Query gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 252
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:50:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781189.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2z6r_A Diphthine synthase; me 27.4 37 0.0011 14.9 2.0 20 123-142 104-123 (143)
2 >2fj0_A JuvenIle hormone ester 22.1 46 0.0013 14.3 1.6 18 134-151 25-43 (64)
3 >1r89_A TRNA nucleotidyltransf 18.5 63 0.0019 13.4 3.1 51 189-239 6-61 (137)
4 >1v97_A XD, xanthine dehydroge 16.8 38 0.0011 14.8 0.3 47 108-157 101-151 (194)
5 >3iol_B Glucagon; receptor-lig 16.4 70 0.0021 13.1 1.7 23 213-235 8-30 (31)
6 >1wde_A Probable diphthine syn 13.7 33 0.00097 15.2 -0.7 20 123-142 117-136 (174)
7 >2dsn_A Thermostable lipase; T 12.8 59 0.0018 13.6 0.4 17 148-164 44-60 (69)
8 >1jrj_A Exendin-4; Trp-CAGE, G 11.8 94 0.0028 12.3 1.8 25 213-237 8-32 (39)
9 >2gup_A ROK family protein; su 11.6 96 0.0028 12.3 1.2 11 225-235 122-132 (134)
10 >1vlb_A Aldehyde oxidoreductas 9.6 1.1E+02 0.0032 12.0 0.8 67 88-157 86-156 (196)
No 1
>>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:123-265)
Probab=27.36 E-value=37 Score=14.92 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=15.6
Q ss_pred EEECCCCCHHEECHHHHHHH
Q ss_conf 66028930110204888877
Q gi|254781189|r 123 IYNFGGPMYGVIVPDFIHDL 142 (252)
Q Consensus 123 iynfggpmygvivpdfihdl 142 (252)
-++||+|..-.|+|.-+|++
T Consensus 104 ~~dfG~PlHslVipg~Lh~~ 123 (143)
T 2z6r_A 104 REDFGDPPHILIVPGKLHIV 123 (143)
T ss_dssp TCCCCSSCEEEEECCSCCHH
T ss_pred HHHCCCCCEEEEEECCCCHH
T ss_conf 41558998599998168778
No 2
>>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} (A:237-300)
Probab=22.13 E-value=46 Score=14.34 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=13.2
Q ss_pred ECHHHHHH-HHHCCHHHHH
Q ss_conf 20488887-7607145542
Q gi|254781189|r 134 IVPDFIHD-LLDIPEEKRR 151 (252)
Q Consensus 134 ivpdfihd-lldipeekrr 151 (252)
--||+||+ |.+.|-||-.
T Consensus 25 TDpeeIH~~LI~~P~ekl~ 43 (64)
T 2fj0_A 25 TDPEEIHQKLIEMPAEKLN 43 (64)
T ss_dssp CSHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHH
T ss_conf 0278899988628899999
No 3
>>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:256-337,A:383-437)
Probab=18.45 E-value=63 Score=13.45 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=35.9
Q ss_pred HHCHHHHHHHHHHHHH-----HEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 4387899999743353-----32356884544144554467789879860874235
Q gi|254781189|r 189 TICPTKLMKIFEDTIS-----LYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEM 239 (252)
Q Consensus 189 ticptklmkifedtis-----lyvdpltprdisftqyekhacalvnwlekgkfnem 239 (252)
.+.+.++.+.+++--+ .+-.|-.+.||-+-|.+|-+-++.++|+..-|.-.
