ABD27440.1| conserved hypothetical protein, putative phage associated protein
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 144

 Score = 68.7 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 16  KGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75
           +  +  + E+   I++++++G+ L  + R   +P + T  RW ++D   +     A    
Sbjct: 3   RPSLK-TDEVVEEIIERLSHGEPLARICRDAHLPSFRTVLRWEEEDEAFRHLSARARSYG 61

Query: 76  LDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPR 126
            D +A++ ++       E A+     ++R   +     L+ K + +KYG +
Sbjct: 62  TDYIADDCMDIADNPEIEPAD----KRIRIDTRLR---LIGKWNARKYGEK 105


>gi|264678786|ref|YP_003278693.1| terminase small subunit protein [Comamonas testosteroni CNB-2]
 gi|262209299|gb|ACY33397.1| putative terminase small subunit protein [Comamonas testosteroni
           CNB-2]
          Length = 142

 Score = 67.9 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 39  LGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEE----- 93
           +    R+     Y+T   WI  D    E Y  A + R D LA+E++              
Sbjct: 1   MADFCRQHEF-AYTTMLDWINADSSRAEMYARAREDRSDKLADEIVAISDECEYAPITDM 59

Query: 94  ----------LANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIER 143
                         V  +K+R   ++   ++  KL  + YG +V VE   T+D +   + 
Sbjct: 60  STGETIAVAFDKTAVARNKLRVDARK---WIAAKLKPRVYGDKVQVE--GTVDHKVMSDD 114

Query: 144 -LREHYKHLKPIDSERIPHKSTE 165
            L +    L    +  +P   TE
Sbjct: 115 ALLQRLAKLGVSVASIVPVGPTE 137


>gi|300928613|ref|ZP_07144136.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300463413|gb|EFK26906.1| conserved hypothetical protein [Escherichia coli MS 187-1]
          Length = 113

 Score = 67.2 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79
             +P L   I   +  G++L  + +  GMP  +T  RW+ +D   ++A  +        L
Sbjct: 7   KLTPRLAEDICLLILEGRSLLAISKMPGMPSIATLNRWMCEDEDFRQAVNDCRDVYAGDL 66

Query: 80  AEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQK 122
             +  E  A    +  +  F  +   ++         + S +K
Sbjct: 67  FRQATELIASVPHDTEDRAFLLEQAKQQAASMRAEATRKSPRK 109


>gi|197106240|ref|YP_002131617.1| hypothetical protein PHZ_c2779 [Phenylobacterium zucineum HLK1]
 gi|196479660|gb|ACG79188.1| hypothetical protein PHZ_c2779 [Phenylobacterium zucineum HLK1]
          Length = 265

 Score = 66.4 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           Y+      I  ++A G+A+  +     MP     YRW++ + +      EA   +   L 
Sbjct: 156 YTRAAGEAICARLARGEAMSAINADPAMPSSKVVYRWLRTEPEFARMVAEARAQQRRALK 215

Query: 81  EEL-LEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG 124
            ++ L    P        +  +K R  +       L +L+ + +G
Sbjct: 216 LKIHLASDLPIQGTTREMLARAKARVARLEGR---LGRLTPKVWG 257



 Score = 42.5 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 28  GILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
            IL ++A G  +  +     MP Y+T + W++   +  EAY      R +L A
Sbjct: 70  EILRRMARGMTIKEITADPDMPSYATLFHWVRTFAEFGEAY---RALRAELAA 119


>gi|323941301|gb|EGB37486.1| hypothetical protein ERDG_02215 [Escherichia coli E482]
          Length = 112

 Score = 65.6 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79
             +P L   I   +  GK+L  V +  GMP  +T  RW+ +D   ++A  +        L
Sbjct: 7   KLTPRLAEEICLLILEGKSLLAVSKMPGMPSIATLNRWMCEDEDFRQAVNDCRDVYAGDL 66

Query: 80  AEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQK 122
             +  E  A    +  +  F  +   ++         + + +K
Sbjct: 67  FRQATELIAAVPSDTEDRAFLLEQAKQQAASMRAEANRKAPRK 109


>gi|197103879|ref|YP_002129256.1| hypothetical protein PHZ_c0413 [Phenylobacterium zucineum HLK1]
 gi|196477299|gb|ACG76827.1| hypothetical protein PHZ_c0413 [Phenylobacterium zucineum HLK1]
          Length = 266

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
           +S +L   +L ++  G +   + R  GMP   T  +W++          +A + R D+ A
Sbjct: 169 FSEDLQEAVLARIVEGHSFNSLSRLPGMPCRKTLGKWVRTRPDFAREVAQACEDREDIFA 228

Query: 81  EELLEEPAPTAEELANPVFYSKMR 104
           ++ LE       +    V   + +
Sbjct: 229 DQALEIALAGGPDAGRRVGRLRRQ 252



 Score = 37.1 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 21  YSPELFAGILDQVANGKALGHVLRK-VGMPKYSTFYRWIKKDLKL 64
           +       I+  +  G+ L  +L     +P  +T  RW +++ + 
Sbjct: 104 FDQAAADRIIVGLNRGEGLRALLNGDPSLPSAATVARWRRENREF 148


>gi|197104059|ref|YP_002129436.1| hypothetical protein PHZ_c0593 [Phenylobacterium zucineum HLK1]
 gi|196477479|gb|ACG77007.1| hypothetical protein PHZ_c0593 [Phenylobacterium zucineum HLK1]
          Length = 247

 Score = 61.8 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 17  GCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRL 76
           G   Y P +   I  ++  G++L  + R   MP  ST   W +   +  EA   A Q + 
Sbjct: 35  GMTTYCPVVANEIYTRLCAGESLSAICRDRDMPANSTVNLWRRDVPEFAEAMRMARQAQA 94

Query: 77  DLLAEELLEEPAPTAEELA--NPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHT 134
           +   +   E       E A    V   ++R        ++    S + +      E +  
Sbjct: 95  EAFCDTGWELAMGATPETAYLTHVRLGQLR--------WMAAVWSPRTHARLKPAEPEEA 146

Query: 135 IDLRPAIERLREHYKHLKPIDSERIP 160
            + +  I  L+      +   + R+ 
Sbjct: 147 PETQRLI--LKHFRLEEREDGAMRVV 170


>gi|323967888|gb|EGB63300.1| hypothetical protein ERJG_00918 [Escherichia coli M863]
          Length = 133

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 29/93 (31%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79
            Y+  L   I   VA G +L  + +   MP   T  RW  +    +E             
Sbjct: 24  KYTIALAEEICLLVAEGHSLREIAKMPDMPSLRTLMRWQYEHPDFREHIGIFKWIHAQDA 83

Query: 80  AEELLEEPAPTAEELANPVFYSKMRDRKQRMGT 112
           AE+ +E       E  +     K  +   R   
Sbjct: 84  AEQAVEAIRDVDLEAEDAPLKLKQAEALARTLL 116


>gi|294010852|ref|YP_003544312.1| hypothetical protein SJA_C1-08660 [Sphingobium japonicum UT26S]
 gi|292674182|dbj|BAI95700.1| hypothetical protein SJA_C1-08660 [Sphingobium japonicum UT26S]
          Length = 168

 Score = 56.4 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 16  KGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75
           +  +  SPE+ + I  ++ +G+ +  + +   MP  ST   W++ D   +    +A   +
Sbjct: 32  RPSVR-SPEVESEIFRRLTDGEDMVTICQDAHMPGRSTVCAWMENDPAFRAKIKDA--FK 88

Query: 76  LDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGP--RVSVESKH 133
           L ++   ++                 +    +     FLL K     +G   +V  E K 
Sbjct: 89  LQVIF--MIGMGWDILRGGEYSTGNVERDKAQVGYLRFLLGKFDRDWFGEQIKVEQEIKS 146

Query: 134 TIDLRP 139
            I  +P
Sbjct: 147 VIINQP 152


>gi|301644429|ref|ZP_07244427.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301077237|gb|EFK92043.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 138

