RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] (185 letters) >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:) Length = 143 Score = 65.7 bits (160), Expect = 3e-12 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 14/126 (11%) Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80 Y PE+ I +++G++L V ++ GMP ST +RW+ K ++ Y +A + R D + Sbjct: 16 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 75 Query: 81 EELLEEPAPTAEELANPVFYSKMRDRKQRMGT----FLLEKLSNQKYGPRVSVESKHTID 136 EE+ E+A+ K R+ + L +++ +KYG +V+ E Sbjct: 76 EEIF--------EIADNAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNE--LVGK 125 Query: 137 LRPAIE 142 AI+ Sbjct: 126 DGGAIQ 131 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:) Length = 87 Score = 32.8 bits (75), Expect = 0.030 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 +P + ++ +G++ V R +G+P+ ST W K Sbjct: 23 LTPRDKIHAIQRIHDGESKASVARDIGVPE-STLRGWCKN 61 >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} (C:716-960) Length = 245 Score = 29.1 bits (65), Expect = 0.32 Identities = 6/88 (6%), Positives = 21/88 (23%), Gaps = 12/88 (13%) Query: 18 CIYYSPELFAGILDQVANGKALGHVLRKV--GMPKYSTFYRW------IKKDLKLQEA-- 67 + +D+V +G + +P + + + Sbjct: 75 SNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQ 134 Query: 68 --YTEALQCRLDLLAEELLEEPAPTAEE 93 Y + ++ + E + + Sbjct: 135 SKYPTLISSTMNSIIETASSQSIANLKN 162 >2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:226-497) Length = 272 Score = 28.8 bits (64), Expect = 0.44 Identities = 6/32 (18%), Positives = 10/32 (31%) Query: 64 LQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 + +Y L + + P E LA Sbjct: 227 VHPSYQAPLLDYFEAACAKGGHTPHLLREALA 258 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 28.6 bits (64), Expect = 0.54 Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 7/21 (33%) Query: 92 EELANPVFYS--KM-----RD 105 E L VFY M RD Sbjct: 9 ESLVEVVFYRGMTMQVAVPRD 29 >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* (A:351-401,A:517-530,A:614-906) Length = 358 Score = 27.1 bits (58), Expect = 1.7 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 59 KKDLKLQEAYTEALQCRLDLLAEELLEE 86 K + QE+ +ALQ +LDL E + Sbjct: 6 KAFVASQES-QKALQAQLDLWQAEHGDI 32 >1u1i_A INO1, MIPS, MYO-inositol-1-phosphate synthase; NAD cofactor, metal IONS, isomerase; HET: NAD; 1.90A {Archaeoglobus fulgidus dsm 4304} (A:1-228,A:335-368) Length = 262 Score = 26.8 bits (59), Expect = 1.7 Identities = 9/48 (18%), Positives = 15/48 (31%) Query: 125 PRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVE 172 + + L + R+ E K ++ I STE E Sbjct: 111 GDIKTLEGEGLSLAEMVSRIEEDIKSFADDETVVINVASTEPLPNYSE 158 >3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} (A:1-127,A:295-307) Length = 140 Score = 25.9 bits (57), Expect = 3.2 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 50 KYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYS 101 K+ T LQEA + L +++ + + + + A+P S Sbjct: 1 KFRTMR------QNLQEAS-DVLDDQIESFTKIIQNHYKLSPNDFADPTIQS 45 >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:113-349) Length = 237 Score = 25.8 bits (55), Expect = 4.0 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%) Query: 108 QRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKP 167 + P H+ LR + + + + + ID+ +P E Sbjct: 170 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEG--EAV 227 Query: 168 LEIVESSIAE 177 I E I + Sbjct: 228 FSITEKGIED 237 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.133 0.375 Gapped Lambda K H 0.267 0.0362 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,403,543 Number of extensions: 63989 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 19 Length of query: 185 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 102 Effective length of database: 2,150,234 Effective search space: 219323868 Effective search space used: 219323868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.8 bits)