T Consensus 6 pls~e~I~e~L~~RgT~iiaV~F~~PdiVdDILyPQL~Rs~~sI~k~Le~~GF~Vi 61 (137)
T 1r89_A 6 EIEPERLRKIVEERGTAVFAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPL 61 (137)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEEECCSCCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 78878876776315755999980687787413678999999999999997698899
No 4
>>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} (A:595-694,A:744-837)
Probab=16.82 E-value=38 Score=14.80 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHHHCC----CEEEEEECCCCCHHEECHHHHHHHHHCCHHHHHCCHHHH
Q ss_conf 55557652023----135666028930110204888877607145542252578
Q gi|254781189|r 108 TEACACLTQYD----RYEVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYL 157 (252)
Q Consensus 108 teacacltqyd----ryeviynfggpmygvivpdfihdlldipeekrrlntsyl 157 (252)
.|...|+.++| +.+|..+--+|.. +-+.+-..|++|+++-|+.+.++
T Consensus 101 lEp~~~~a~~d~~~g~l~v~~~tQ~p~~---~r~~iA~~Lgip~~~V~V~~~~~ 151 (194)
T 1v97_A 101 LETHCTIAIPKGEEGEMELFVSTQNAMK---TQSFVAKMLGVPVNRILVRVKRM 151 (194)
T ss_dssp SSCCEEEEEECSSTTCEEEEECCSCHHH---HHHHHHHHHTSCGGGEEEEECCC
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCHHH---HHHHHHHHHCCCHHHEEEECCCC
T ss_conf 6786389999789996999989957999---99999999789889989990887
No 5
>>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:)
Probab=16.40 E-value=70 Score=13.14 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 54414455446778987986087
Q gi|254781189|r 213 RDISFTQYEKHACALVNWLEKGK 235 (252)
Q Consensus 213 rdisftqyekhacalvnwlekgk 235 (252)
.|+|--.-++.|-..|+||-+||
T Consensus 8 sD~s~yLe~~aakdFv~WL~n~k 30 (31)
T 3iol_B 8 SDVSSYLEGQAAKEFIAWLVKGR 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76899999999999999998068
No 6
>>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:121-294)
Probab=13.71 E-value=33 Score=15.23 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=15.7
Q ss_pred EEECCCCCHHEECHHHHHHH
Q ss_conf 66028930110204888877
Q gi|254781189|r 123 IYNFGGPMYGVIVPDFIHDL 142 (252)
Q Consensus 123 iynfggpmygvivpdfihdl 142 (252)
-++||+|..-.|+|.-+|++
T Consensus 117 ~~DfG~PlHslVIpg~LH~~ 136 (174)
T 1wde_A 117 TADVEGGVYSIVIPARLSGV 136 (174)
T ss_dssp TCCCCCCCCEEEECSSCCHH
T ss_pred HHHCCCCCEEEEEECCCCHH
T ss_conf 76548998799996888868
No 7
>>2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 2z5g_A 1ji3_A 2w22_A* 1ku0_A (A:169-237)
Probab=12.82 E-value=59 Score=13.61 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred HHHHCCHHHHHHHHHHH
Q ss_conf 55422525787765311
Q gi|254781189|r 148 EKRRLNTSYLTYVDRGL 164 (252)
Q Consensus 148 ekrrlntsyltyvdrgl 164 (252)
-|++-|.||..|++|-+
T Consensus 44 lKq~pgES~~~Y~~RV~ 60 (69)
T 2dsn_A 44 LRRQPGESFDHYFERLK 60 (69)
T ss_dssp CCCCTTCCHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHH
T ss_conf 11045412999999975
No 8
>>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} (A:)
Probab=11.80 E-value=94 Score=12.33 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5441445544677898798608742
Q gi|254781189|r 213 RDISFTQYEKHACALVNWLEKGKFN 237 (252)
Q Consensus 213 rdisftqyekhacalvnwlekgkfn 237 (252)
.|+|--.-++.|-..|.||-+||-+
T Consensus 8 sD~s~yLe~~aakdFv~WL~~~k~~ 32 (39)
T 1jrj_A 8 SDLSKQMEEEAVRLFIEWLKNGGPS 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6799999999999999999828989
No 9
>>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} (A:1-114,A:273-292)
Probab=11.64 E-value=96 Score=12.30 Aligned_cols=11 Identities=64% Similarity=1.063 Sum_probs=8.8
Q ss_pred HHHHHHHHCCC
Q ss_conf 78987986087
Q gi|254781189|r 225 CALVNWLEKGK 235 (252)
Q Consensus 225 calvnwlekgk 235 (252)
-||||||...|
T Consensus 122 ~~~~~~~~~~~ 132 (134)
T 2gup_A 122 GALVNWLQEEK 132 (134)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999740
No 10
>>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:194-299,A:368-457)
Probab=9.57 E-value=1.1e+02 Score=11.98 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=46.0
Q ss_pred CEEEEEEEECCCH-HHHHHHHHHHHHHHHHCC---CEEEEEECCCCCHHEECHHHHHHHHHCCHHHHHCCHHHH
Q ss_conf 0156777612205-678887655557652023---135666028930110204888877607145542252578
Q gi|254781189|r 88 EQAIQLKIKEDSA-SERLVKATEACACLTQYD---RYEVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYL 157 (252)
Q Consensus 88 eqaiqlkikedsa-serlvkateacacltqyd---ryeviynfggpmygvivpdfihdlldipeekrrlntsyl 157 (252)
.|.|-+-+-|+-. .++..+.-|.-+|+..|| |.++.-+.-+|. .+-+.+-..|++|.++-|+.+.+.
T Consensus 86 GepVa~VvA~t~~~A~~Aa~lmEp~~~~a~~~~dg~l~i~~~tQ~p~---~~~~~iA~~lglp~~~V~v~~~~~ 156 (196)
T 1vlb_A 86 GDCIALVCADSEANARAAAEKIEPDVAFAYMGDDGKCYIHSKSIGVH---LHLYMIAPGVGLEPDQLVLVANPM 156 (196)
T ss_dssp TCEEEEEEESSHHHHHHHHTTSSCCEEEEEECTTSCEEEEESCSCHH---HHHHHHHHHHTCCGGGEEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCHH---HHHHHHHHEEECCCCCEEEEEECC
T ss_conf 46227999679999999873057643798502566320002444135---544233340112220002332011
Done!