 Score = 49.8 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 9  KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66
          KK  R  K    Y+ ++   I+  V+ G +L  +    GMP +    RW  + +  +E
Sbjct: 21 KKRGRPTK----YTEKIATQIVLLVSEGYSLRKISMMPGMPSHRQMMRWQLEHMDFRE 74


>gi|240119352|dbj|BAH79216.1| predicted protein [Escherichia coli O157:H7]
          Length = 140

 Score = 49.5 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 9   KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68
             + R+      Y+  +   I   VA   +L  + R+ GMP + T   W+ +  +L++  
Sbjct: 15  SPSKRSAGRKTKYNDRIAEQICLYVARNMSLREISRQPGMPHWDTLKIWMLQHPELRQTI 74

Query: 69  TEAL-QCRLDLLAE--ELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
                    + +AE  E   E    +E+    +  +K R         L+E    
Sbjct: 75  EAIRWLNGTEFIAEAMECYAEVETNSEDFPAQLALAKARAATLLGAARLMELRKP 129


>gi|16130371|ref|NP_416941.1| CPZ-55 prophage; predicted protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|170082055|ref|YP_001731375.1| CPZ-55 prophage; hypothetical protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|238901609|ref|YP_002927405.1| CPZ-55 prophage; hypothetical protein [Escherichia coli BW2952]
 gi|7388521|sp|P76546|YFFO_ECOLI RecName: Full=Uncharacterized protein yffO
 gi|1788787|gb|AAC75499.1| CPZ-55 prophage; predicted protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|169889890|gb|ACB03597.1| CPZ-55 prophage; predicted protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|238860668|gb|ACR62666.1| CPZ-55 prophage; predicted protein [Escherichia coli BW2952]
          Length = 138

 Score = 47.9 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 9  KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66
          KK  R  K    Y+ ++   I+  V+ G +L  +    GMP +    RW  + +  +E
Sbjct: 21 KKRGRPAK----YNEKIATQIVLLVSEGYSLRKISMMPGMPSHRQMMRWQLEHMDFRE 74


>gi|297528635|ref|YP_003669910.1| hypothetical protein GC56T3_0266 [Geobacillus sp. C56-T3]
 gi|297251887|gb|ADI25333.1| hypothetical protein GC56T3_0266 [Geobacillus sp. C56-T3]
          Length = 177

 Score = 47.5 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           + K KK        I  +PEL   ++  +  G  +      VG+   +TFY W+K+  + 
Sbjct: 1   MTKNKKGRP-----IKLTPELQEELVKVIRAGNYIETACAYVGI-NKTTFYDWLKRGARE 54

Query: 65  QEAYTE---ALQCRLDLLAEELLE--EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLS 119
           +E   +   A   + +    EL    E A    E+ +     K  +   +   + LE+  
Sbjct: 55  KERLAKNPNARPKKSEQPFVELSNAVEKALAQAEIRDVAIIGKAAEENWQAAAWRLERKF 114

Query: 120 NQKYG--PRVSVESKHTI 135
            +++G   R++ +  H+ 
Sbjct: 115 PERWGRRDRLTADLNHSG 132


>gi|196249501|ref|ZP_03148198.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196210795|gb|EDY05557.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 177

 Score = 46.4 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE---ALQCR 75
           I  +PEL   ++  +  G  +      VG+   +TFY W+K+  + +E   +   A   +
Sbjct: 10  IKLTPELQEELVKVIRAGNYIETACAYVGI-NKTTFYDWLKRGAREKERLAKNPNARPKK 68

Query: 76  LDLLAEELLE--EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG--PRVSVES 131
            +    EL    E A    E+ +     K  +   +   + LE+   +++G   R++ + 
Sbjct: 69  SEAPFVELSNAVEKALAQAEIRDVAIIGKAAEENWQAAAWRLERKFPERWGRKERLTADL 128

Query: 132 KHTI 135
            H+ 
Sbjct: 129 NHSG 132


>gi|330718174|ref|ZP_08312774.1| integral membrane protein [Leuconostoc fallax KCTC 3537]
          Length = 641

 Score = 46.0 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 58  IKKDLKLQEAYTEALQCRLD--LLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLL 115
           + +  + ++ Y        D   L +EL  E     ++         M+   +++     
Sbjct: 470 LNQGKQWRDNYQTKHNSEFDDNALRDELRSEQQAQRKKDRKEYLAKDMQKHARKIRKQRA 529

Query: 116 EKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEK 166
           E+L+  K     + E KH  D  P  +R ++      P+        S EK
Sbjct: 530 ERLNKMKQQKHQTNEPKHEPDNTPRYQRSKKLKADQVPVQEYVAQEGSPEK 580


>gi|138896467|ref|YP_001126920.1| hypothetical protein GTNG_2830 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196251050|ref|ZP_03149731.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|134267980|gb|ABO68175.1| Putative phage protein [Geobacillus thermodenitrificans NG80-2]
 gi|196209422|gb|EDY04200.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 177

 Score = 45.2 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 19  IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE---ALQCR 75
           I  +PEL   ++  +  G  +      VG+   +TFY W+K+  + +E   +   A   +
Sbjct: 10  IKLTPELQEELVKVIRAGNYIETACAYVGI-NKTTFYDWLKRGAREKERLAKNPNARPKK 68

Query: 76  LDLLAEELLE--EPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG--PRVSVES 131
            +    EL    E A    E+ +     K  +   +   + LE+   +++G   R++ + 
Sbjct: 69  SEQPFVELSNAVEKALAQAEIRDVAIIGKAAEENWQAAAWRLERKFPERWGRKERLTADL 128

Query: 132 KHTI 135
            H+ 
Sbjct: 129 NHSG 132


>gi|326790074|ref|YP_004307895.1| Fis family transcriptional regulator [Clostridium lentocellum DSM
          5427]
 gi|326540838|gb|ADZ82697.1| helix-turn-helix Fis-type [Clostridium lentocellum DSM 5427]
          Length = 139

 Score = 44.1 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 1  MSNLVKKAKKAVRAKK--GCIYYSPEL----FAGILDQVANGKALGHVLRKVGMPKYSTF 54
          M+   K+  K  + +   G   Y  EL       I + ++NG         +G+P  ST 
Sbjct: 1  MAREYKRGYKQDKPRNADGTFAYCEELEQRQIDMIHELISNGGHKTKACETLGIP-RSTL 59

Query: 55 YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTA 91
          Y+W+  + K ++AY  A +     L EE L +   T 
Sbjct: 60 YKWL-DNEKFKKAYQTACER----LYEEGLSDAIKTT 91


>gi|255009806|ref|ZP_05281932.1| hypothetical protein Bfra3_11766 [Bacteroides fragilis 3_1_12]
 gi|313147593|ref|ZP_07809786.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313136360|gb|EFR53720.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 176

 Score = 43.7 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 20 YYSPELFAGILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+ ++   I   + A+   +  V R  G+   STF+ W     +  E   +A   R++ 
Sbjct: 3  KYNTKIVETICSLIRADSYTIAEVCRLSGI-SESTFHEWKASKPEFSECIKKAEAARMEF 61

Query: 79 LAEE 82
             E
Sbjct: 62 FVTE 65


>gi|218290758|ref|ZP_03494840.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239296|gb|EED06495.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 146

 Score = 43.7 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 14/130 (10%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK-DLKLQEAYTEALQCRLDL 78
             +PE+   I D +  G  +       G+    T Y W+K+ + +    Y   L      
Sbjct: 13  KLTPEVEKKICDAIRAGAYIETAAAYAGV-SKQTLYTWMKRGNAQKSGIYRRFLDAIEKA 71

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYG--PRVSVESKHTID 136
           LAE           E+ + +   +  +   +   + LE+   +++    R++V++ H+  
Sbjct: 72  LAES----------EMRDLIIIGRAAEENWQAAAWRLERKFPERWARKDRMTVDTHHSGS 121

Query: 137 LRPAIERLRE 146
           +   ++ + E
Sbjct: 122 VNLNVQYVAE 131


>gi|291513660|emb|CBK62870.1| hypothetical protein AL1_01560 [Alistipes shahii WAL 8301]
          Length = 172

 Score = 43.3 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 20 YYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+ ++   I   +A +   +  V R V +   ST+Y WI +  +  E   +A   R+  
Sbjct: 6  KYNKKIAEKICSLIATDTYTVAEVCRMVKISD-STYYDWITRFPEFSENIKKAEAERMAF 64

Query: 79 LAEE 82
             E
Sbjct: 65 FVAE 68


>gi|296169537|ref|ZP_06851157.1| cytochrome P450 family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895803|gb|EFG75498.1| cytochrome P450 family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 447

 Score = 41.0 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 57  WIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELAN-----PVFYSKMRDRKQRMG 111
           W+ +    ++  +      LD   EE L    P   +         V    M++ ++   
Sbjct: 260 WLSEHPDERDRLSRDRAVLLDPATEEFLRFFTPAPGDGRTIADEIEVDGVTMQEGQRLWL 319

Query: 112 TFLLEKLSNQKYG--PRVSVESKH 133
           ++ +     + +    ++ ++ K 
Sbjct: 320 SWAMANRDPRLFDQPDQIVLDRKG 343


>gi|240170404|ref|ZP_04749063.1| cytochrome P450 superfamily protein [Mycobacterium kansasii ATCC
           12478]
          Length = 448

 Score = 41.0 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 55  YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKM-----RDRKQR 109
             W+ ++ + +E  +   +  LD   EE L    P   +        ++     ++ ++ 
Sbjct: 260 LEWLSENPEQRELLSRQRETLLDSATEEFLRYFTPAPGDGRTFADDVELDGLHFKEGERL 319

Query: 110 MGTFLLEKLSNQKY--GPRVSVESKH 133
             ++ +       +    +V ++ K 
Sbjct: 320 WISWAMANRDPAVFPDPDKVILDRKG 345


>gi|108759650|ref|YP_629470.1| hypothetical protein MXAN_1211 [Myxococcus xanthus DK 1622]
 gi|108463530|gb|ABF88715.1| hypothetical protein MXAN_1211 [Myxococcus xanthus DK 1622]
          Length = 158

 Score = 40.6 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL-KLQEAYTE--ALQCRL 76
             +PEL   I + + +G         VG+    T  RW  +   + +  Y E      R 
Sbjct: 6   KLTPELQQQICEHLRSGLFRRAAAGLVGV-DEQTVSRWFHRGASEARGLYREFFVAVNRA 64

Query: 77  DLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTID 136
           +    E ++    T +  A             +   +LL +   + YG R +VE+K   D
Sbjct: 65  EA---EFMQGATETLQAAAT---------TNPKHVQWLLSRRFPELYGRRDNVEAKSPED 112

Query: 137 LRPAIERLRE 146
                  LRE
Sbjct: 113 QAADTAALRE 122


>gi|126437880|ref|YP_001073571.1| cytochrome P450 [Mycobacterium sp. JLS]
 gi|126237680|gb|ABO01081.1| cytochrome P450 [Mycobacterium sp. JLS]
          Length = 451

 Score = 40.2 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 55  YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELAN-----PVFYSKMRDRKQR 109
             W+ +    +   +      L+   EE L    P   +         +  +++R+ ++ 
Sbjct: 260 LEWLSEHPDERTRLSRERDTLLNPATEEFLRYFTPAPGDGRTIAEDMALGDAELREGQRL 319

Query: 110 MGTFLLEKLSNQKYG--PRVSVESKH 133
             ++ +       +    RV ++ K 
Sbjct: 320 WLSWAMANRDPAVFTEPDRVVLDRKG 345


>gi|120405830|ref|YP_955659.1| cytochrome P450 [Mycobacterium vanbaalenii PYR-1]
 gi|119958648|gb|ABM15653.1| cytochrome P450 [Mycobacterium vanbaalenii PYR-1]
          Length = 450

 Score = 40.2 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 55  YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELAN-----PVFYSKMRDRKQR 109
             W+ +    +E  +      LD   EE L    P   +         V    +++ ++ 
Sbjct: 263 LEWLSQHPDERERLSRDRDTLLDPATEEFLRYFTPAPGDGRTVAEDIEVDGVVLKEGERL 322

Query: 110 MGTFLLEKLSNQKYGP 125
             ++ +       +  
Sbjct: 323 WLSWAMANRDPALFQN 338


>gi|108801899|ref|YP_642096.1| cytochrome P450 [Mycobacterium sp. MCS]
 gi|119871051|ref|YP_941003.1| cytochrome P450 [Mycobacterium sp. KMS]
 gi|108772318|gb|ABG11040.1| cytochrome P450 [Mycobacterium sp. MCS]
 gi|119697140|gb|ABL94213.1| cytochrome P450 [Mycobacterium sp. KMS]
          Length = 451

 Score = 39.8 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 55  YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELAN-----PVFYSKMRDRKQR 109
             W+ +    +   +      L+   EE L    P   +         +  +++R+ ++ 
Sbjct: 260 LEWLSEHPDERTRLSRERDTLLNPATEEFLRYFTPAPGDGRTIAEDMALGDAELREGQRL 319

Query: 110 MGTFLLEKLSNQKYG--PRVSVESKH 133
             ++ +       +    R+ ++ K 
Sbjct: 320 WLSWAMANRDPAVFTEPDRIVLDRKG 345


>gi|310818179|ref|YP_003950537.1| hypothetical protein STAUR_0906 [Stigmatella aurantiaca DW4/3-1]
 gi|309391251|gb|ADO68710.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 158

 Score = 39.4 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 20  YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-----LQEAYTEALQC 74
             +PE+   I D + +G         VG+    T  RW  +         +E Y    + 
Sbjct: 6   KLNPEIQKQICDHLRSGLFRRAAAGLVGV-DEQTISRWYHRGASEARGLFREFYVAVNRA 64

Query: 75  RLDLL--AEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESK 132
             + +  A E L+  + +                  +   +LL +   + YG R +VE+K
Sbjct: 65  EAEFMQGATETLQAASTSNP----------------KHVQWLLSRRFPELYGRRDNVEAK 108

Query: 133 HTIDLRPAIERLRE 146
              D       LRE
Sbjct: 109 SPEDQAADTAALRE 122


>gi|71754745|ref|XP_828287.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833673|gb|EAN79175.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 568

 Score = 39.1 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 11/140 (7%)

Query: 44  RKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKM 103
           ++        F R ++++ +      EA +     L E +  E    ++ LA+      +
Sbjct: 277 KRHHQANMEAFCRQLRQEEESFRQRMEARESERLQLLEHIEAEEQWLSQRLADRERQRAL 336

Query: 104 RDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKS 163
               +       E+   + Y   V  E +        +    + Y+  + +++E+   K 
Sbjct: 337 EIEAKER----AEREQRELYREHVEAEEE-------LLRNRLQQYEASRKMEAEKARQKE 385

Query: 164 TEKPLEIVESSIAEQSIIEH 183
            E   E+ E  +AE+ +I  
Sbjct: 386 KEDREELYEHVLAEEQLIRQ 405


>gi|183984685|ref|YP_001852976.1| cytochrome P450 188A3 Cyp188A3 [Mycobacterium marinum M]
 gi|183178011|gb|ACC43121.1| cytochrome P450 188A3 Cyp188A3 [Mycobacterium marinum M]
          Length = 454

 Score = 39.1 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 55  YRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELAN-----PVFYSKMRDRKQR 109
             W+ +    +E         +D   EE L    P   +               ++ ++ 
Sbjct: 266 LEWLSEHPDERERLWRNRDTLIDSATEEFLRYFTPAPGDGRTFSDDVEFDGIHFKEGERL 325

Query: 110 MGTFLLEKLSNQKYGP 125
             ++ +     Q +  
Sbjct: 326 WISWAMANRDPQVFPD 341


>gi|114571303|ref|YP_757983.1| transposase IS3/IS911 family protein [Maricaulis maris MCS10]
 gi|114341765|gb|ABI67045.1| transposase IS3/IS911 family protein [Maricaulis maris MCS10]
          Length = 79

 Score = 39.1 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70
           +S E    IL +   G A   V R+ G+   +TFY+W  K   L  +Y  
Sbjct: 5  KFSEEQIIAILAEQERGMATSGVCRRHGV-SSATFYKWKAKFGGLDVSYAR 54


>gi|331701777|ref|YP_004398736.1| hypothetical protein Lbuc_1419 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129120|gb|AEB73673.1| hypothetical protein Lbuc_1419 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 162

 Score = 38.7 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 28  GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86
            I+  +A +G     + +K+G+   STFY+W+ ++  L EA     +   D   E  L +
Sbjct: 19  SIISSMARDGMTSEEIAKKIGI-APSTFYKWMHENQDLSEAVMANKEM-ADRTVEAALYQ 76

Query: 87  PAPTAEELANPVFYSKMR---------DRKQRMGTFLLEKLSNQKYGPRVSVESKHTID 136
            A   +   + V  S  R              +  + L     +K+  +  +E    +D
Sbjct: 77  LATGFDYYEDKVSASGKRLKNVVQHESPNIAAIKMW-LNNRQPKKWRDKREIELSGRVD 134


>gi|150375754|ref|YP_001312350.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium medicae WSM419]
 gi|150030301|gb|ABR62417.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium medicae WSM419]
          Length = 342

 Score = 38.7 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYR-WIKKDLKLQEAYTEALQCRLDLLAEE 82
           ++ A ILD +  G+  G +    GM  Y  F   W+ K  +L +   +A +   + ++  
Sbjct: 250 DVNANILDMIKAGEVFGSINPNQGMQGYMGFLMLWLAKHPELIDPMNDAKRSGFNPMSIP 309

Query: 83  LLEEPAPT-AEELANPVFYSKMRDRK 107
           +++        E A+  ++ K   R+
Sbjct: 310 VVDNGLSIVTAENADDFYWDKYLKRR 335


>gi|332828192|gb|EGK00904.1| hypothetical protein HMPREF9455_02693 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 218

 Score = 38.7 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 20 YYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+ EL   I   +A    ++  + +  G+   +TFY+W +++    +   +A+  R ++
Sbjct: 3  KYNQELAERITSLMAEELCSVSDICKATGI-SRNTFYKWKRENPDFDKDVEDAMSYRNEV 61

Query: 79 L 79
          L
Sbjct: 62 L 62


>gi|295691410|ref|YP_003595103.1| hypothetical protein Cseg_4074 [Caulobacter segnis ATCC 21756]
 gi|295433313|gb|ADG12485.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
          Length = 658

 Score = 38.7 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 45  KVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD-LLAEELLEEPAPTAEELANPVFYSKM 103
           + GM + +T+  W     ++   Y +A +   D  L  E+ +  A +A+         ++
Sbjct: 250 RPGMLEATTYTGWDDISRRMAPLYAKASELSADSSLRPEIAQIAAASADPKVRAFKALQL 309

Query: 104 RDRKQR 109
            + K R
Sbjct: 310 VEDKTR 315


>gi|153010395|ref|YP_001371609.1| putative ABC transporter periplasmic sugar-binding protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|151562283|gb|ABS15780.1| putative ABC transporter periplasmic sugar-binding protein
           [Ochrobactrum anthropi ATCC 49188]
          Length = 343

 Score = 38.3 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTF-YRWIKKDLKLQEAYTEALQCRLDLLAEE 82
           ++ A ILD +  G+  G +    GM  Y  F   W+ K  +L +   +A +   + ++  
Sbjct: 251 DVNANILDMIKAGEVFGSINPNQGMQGYMGFMLLWLAKHPELIDPMNDAKRSGFNPMSIP 310

Query: 83  LLEEPAPT-AEELANPVFYSKMRDRK 107
           +++        E A+  ++ K   R+
Sbjct: 311 VVDNGLSIVTAENADDFYWDKYLKRR 336


>gi|229495719|ref|ZP_04389447.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
            35406]
 gi|229317293|gb|EEN83198.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
            35406]
          Length = 1828

 Score = 37.9 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 55   YRWIKKDLKLQEAYTEALQCR--LDLLAE-----ELLEEPAPTAEEL------------- 94
            +R+  K  +L   Y +    R   D+  +     E++    PT E+              
Sbjct: 1214 FRYFIKVPELAAFYAQITDYRTAQDIGIDRPEKNEIMHNIPPTPEQEEFITKLVEFAKTG 1273

Query: 95   -ANPVFYSKMRDRKQRMGTFLLEKLS-----------NQKYGPRVSVESKHTIDLRPAIE 142
             A  +   K+ +R+++    +   ++             +YG  V  ++ H         
Sbjct: 1274 NAELLGRPKLSEREEKAKMLIATDMARKMSLDLRLIDPNRYGDHVDNKASH------CAA 1327

Query: 143  RLREHYKHLKPIDSERIP--HKSTEKPLEIVESSIAEQSIIE 182
            ++ E+Y+        +       T KP E    S  ++ ++E
Sbjct: 1328 KIAEYYRKFNEQKGTQFVFSDLGTYKPGEWNPYSEIKRKLVE 1369


>gi|296444686|ref|ZP_06886650.1| hypothetical protein MettrDRAFT_0366 [Methylosinus trichosporium
           OB3b]
 gi|296257954|gb|EFH05017.1| hypothetical protein MettrDRAFT_0366 [Methylosinus trichosporium
           OB3b]
          Length = 328

 Score = 37.9 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 14  AKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72
             +  + Y P      +   ANG  +  +  ++G+    T Y W ++  +  +A   + 
Sbjct: 84  PGRPTL-YRPTFAQIAVRLGANGHTIAGIAGRLGV-TRETVYEWARRHPEFSDALQRSK 140


>gi|326404206|ref|YP_004284288.1| putative transposase [Acidiphilium multivorum AIU301]
 gi|325051068|dbj|BAJ81406.1| putative transposase [Acidiphilium multivorum AIU301]
          Length = 100

 Score = 37.5 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRW-----------IKKDLKLQEAY 68
           +S E   GIL +  +G +   V R+ G+   +TFY+W            ++  +L++  
Sbjct: 5  RFSEEQIIGILKEQESGMSTAEVCRRHGI-SSATFYKWKAKFGGLEVSDARRLKQLEDEN 63

Query: 69 TEALQCRLDLLAEE 82
              +   D + + 
Sbjct: 64 ARLKRLLADAVLDN 77


>gi|307299920|ref|ZP_07579705.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti BL225C]
 gi|306904809|gb|EFN35392.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti BL225C]
          Length = 342

 Score = 37.5 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYR-WIKKDLKLQEAYTEALQCRLDLLAEE 82
           ++ A ILD +  G+  G +    GM  Y  F   W+ K  +L +   +A +   + ++  
Sbjct: 250 DVNANILDMIKAGEVFGSINPNQGMQGYMGFLLLWLAKHPELIDPMNDAKRSGFNPMSIP 309

Query: 83  LLEEPAPT-AEELANPVFYSKMRDRK 107
           +++        + A+  ++ K   R+
Sbjct: 310 VVDNGLSIVTADNADDFYWDKYLKRR 335


>gi|307316728|ref|ZP_07596171.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti AK83]
 gi|306897926|gb|EFN28669.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti AK83]
          Length = 342

 Score = 37.5 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYR-WIKKDLKLQEAYTEALQCRLDLLAEE 82
           ++ A ILD +  G+  G +    GM  Y  F   W+ K  +L +   +A +   + ++  
Sbjct: 250 DVNANILDMIKAGEVFGSINPNQGMQGYMGFLLLWLAKHPELIDPMNDAKRSGFNPMSIP 309

Query: 83  LLEEPAPT-AEELANPVFYSKMRDRK 107
           +++        + A+  ++ K   R+
Sbjct: 310 VVDNGLSIVTADNADDFYWDKYLKRR 335


>gi|16264234|ref|NP_437026.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti 1021]
 gi|15140359|emb|CAC48886.1| putative ABC transporter periplasmic sugar-binding protein
           [Sinorhizobium meliloti 1021]
          Length = 333

 Score = 37.5 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYR-WIKKDLKLQEAYTEALQCRLDLLAEE 82
           ++ A ILD +  G+  G +    GM  Y  F   W+ K  +L +   +A +   + ++  
Sbjct: 241 DVNANILDMIKAGEVFGSINPNQGMQGYMGFLLLWLAKHPELIDPMNDAKRSGFNPMSIP 300

Query: 83  LLEEPAPT-AEELANPVFYSKMRDRK 107
           +++        + A+  ++ K   R+
Sbjct: 301 VVDNGLSIVTADNADDFYWDKYLKRR 326


>gi|301161275|emb|CBW20813.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1828

 Score = 37.5 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 55   YRWIKKDLKLQEAYTEALQCR--LDLLAE-----ELLEEPAPTAEELA------------ 95
            +R+  K  +L   Y +    R   D+  +     E++    PT E+ A            
Sbjct: 1214 FRYFIKVPELAAFYAQITDYRTAQDIGIDRPEKNEIMHNIPPTPEQEAFIAKLVEFAKTG 1273

Query: 96   --NPVFYSKMRDRKQRMGTFLLEKLS-----------NQKYGPRVSVESKHTIDLRPAIE 142
                +   K+ +R+++    +   ++             +YG  V  ++ H         
Sbjct: 1274 NAELLGREKLSEREEKAKMLIATDMARKMSLDLRLIDPNRYGDHVDNKASH------CAA 1327

Query: 143  RLREHYKHLKPIDSERIP--HKSTEKPLEIVESSIAEQSIIE 182
            ++ E+Y+        +       T KP E    S  ++ ++E
Sbjct: 1328 KIAEYYQKFNEQKGTQFVFSDLGTYKPGEWNPYSEIKRKLVE 1369


>gi|288924999|ref|ZP_06418935.1| metalloendopeptidase PepO [Prevotella buccae D17]
 gi|288338189|gb|EFC76539.1| metalloendopeptidase PepO [Prevotella buccae D17]
          Length = 679

 Score = 37.5 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 89  PTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHY 148
           P     +    + ++++   +    +L++L ++KY P+ +VE K +   + A++ +R + 
Sbjct: 57  PLPPAYSRFGSFDQLQEDNNKRINSILKELQSKKY-PKGTVEQKLSDFYKLAMDSVRRNK 115

Query: 149 KHLKPIDSERIPHKSTEKPLEIVES 173
           + + P+ +     ++      + + 
Sbjct: 116 EGIAPVKALLDEMEAATTKEALQKL 140


>gi|167577457|ref|ZP_02370331.1| BopA protein [Burkholderia thailandensis TXDOH]
          Length = 513

 Score = 37.1 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 4   LVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK 63
           L         AK G + Y           +A  + L     +  +P  +    WI +D  
Sbjct: 287 LRDARTVKEGAKTGELKYQMISKKENCASMAL-RVLRAGGAEHFVPYAAA---WISEDPN 342

Query: 64  LQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKY 123
              AY  A+Q R+D L ++  +     A          ++R        +     +    
Sbjct: 343 RAHAYARAVQARIDALNQQRADVERHCA----------RLRGSASVRQAWRAFSEAGNAS 392

Query: 124 GPRVSVES-KHTIDLRPAIERLREHYKHLKPIDS 156
           G  ++ E+ +          RL EH + ++ I +
Sbjct: 393 GSPLADEAGRGRASAHTRQARLDEHAREVERIGA 426


>gi|148243905|ref|YP_001220144.1| transposase IS3/IS911 family protein [Acidiphilium cryptum JF-5]
 gi|146400468|gb|ABQ29002.1| transposase IS3/IS911 family protein [Acidiphilium cryptum JF-5]
          Length = 100

 Score = 37.1 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRW-----------IKKDLKLQEAY 68
           +S E   GIL +  +G +   V R+ G+   +TFY+W            ++  +L++  
Sbjct: 5  RFSEEQIIGILKEQESGMSTAEVCRRHGI-SSATFYKWKAKFGGLEVSDARRLKQLEDEN 63

Query: 69 TEALQCRLDLLAEE 82
              +   D + + 
Sbjct: 64 ARLKRLLADAVLDN 77


>gi|332829030|gb|EGK01694.1| hypothetical protein HMPREF9455_01842 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 166

 Score = 37.1 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 20 YYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQC 74
           Y+ ++   I D ++ +   +  +  KV +   ST+Y W+K   +  E   +A   
Sbjct: 3  KYNQKIVNRICDLISKDSYTIAEICEKVKI-SESTYYEWLKTKSEFSEDIKKAQDK 57


>gi|300741774|ref|ZP_07071795.1| putative nuclease SbcCD, D subunit [Rothia dentocariosa M567]
 gi|300380959|gb|EFJ77521.1| putative nuclease SbcCD, D subunit [Rothia dentocariosa M567]
          Length = 395

 Score = 37.1 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 101 SKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPID 155
            ++     R+  + +  L+ + YG  + VE  H   L     R+RE  +     D
Sbjct: 115 VELIRDDIRVRIYAIPYLNPRYYGRHLDVEPTHAAVLGEVCTRIREDNEKRNAGD 169


>gi|188993950|ref|YP_001928202.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
 gi|188593630|dbj|BAG32605.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
          Length = 1828

 Score = 36.7 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 40/162 (24%)

Query: 55   YRWIKKDLKLQEAYTEALQCRL--DLLAE-----ELLEEPAPTAEEL---ANPVFYSK-- 102
            +R+  K  +L   Y +    R   D+  +     E++    PT E+    A  V ++K  
Sbjct: 1214 FRYFIKVPELAAFYAQITDYRTAKDIGIDRPEKNEIMHNIPPTPEQEEFIAKLVEFAKTG 1273

Query: 103  ---------MRDRKQRMGTFLLEKLSNQ-----------KYGPRVSVESKHTIDLRPAIE 142
                     + +R+++    +   ++ +           KYG  V  ++ H         
Sbjct: 1274 NAELLGRAPLSEREEKAKMLIATDMARKMSLDLRLIDPDKYGDHVDNKASH------CAA 1327

Query: 143  RLREHYKHLKPIDSERIP--HKSTEKPLEIVESSIAEQSIIE 182
            ++ E+Y+        +       T KP E    S  ++ ++E
Sbjct: 1328 KIAEYYRKFNEQKGTQFVFSDLGTYKPGEWNPYSEIKRKLVE 1369


>gi|330794621|ref|XP_003285376.1| hypothetical protein DICPUDRAFT_149273 [Dictyostelium purpureum]
 gi|325084646|gb|EGC38069.1| hypothetical protein DICPUDRAFT_149273 [Dictyostelium purpureum]
          Length = 2141

 Score = 36.7 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 52   STFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMG 111
             + +++  +  + ++ Y +      D + + ++        +L   +F         ++ 
Sbjct: 1790 KSIFKFYLQCFEFRKKY-KDRVKNADKIEDHIISSFMTLVMKLNENLFK----PLFIKVL 1844

Query: 112  TFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIV 171
             + L     Q+ G     ES+   +     E++    K +    S         KP++  
Sbjct: 1845 DWALTPQQQQQNGNHHDEESEEDDNSDSEEEQVSNKKKKVMNGKS---------KPVQQQ 1895

Query: 172  ESSIA 176
            E S  
Sbjct: 1896 EKSKD 1900


>gi|167750592|ref|ZP_02422719.1| hypothetical protein EUBSIR_01569 [Eubacterium siraeum DSM 15702]
 gi|167656518|gb|EDS00648.1| hypothetical protein EUBSIR_01569 [Eubacterium siraeum DSM 15702]
          Length = 379

 Score = 36.7 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL-QCRLDLL 79
           Y+ E    ++D+V +G+   H+L   G+P  STFY W++   + Q A        R   L
Sbjct: 4   YTQEEKQAVIDRVISGEPSAHILADTGIP-KSTFYSWLRIYQEEQNAANRRKVDIRNFHL 62

Query: 80  AEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
            E  +       E L +     +      R   +  E+L   KY   V
Sbjct: 63  LENKVARLESIVEILKSAPCTPR---APLRQRLYAAEQLYG-KYNVHV 106


>gi|332828952|gb|EGK01635.1| hypothetical protein HMPREF9455_02167 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 236

 Score = 36.7 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y  ++   I+  +     ++  + +   +    TFY W K+  + +EA  EA+  R D
Sbjct: 1   MKYKEKIATEIIRMIEQDLCSISEICKSFKI-SRKTFYEWKKEKPEFKEAVEEAIDHRED 59

Query: 78  LLA------------------EELLEEP---APTAEELANPVFYSKMRDRKQRMGTFLLE 116
           ++                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VMIASARIGLKQLLEGYVQKKEKITYVPDKNDPVNDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    +     RP +  +++     +
Sbjct: 120 REERKKDKDRLLASER-----RPLVIEVQDEETRRQ 150


>gi|332883330|gb|EGK03613.1| hypothetical protein HMPREF9456_01680 [Dysgonomonas mossii DSM
          22836]
          Length = 224

 Score = 36.7 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 20 YYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+  L   I+  +  +  ++  +   + +    TFY W K   +  EA   A++CR D 
Sbjct: 3  KYTERLVERIISFIEEDTYSISEICNALNI-NRKTFYEWRKTKPEFNEAVERAMECRDDK 61

Query: 79 L 79
          L
Sbjct: 62 L 62


>gi|296412184|ref|XP_002835805.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629600|emb|CAZ79962.1| unnamed protein product [Tuber melanosporum]
          Length = 456

 Score = 36.7 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 79  LAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFL-------LEKLSNQKYGPRVSVES 131
           +AEELL++ AP AE   N +         ++            + +    +YG  V  + 
Sbjct: 147 IAEELLDDVAPRAEGERNSIGIDGGGGGGEQYIYNEGQFNGEYIGRRYANEYGEHVQEDG 206

Query: 132 KH--TIDLRPAIERLREHYKHLKPIDSERIPHKSTEKP--LEIVESSIAEQSIIEHN 184
            H  T +    + RL E       ++SE    K+ ++   + + +    E SI+  N
Sbjct: 207 DHRMTGEEEGILSRLEELRAENTRLESELATLKAQQEAELVSLRQVKDGETSIVRSN 263


>gi|56552762|ref|YP_163601.1| beta-lactamase domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241762498|ref|ZP_04760575.1| beta-lactamase domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260753508|ref|YP_003226401.1| beta-lactamase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56544336|gb|AAV90490.1| beta-lactamase domain protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373000|gb|EER62667.1| beta-lactamase domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258552871|gb|ACV75817.1| beta-lactamase domain protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 546

 Score = 36.7 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 24  ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK------DLKLQEAYTEALQCRLD 77
            L A  +  V + +A+ HV    G P     YRWI+         +L+    +A      
Sbjct: 345 ALAAKGIRMVTDRQAMIHVSGHPGRPDLQAMYRWIRPEMLIPVHGELRHMAEQARLGLAT 404

Query: 78  LLAEELLEEPAPTAE-ELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTID 136
            +   L++            PVF S     +  +   ++   +    G R  +     I 
Sbjct: 405 GIPRSLVQGNGDLIRLAPKGPVFVSHENTGRLLLDGDVILSANGPTIGERRKMAINGLIS 464

Query: 137 LRPAIERLREHYKHLKPIDSERIPHKS 163
           +  A+++   H K    I    +P ++
Sbjct: 465 VGLAVDK-HNHLKGHPTISLHGVPIEA 490


>gi|332828978|gb|EGK01654.1| hypothetical protein HMPREF9455_02054 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 231

 Score = 36.4 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y  ++   I+  +     ++  + +   +    TFY W K   +  EA  EA+  R D
Sbjct: 1   MKYKEKIATEIIRMIEQDLCSISEICKSYKI-SRKTFYEWKKVKPEFGEAVEEAIDHRED 59

Query: 78  LLA------------------EELLEEP---APTAEELANPVFYSKMRDRKQRMGTFLLE 116
           ++                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VMIASARIGLKQLLEGYVQKKEKITYVPDKNDPVNDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    +     RP +  +++     +
Sbjct: 120 REERKKDKDRLLASER-----RPLVIEVQDEETRRQ 150


>gi|332827847|gb|EGK00582.1| hypothetical protein HMPREF9455_03225 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 246

 Score = 36.4 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y  ++   I+  +     ++  + +   +    TFY W K+  + +EA  EA+  R D
Sbjct: 1   MKYKEKIATEIIRMIEQDLCSISEICKSFKI-SRKTFYEWKKEKPEFKEAVEEAIDHRED 59

Query: 78  LLA------------------EELLEEP---APTAEELANPVFYSKMRDRKQRMGTFLLE 116
           ++                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VMIASARIGLKQLLEGYVQKKEKVTYVPDKNDPLNDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    +     RP +  +++     +
Sbjct: 120 REERKKDKDRLLASER-----RPLVIEVQDEETRRQ 150


>gi|160933467|ref|ZP_02080855.1| hypothetical protein CLOLEP_02313 [Clostridium leptum DSM 753]
 gi|156867344|gb|EDO60716.1| hypothetical protein CLOLEP_02313 [Clostridium leptum DSM 753]
          Length = 381

 Score = 36.4 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 19 IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE-----------A 67
          + ++ E     + +  +G+ +  +  +  +P  STFYRWI+   +               
Sbjct: 1  MKFTKEEKIAFVKRYQDGETVIKICNENQIP-RSTFYRWIQDYQQTVTDTGTVVTPQEFQ 59

Query: 68 YTEALQCRLDLL 79
          Y +    +L+ +
Sbjct: 60 YLKRRINKLEDM 71


>gi|326387445|ref|ZP_08209054.1| beta-lactamase-like protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208101|gb|EGD58909.1| beta-lactamase-like protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 550

 Score = 36.0 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 33  VANGKALGHVLRKVGMPKYSTFYRWIKK------DLKLQEAYTEALQCRLDLLAEELLEE 86
           V + +++ HV    G P+    Y W++         +++    +A   R + +A  +L++
Sbjct: 354 VTDRQSMIHVSGHPGRPELMKLYEWLRPQMLVPVHGEIRHMDEQARLGRSEGIARTILQK 413

Query: 87  ------PAPTAEELANPVFYSKMRDR 106
                  AP        V   ++   
Sbjct: 414 NGDLVRLAPNGPHKITEVRAGRLVLD 439


>gi|197119615|ref|YP_002140042.1| hypothetical protein Gbem_3249 [Geobacter bemidjiensis Bem]
 gi|197088975|gb|ACH40246.1| hypothetical protein Gbem_3249 [Geobacter bemidjiensis Bem]
          Length = 213

 Score = 36.0 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 5   VKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           VKK   A R +K    Y       I              +  G+    TFY W+  D K 
Sbjct: 6   VKKGGAAPRQRKFLCAYGESSTFNI----------SEACKAAGI-GRRTFYNWLTDDSKF 54

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKM 103
           +  + E  + RLD + E  L   A   ++    +F +K 
Sbjct: 55  KTDFEELTESRLDAI-ESALHSRAVIEKDTTALIFLAKT 92


>gi|290968650|ref|ZP_06560188.1| hypothetical protein HMPREF0889_0290 [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781303|gb|EFD93893.1| hypothetical protein HMPREF0889_0290 [Megasphaera genomosp. type_1
           str. 28L]
          Length = 195

 Score = 35.6 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 36  GKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY---------------TEALQCRLDLLA 80
           G +   +  K+G+      Y W+KK  + ++ +               T+  + +   + 
Sbjct: 57  GWSAEKIADKIGV-SKQCVYGWLKKYPEFKKIWYECVDDIIYTAEKGMTDLTRPQTRKIK 115

Query: 81  EELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRP- 139
           E +                         +   ++LE  +  +Y  R SV+    I +   
Sbjct: 116 ETITYTDKDGHITGRRERETVTTDPPDFKACKYMLENFAPDEYKDRQSVQVSGDISVTAI 175

Query: 140 -AIERLREHYKHLKPIDSER 158
                L +  K  K  D E+
Sbjct: 176 DIAGILAKARKKAKENDDEK 195


>gi|282878961|ref|ZP_06287725.1| peptidase family M13 [Prevotella buccalis ATCC 35310]
 gi|281298960|gb|EFA91365.1| peptidase family M13 [Prevotella buccalis ATCC 35310]
          Length = 667

 Score = 35.6 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 89  PTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHY 148
           P     +    + ++ +   +    +L +L  + Y  + ++E K +   + A++  R + 
Sbjct: 45  PLPAAYSRFGSFDQLAEDNNKRINTILGELQKKTY-KKGTMEQKLSDFYKLAMDADRRNK 103

Query: 149 KHLKPIDSERIPHKS--TEKPLEIVESSIAEQ 178
           + +KP+       ++  T+K LE ++   A Q
Sbjct: 104 EGIKPVKPLLDEMEAAKTKKDLEQLQLKYAAQ 135


>gi|326404151|ref|YP_004284233.1| putative transposase for insertion sequence element [Acidiphilium
          multivorum AIU301]
 gi|325051013|dbj|BAJ81351.1| putative transposase for insertion sequence element [Acidiphilium
          multivorum AIU301]
          Length = 88

 Score = 35.6 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRW-----------IKKDLKLQEAY 68
           +S E   GIL +  +G +   V R+ G+   +TFY+W            ++  +L++  
Sbjct: 5  RFSEEQIIGILKEQESGMSTAEVCRRHGI-SSATFYKWKAKFGGLEVSDARRLKQLEDEN 63

Query: 69 TEALQCRLDLLAEE 82
              +   D + + 
Sbjct: 64 ARLKRLLADAVLDN 77


>gi|218508778|ref|ZP_03506656.1| putative phage-related protein [Rhizobium etli Brasil 5]
          Length = 75

 Score = 35.6 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 93  ELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHL 151
           E    +  S++R   +    ++ EKL  +KYG +V +E   T  +   +E +    + L
Sbjct: 16  ENGEALRRSQLRISTR---QWIAEKLKPKKYGAKVELEHGVTSGVAELLEAINGKTRGL 71


>gi|120603621|ref|YP_968021.1| transposase IS3/IS911 family protein [Desulfovibrio vulgaris DP4]
 gi|120563850|gb|ABM29594.1| transposase IS3/IS911 family protein [Desulfovibrio vulgaris DP4]
          Length = 88

 Score = 35.6 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61
           ++ E   GIL Q   G  +  + R+ GM   +TFY+W  K 
Sbjct: 5  RFTEEKIIGILKQAEAGMTVTSLCRQHGMSD-ATFYKWRSKY 45


>gi|308488189|ref|XP_003106289.1| hypothetical protein CRE_15283 [Caenorhabditis remanei]
 gi|308254279|gb|EFO98231.1| hypothetical protein CRE_15283 [Caenorhabditis remanei]
          Length = 510

 Score = 35.6 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 124 GPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSIIEH 183
           G  V+   KH I+ +P I R  +    +     ++I  K TE+P E VE S  E+    +
Sbjct: 121 GELVATLQKHFINPKPTIPRRPQPKFTVTAEMRQKIALKDTEQP-ECVELSSDEEGRATN 179

Query: 184 NN 185
            N
Sbjct: 180 TN 181


>gi|332886223|gb|EGK06467.1| hypothetical protein HMPREF9456_00341 [Dysgonomonas mossii DSM
          22836]
          Length = 237

 Score = 35.2 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 20 YYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+  L   I+  +  +  ++  + + + + + S FY W  K  + ++A   A++ R + 
Sbjct: 3  KYTERLAEKIVSLIEEDTYSITEICKHLKITRKS-FYEWRDKKPEFRKAIEAAMESRDEA 61

Query: 79 LA 80
          LA
Sbjct: 62 LA 63


>gi|307205501|gb|EFN83818.1| USP6 N-terminal-like protein [Harpegnathos saltator]
          Length = 1089

 Score = 35.2 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 65  QEAYTEALQCRLDLLAE-ELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEK-LSNQK 122
           +E Y  A Q    L A   +LEE A  AE  A     ++ R  ++       E+ L  + 
Sbjct: 258 EERYARAKQENATLQARILMLEEAAKDAETRAEERLQAEQRRHREWACRLERERQLQLEN 317

Query: 123 YGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSIIE 182
           Y  ++      +  LR  I R+RE  +  +   + R+ +   E   E   +  +E+  + 
Sbjct: 318 YAIKLQAVELDSSSLRDEIARVREQLERARADKT-RLENDLQEARREADAARESERHAVS 376

Query: 183 HNN 185
             N
Sbjct: 377 RAN 379


>gi|332828274|gb|EGK00986.1| hypothetical protein HMPREF9455_02775 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 215

 Score = 35.2 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 20 YYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75
           Y  EL   I+  + +    +  V +  G+    TFY W+    + +    EA+  R
Sbjct: 3  KYGAELTEKIVSLIEDEFFTVSQVCKATGI-SRQTFYYWMDTKEEFRREIEEAMAHR 58


>gi|332884242|gb|EGK04510.1| hypothetical protein HMPREF9456_00837 [Dysgonomonas mossii DSM
          22836]
          Length = 237

 Score = 35.2 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 20 YYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDL 78
           Y+  L   I+  +  +  ++  + + + + + S FY W  K  + ++A   A++ R + 
Sbjct: 3  KYTERLAEKIVSLIEEDTYSITEICKHLKITRKS-FYEWRDKKPEFRKAIEAAIESRDET 61

Query: 79 LA 80
          LA
Sbjct: 62 LA 63


>gi|224543178|ref|ZP_03683717.1| hypothetical protein CATMIT_02378 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523965|gb|EEF93070.1| hypothetical protein CATMIT_02378 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1051

 Score = 35.2 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 58  IKKDLKLQEAYTEALQC--RLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLL 115
           +K++ +L+  Y E  +   R D+  EE +       ++    +   K    K +  + + 
Sbjct: 356 LKREPELRSKYEELKEKDNRADIKHEEFVRYCTQETDKTKKDLDNRKTLSDKTKEISDI- 414

Query: 116 EKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKH----LKPIDSERIPHKSTEKPLEIV 171
                 K+      +  H  + + ++ + +E  K     LK +D+E +  +S  K  ++ 
Sbjct: 415 -----NKHTDDSIEQLNHIKNSKKSLVKKQEEGKKELDTLKDVDTEAVVLESQRKDFKLK 469

Query: 172 ESS 174
             S
Sbjct: 470 VES 472


>gi|332828026|gb|EGK00748.1| hypothetical protein HMPREF9455_03022 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 236

 Score = 35.2 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y  ++   I+  +     ++  + +   +    TFY W K   +  EA  EA+  R D
Sbjct: 1   MKYKEKIATEIIRMIEQDLCSISEICKSFKI-SRKTFYEWKKVKPEFGEAVEEAIDHRED 59

Query: 78  LLA------------------EELLEEP---APTAEELANPVFYSKMRDRKQRMGTFLLE 116
           ++                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VMIASARIGLKQLLEGYVQKKEKITYVPDKNDPLNDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    +     RP +  +++     +
Sbjct: 120 REERKKDKDRLLASER-----RPLVIEVQDEETKRQ 150


>gi|325271819|ref|ZP_08138284.1| hypothetical protein G1E_03165 [Pseudomonas sp. TJI-51]
 gi|324103046|gb|EGC00428.1| hypothetical protein G1E_03165 [Pseudomonas sp. TJI-51]
          Length = 140

 Score = 34.8 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 8  AKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66
          A K   A +   Y   +    IL+   +G +L    +  G P Y T   W+       E
Sbjct: 2  ASKPAAAHQAKRYTQDDRRVIILEYFNSGLSLTKFCKVKGRPSYQTMKLWLCISPDFDE 60


>gi|140845|sp|P17985|YIA3_RHISP RecName: Full=Insertion element ISR1 uncharacterized 10 kDa
          protein A3
 gi|48671|emb|CAA29830.1| unnamed protein product [Rhizobium sp.]
          Length = 88

 Score = 34.8 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRW-----------IKKDLKLQEAY 68
           ++ E   GIL +   G A   V R+ G+   +TFY+W            ++   L++  
Sbjct: 5  RFTEEQIIGILREQEAGVATAEVCRRHGV-SSATFYKWKAKFGGLDVSEARRLKALEDEN 63

Query: 69 TEALQCRLDLLAEELL 84
              +   D + + + 
Sbjct: 64 ARLKRMLADAMLDNVA 79


>gi|289551570|ref|YP_003472474.1| hypothetical protein SLGD_02259 [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181101|gb|ADC88346.1| hypothetical protein SLGD_02259 [Staphylococcus lugdunensis
           HKU09-01]
          Length = 142

 Score = 34.4 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 9/104 (8%)

Query: 35  NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE-------P 87
           +G     + R  G+  + T  +W +   +  EA  +  +   D   E  L +        
Sbjct: 25  DGLTDEQIARNFGV-NFKTVMKWKEDHSEFMEAIKKGKEV-SDYELENALHKRATGYYYE 82

Query: 88  APTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVES 131
             T       V   K          F L+     KY  +V  E 
Sbjct: 83  EETVTNAGKVVKVKKYEHANPTSLIFALKNRLPHKYRDKVEQEI 126


>gi|332828769|gb|EGK01461.1| hypothetical protein HMPREF9455_02294 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 241

 Score = 34.4 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y  +  + I+        ++  + +   +    TFY W K   + +EA  EA+  R D
Sbjct: 1   MKYKEKTASEIIRMTEQDLCSISEICKSFKI-SRKTFYEWKKMKPEFKEAVEEAIDHRED 59

Query: 78  LLA------------------EELLEEP---APTAEELANPVFYSKMRDRKQRMGTFLLE 116
           ++                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VMIASARIGLKQLLEGYVQKKEKITYVPDKNDPVNDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    +     RP +  +++     +
Sbjct: 120 REERKKDKDRLLASER-----RPLVIEVQDEETKRQ 150


>gi|312891882|ref|ZP_07751386.1| transposase IS3/IS911 family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295615|gb|EFQ72780.1| transposase IS3/IS911 family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 103

 Score = 34.4 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 19/107 (17%)

Query: 6   KKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ 65
           KK + A R       Y  E    +L  ++ G+++  V   +G+      +RW        
Sbjct: 4   KKTETARR------KYDDEFKRDVLKMISGGRSVQDVSNSLGLNTGM-VHRW-------- 48

Query: 66  EAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGT 112
                  Q + D+ ++ L E   P      + +  +++R+ +Q    
Sbjct: 49  ----RGEQNQADVTSKSLAEGHGPEVSRGDHELVKARLREVEQERDI 91


>gi|85374276|ref|YP_458338.1| hypothetical protein ELI_07245 [Erythrobacter litoralis HTCC2594]
 gi|84787359|gb|ABC63541.1| hypothetical protein ELI_07245 [Erythrobacter litoralis HTCC2594]
          Length = 302

 Score = 34.0 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTF-YRWIKKDLKLQEAYTEALQCRLDLL 79
           ++PE     +  +A+  ++    + V M     +  R + +    + A+  AL+C +  L
Sbjct: 34  WTPERQRDFIAALADTGSVEAACKAVNMSTVGAYRIRRLPEGASFRAAWDAALECGVQRL 93

Query: 80  AEELLEEPAPTAEELANP---VFYSKMRDRKQRMGTFLLEKLSNQKY 123
            E++  + A    E           K R    R+  F+L   + ++Y
Sbjct: 94  -EDVAMDRALNGVEETLHYHGQEVGKRRKYNDRLLMFMLRNRAPERY 139


>gi|226223094|ref|YP_002757201.1| transposase [Listeria monocytogenes Clip81459]
 gi|225875556|emb|CAS04259.1| Putative transposase [Listeria monocytogenes serotype 4b str.
          CLIP 80459]
          Length = 88

 Score = 34.0 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 19 IYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62
          I Y  E+   +L   + G  +  + ++ G+P+Y  F++W+K   
Sbjct: 4  IEYGEEIQKSLLVLYSRGSTIQSICKEYGIPRYE-FHKWMKLHD 46


>gi|207108484|ref|ZP_03242646.1| GTP-binding protein Era [Helicobacter pylori HPKX_438_CA4C1]
          Length = 143

 Score = 34.0 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 38  ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA-LQCRLDLLAEELLEE----PAPTAE 92
           AL   + K   P    F + +  D K+++ Y E   +   D L++E+  E         E
Sbjct: 31  ALLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIE 90

Query: 93  ELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           E      Y+++   K+R           +KY  R+   +K     +  IE L++ YK +K
Sbjct: 91  EECIDKVYARIIVEKER----------PKKYMQRLVNNTKTDFFDKALIEELKKRYKIVK 140

Query: 153 PID 155
            I 
Sbjct: 141 YIQ 143


>gi|332829129|gb|EGK01793.1| hypothetical protein HMPREF9455_01941 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 237

 Score = 34.0 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 28/156 (17%)

Query: 19  IYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77
           + Y+ +    I++ +      +  + + + +    TFY W K   + +E   EA   R +
Sbjct: 1   MKYNNKTAERIVEMIEQDLYGVSEICKILRI-SRQTFYDWKKNKPEFKEEVEEAFIRREE 59

Query: 78  LLA------------------EELLEEPA---PTAEELANPVFYSKMRDRKQRMGTFLLE 116
           +L                   E++   P    P  +     V   K      R   ++L+
Sbjct: 60  VLIANARIGLKQLLEGYVQKKEKVTYVPDKNNPVEDVEKCRVVEKKFCPPSIRAIKYVLD 119

Query: 117 KLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLK 152
           +   +K   R+    K     RP +  +++     +
Sbjct: 120 REERRKEQQRLESREK-----RPLVIEVQDEETRRQ 150


>gi|297580361|ref|ZP_06942288.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536007|gb|EFH74841.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 107

 Score = 34.0 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 10 KAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
          K  R       ++      IL Q   G  +  + R+ GM   +TFY+W  K
Sbjct: 14 KRRRFFMKTSKFTDSQIMAILKQAEAGTPVRELCREHGM-SSATFYKWRAK 63


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.300    0.120    0.308 

Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,756,737,008
Number of Sequences: 14124377
Number of extensions: 92347369
Number of successful extensions: 337906
Number of sequences better than 10.0: 268
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 337629
Number of HSP's gapped (non-prelim): 434
length of query: 185
length of database: 4,842,793,630
effective HSP length: 130
effective length of query: 55
effective length of database: 3,006,624,620
effective search space: 165364354100
effective search space used: 165364354100
T: 11
A: 40
X1: 16 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 76 (34.0 bits)